Wall clock time and date at job start Tue Mar 31 2020 15:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47812 * 2 1 4 4 C 1.50703 * 109.46888 * 120.00574 * 2 1 3 5 5 H 1.08003 * 120.00151 * 119.99640 * 4 2 1 6 6 C 1.37876 * 119.99738 * 299.99234 * 4 2 1 7 7 N 1.31510 * 120.00280 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99942 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.46942 * 0.02562 * 8 6 4 10 10 H 1.48493 * 109.46976 * 120.00071 * 8 6 4 11 11 H 1.48494 * 109.46874 * 240.00324 * 8 6 4 12 12 N 1.46498 * 109.46883 * 239.99927 * 2 1 3 13 13 C 1.34776 * 120.00151 * 85.00431 * 12 2 1 14 14 O 1.21557 * 119.99711 * 359.97438 * 13 12 2 15 15 C 1.47848 * 120.00407 * 180.02562 * 13 12 2 16 16 C 1.39595 * 120.14228 * 359.97438 * 15 13 12 17 17 C 1.37942 * 119.85128 * 180.02562 * 16 15 13 18 18 C 1.38377 * 120.14129 * 359.72261 * 17 16 15 19 19 C 1.38329 * 120.29909 * 0.55230 * 18 17 16 20 20 C 1.50695 * 119.93180 * 179.72288 * 19 18 17 21 21 N 1.46504 * 109.47201 * 269.72686 * 20 19 18 22 22 C 1.31472 * 119.99845 * 114.47368 * 21 20 19 23 23 C 1.41990 * 120.91706 * 173.95943 * 22 21 20 24 24 C 1.35637 * 118.59932 * 179.97438 * 23 22 21 25 25 N 1.33782 * 120.41834 * 0.02562 * 24 23 22 26 26 C 1.30406 * 122.02451 * 359.97438 * 25 24 23 27 27 N 1.35661 * 121.42094 * 359.97438 * 26 25 24 28 28 H 0.96998 * 120.31372 * 179.97438 * 27 26 25 29 29 C 1.37983 * 120.14012 * 359.44777 * 19 18 17 30 30 H 1.08993 * 109.47422 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46554 * 300.00126 * 1 2 3 32 32 H 1.08999 * 109.46542 * 59.99296 * 1 2 3 33 33 H 0.96999 * 120.00181 * 179.97438 * 7 6 4 34 34 H 0.97001 * 120.00500 * 265.00477 * 12 2 1 35 35 H 1.07999 * 120.07323 * 0.03987 * 16 15 13 36 36 H 1.08002 * 119.92218 * 180.02562 * 17 16 15 37 37 H 1.08005 * 119.84708 * 180.29854 * 18 17 16 38 38 H 1.09000 * 109.47242 * 149.72900 * 20 19 18 39 39 H 1.09001 * 109.47228 * 29.72679 * 20 19 18 40 40 H 1.08002 * 120.69686 * 0.02562 * 23 22 21 41 41 H 1.08002 * 119.79364 * 180.02562 * 24 23 22 42 42 H 1.07998 * 119.28967 * 180.02562 * 26 25 24 43 43 H 1.08005 * 120.07252 * 180.25387 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6531 -1.5887 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3224 -1.1198 4.0079 9 1 3.1482 -2.2860 3.6037 10 1 3.1472 -0.1861 4.8160 11 1 1.1677 -1.5868 4.8164 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0183 -2.3571 14 8 1.8576 1.1610 -2.4118 15 6 2.6393 -0.7154 -3.5645 16 6 2.9720 -2.0698 -3.5052 17 6 3.4312 -2.7141 -4.6352 18 6 3.5568 -2.0221 -5.8270 19 6 3.2341 -0.6785 -5.8912 20 6 3.3799 0.0685 -7.1918 21 7 4.7245 0.6441 -7.2763 22 6 5.5644 0.2203 -8.1947 23 6 6.8241 0.8496 -8.3774 24 6 7.6544 0.3734 -9.3385 25 7 7.2881 -0.6671 -10.0954 26 6 6.1364 -1.2602 -9.9451 27 7 5.2464 -0.8493 -9.0072 28 1 4.3941 -1.3020 -8.9096 29 6 2.7737 -0.0221 -4.7682 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3632 0.5139 0.8900 32 1 -0.3632 0.5140 -0.8899 33 1 0.7083 1.1607 3.4845 34 1 2.2489 -1.6318 -1.1527 35 1 2.8700 -2.6120 -2.5768 36 1 3.6886 -3.7620 -4.5908 37 1 3.9122 -2.5325 -6.7100 38 1 2.6394 0.8670 -7.2372 39 1 3.2256 -0.6179 -8.0243 40 1 7.1152 1.6891 -7.7635 41 1 8.6173 0.8373 -9.4938 42 1 5.8861 -2.0969 -10.5803 43 1 2.5182 1.0260 -4.8206 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348733228.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:20 Heat of formation + Delta-G solvation = 55.835683 kcal Electronic energy + Delta-G solvation = -25763.577567 eV Core-core repulsion = 22002.342720 eV Total energy + Delta-G solvation = -3761.234846 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.31655 -39.81318 -38.15240 -36.35739 -34.81066 -34.00271 -32.86689 -32.19558 -31.05205 -30.16142 -28.68317 -26.60498 -25.26197 -24.82848 -23.78566 -22.90908 -21.57727 -20.81287 -19.35265 -19.21093 -18.01833 -17.59276 -16.93275 -16.32548 -15.85712 -15.50897 -15.40913 -15.02022 -14.95259 -14.67649 -14.58220 -14.15889 -13.89384 -13.48276 -13.14901 -12.99742 -12.62643 -12.44601 -12.24754 -11.93021 -11.71827 -11.57508 -11.19235 -11.08953 -10.96333 -10.79154 -10.74015 -10.41513 -10.30293 -10.23915 -9.83826 -9.13678 -9.03479 -8.87929 -8.79040 -8.55443 -7.94925 -7.90456 -6.12071 -4.21358 0.38580 0.99233 1.33642 1.54196 2.33907 3.22708 3.24047 3.27821 3.31637 3.34386 3.75502 3.97816 4.04134 4.22428 4.37003 4.42585 4.57300 4.71033 4.82328 4.89129 4.93345 5.15941 5.20206 5.29037 5.33651 5.40368 5.45990 5.60806 5.67070 5.85122 5.98973 6.07188 6.35816 6.42553 6.48739 6.51180 6.83023 6.89561 6.97646 7.15377 7.45007 7.47443 7.56627 7.68573 7.69772 7.91995 8.14920 8.64982 8.77906 9.10095 9.45998 10.94018 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.024345 B = 0.002101 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.874633 B =13323.637296 C =13415.690628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.050 0.950 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.283 1.283 12 N -0.701 5.701 13 C 0.541 3.459 14 O -0.549 6.549 15 C -0.117 4.117 16 C -0.088 4.088 17 C -0.126 4.126 18 C -0.103 4.103 19 C -0.094 4.094 20 C 0.095 3.905 21 N -0.570 5.570 22 C 0.391 3.609 23 C -0.194 4.194 24 C 0.116 3.884 25 N -0.555 5.555 26 C 0.375 3.625 27 N -0.664 5.664 28 H 0.415 0.585 29 C -0.043 4.043 30 H 0.026 0.974 31 H 0.091 0.909 32 H 0.015 0.985 33 H 0.264 0.736 34 H 0.388 0.612 35 H 0.129 0.871 36 H 0.125 0.875 37 H 0.111 0.889 38 H 0.094 0.906 39 H 0.035 0.965 40 H 0.153 0.847 41 H 0.163 0.837 42 H 0.199 0.801 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.648 -8.222 -26.164 28.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.068 0.932 4 C -0.571 4.571 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.209 1.209 12 N -0.349 5.349 13 C 0.326 3.674 14 O -0.429 6.429 15 C -0.120 4.120 16 C -0.107 4.107 17 C -0.144 4.144 18 C -0.122 4.122 19 C -0.094 4.094 20 C -0.035 4.035 21 N -0.297 5.297 22 C 0.124 3.876 23 C -0.220 4.220 24 C -0.020 4.020 25 N -0.277 5.277 26 C 0.087 3.913 27 N -0.294 5.294 28 H 0.255 0.745 29 C -0.063 4.063 30 H 0.045 0.955 31 H 0.110 0.890 32 H 0.034 0.966 33 H 0.074 0.926 34 H 0.221 0.779 35 H 0.147 0.853 36 H 0.143 0.857 37 H 0.129 0.871 38 H 0.112 0.888 39 H 0.053 0.947 40 H 0.171 0.829 41 H 0.180 0.820 42 H 0.216 0.784 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 8.889 -6.701 -25.763 28.065 hybrid contribution -0.744 -1.561 1.087 2.042 sum 8.145 -8.261 -24.676 27.267 Atomic orbital electron populations 1.22076 0.98326 0.99148 1.00994 1.18796 0.91123 0.94089 0.79841 0.93197 1.21240 1.32413 1.13216 0.90280 0.92038 1.24896 0.94823 0.94972 0.99082 1.69911 1.35858 1.22450 1.23787 0.86380 0.78587 0.79512 0.82534 1.19752 1.20848 1.20866 1.46493 1.64490 1.13520 1.10401 1.18228 0.78964 0.86816 0.83393 1.90728 1.51459 1.15608 1.85107 1.20355 1.02249 0.94292 0.95123 1.21416 0.96743 0.93723 0.98778 1.20982 1.00848 0.99980 0.92609 1.20973 0.99667 0.93800 0.97746 1.19647 1.00884 0.93576 0.95334 1.20798 0.92268 0.97480 0.92920 1.73615 1.03817 1.31973 1.20317 1.20493 0.95398 0.85185 0.86566 1.21589 0.92288 1.04569 1.03508 1.22247 0.99055 0.90770 0.89938 1.68185 1.15819 1.13581 1.30152 1.24967 0.84578 0.94897 0.86856 1.44505 1.20710 1.30996 1.33197 0.74509 1.21123 0.94534 1.00261 0.90353 0.95453 0.89042 0.96582 0.92606 0.77885 0.85290 0.85666 0.87109 0.88807 0.94683 0.82883 0.82005 0.78417 0.84586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.74 9.26 37.16 0.34 -3.40 16 2 C 0.26 6.89 2.56 -69.08 -0.18 6.71 16 3 H 0.05 1.51 7.58 -51.93 -0.39 1.11 16 4 C -0.53 -14.35 8.73 -34.44 -0.30 -14.65 16 5 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -25.15 11.32 55.43 0.63 -24.52 16 8 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 9 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 N -0.70 -15.35 5.02 -55.88 -0.28 -15.63 16 13 C 0.54 11.72 7.74 -12.33 -0.10 11.63 16 14 O -0.55 -13.97 16.01 5.32 0.09 -13.88 16 15 C -0.12 -2.02 5.87 -104.97 -0.62 -2.63 16 16 C -0.09 -1.23 9.54 -39.18 -0.37 -1.60 16 17 C -0.13 -1.45 10.03 -39.64 -0.40 -1.85 16 18 C -0.10 -1.13 9.69 -39.50 -0.38 -1.51 16 19 C -0.09 -1.19 5.46 -104.68 -0.57 -1.76 16 20 C 0.09 1.01 6.41 -5.19 -0.03 0.97 16 21 N -0.57 -6.90 10.57 -61.24 -0.65 -7.55 16 22 C 0.39 3.71 7.50 -155.64 -1.17 2.54 16 23 C -0.19 -1.66 10.09 -39.08 -0.39 -2.05 16 24 C 0.12 0.82 11.16 -17.63 -0.20 0.62 16 25 N -0.56 -3.88 10.36 -14.39 -0.15 -4.03 16 26 C 0.37 1.65 12.40 -89.89 -1.11 0.53 16 27 N -0.66 -3.79 5.28 -13.08 -0.07 -3.86 16 28 H 0.42 1.57 6.41 -40.82 -0.26 1.30 16 29 C -0.04 -0.69 9.24 -39.18 -0.36 -1.05 16 30 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 34 H 0.39 7.31 6.57 -40.82 -0.27 7.04 16 35 H 0.13 1.63 6.41 -52.49 -0.34 1.30 16 36 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 37 H 0.11 0.87 8.06 -52.48 -0.42 0.44 16 38 H 0.09 1.02 8.08 -51.93 -0.42 0.60 16 39 H 0.04 0.26 5.53 -51.93 -0.29 -0.03 16 40 H 0.15 1.25 8.06 -52.49 -0.42 0.82 16 41 H 0.16 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.20 -0.05 8.06 -52.49 -0.42 -0.47 16 43 H 0.14 2.31 7.65 -52.48 -0.40 1.91 16 LS Contribution 367.32 15.07 5.54 5.54 Total: -1.00 -35.53 367.32 -11.04 -46.56 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -5.18 Total: 7.36 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -5.93 Total: -5.81 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: -0.52 Total: -55.59 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: 0.09 Total: -13.88 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.53 -11.04 -46.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348733228.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.400 kcal (2) G-P(sol) polarization free energy of solvation -35.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds