Wall clock time and date at job start Tue Mar 31 2020 15:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47812 * 2 1 4 4 C 1.50703 * 109.46888 * 120.00574 * 2 1 3 5 5 H 1.08003 * 120.00151 * 119.99640 * 4 2 1 6 6 C 1.37876 * 119.99738 * 299.99234 * 4 2 1 7 7 N 1.31510 * 120.00280 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99942 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.46942 * 0.02562 * 8 6 4 10 10 H 1.48493 * 109.46976 * 120.00071 * 8 6 4 11 11 H 1.48494 * 109.46874 * 240.00324 * 8 6 4 12 12 N 1.46498 * 109.46883 * 239.99927 * 2 1 3 13 13 C 1.34776 * 120.00151 * 85.00431 * 12 2 1 14 14 O 1.21557 * 119.99711 * 359.97438 * 13 12 2 15 15 C 1.47848 * 120.00407 * 180.02562 * 13 12 2 16 16 C 1.39595 * 120.14228 * 359.97438 * 15 13 12 17 17 C 1.37942 * 119.85128 * 180.02562 * 16 15 13 18 18 C 1.38377 * 120.14129 * 359.72261 * 17 16 15 19 19 C 1.38329 * 120.29909 * 0.55230 * 18 17 16 20 20 C 1.50695 * 119.93180 * 179.72288 * 19 18 17 21 21 N 1.46504 * 109.47201 * 269.72686 * 20 19 18 22 22 C 1.31472 * 119.99845 * 114.47368 * 21 20 19 23 23 C 1.41990 * 120.91706 * 173.95943 * 22 21 20 24 24 C 1.35637 * 118.59932 * 179.97438 * 23 22 21 25 25 N 1.33782 * 120.41834 * 0.02562 * 24 23 22 26 26 C 1.30406 * 122.02451 * 359.97438 * 25 24 23 27 27 N 1.35661 * 121.42094 * 359.97438 * 26 25 24 28 28 H 0.96998 * 120.31372 * 179.97438 * 27 26 25 29 29 C 1.37983 * 120.14012 * 359.44777 * 19 18 17 30 30 H 1.08993 * 109.47422 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46554 * 300.00126 * 1 2 3 32 32 H 1.08999 * 109.46542 * 59.99296 * 1 2 3 33 33 H 0.96999 * 120.00181 * 179.97438 * 7 6 4 34 34 H 0.97001 * 120.00500 * 265.00477 * 12 2 1 35 35 H 1.07999 * 120.07323 * 0.03987 * 16 15 13 36 36 H 1.08002 * 119.92218 * 180.02562 * 17 16 15 37 37 H 1.08005 * 119.84708 * 180.29854 * 18 17 16 38 38 H 1.09000 * 109.47242 * 149.72900 * 20 19 18 39 39 H 1.09001 * 109.47228 * 29.72679 * 20 19 18 40 40 H 1.08002 * 120.69686 * 0.02562 * 23 22 21 41 41 H 1.08002 * 119.79364 * 180.02562 * 24 23 22 42 42 H 1.07998 * 119.28967 * 180.02562 * 26 25 24 43 43 H 1.08005 * 120.07252 * 180.25387 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6531 -1.5887 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3224 -1.1198 4.0079 9 1 3.1482 -2.2860 3.6037 10 1 3.1472 -0.1861 4.8160 11 1 1.1677 -1.5868 4.8164 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0183 -2.3571 14 8 1.8576 1.1610 -2.4118 15 6 2.6393 -0.7154 -3.5645 16 6 2.9720 -2.0698 -3.5052 17 6 3.4312 -2.7141 -4.6352 18 6 3.5568 -2.0221 -5.8270 19 6 3.2341 -0.6785 -5.8912 20 6 3.3799 0.0685 -7.1918 21 7 4.7245 0.6441 -7.2763 22 6 5.5644 0.2203 -8.1947 23 6 6.8241 0.8496 -8.3774 24 6 7.6544 0.3734 -9.3385 25 7 7.2881 -0.6671 -10.0954 26 6 6.1364 -1.2602 -9.9451 27 7 5.2464 -0.8493 -9.0072 28 1 4.3941 -1.3020 -8.9096 29 6 2.7737 -0.0221 -4.7682 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3632 0.5139 0.8900 32 1 -0.3632 0.5140 -0.8899 33 1 0.7083 1.1607 3.4845 34 1 2.2489 -1.6318 -1.1527 35 1 2.8700 -2.6120 -2.5768 36 1 3.6886 -3.7620 -4.5908 37 1 3.9122 -2.5325 -6.7100 38 1 2.6394 0.8670 -7.2372 39 1 3.2256 -0.6179 -8.0243 40 1 7.1152 1.6891 -7.7635 41 1 8.6173 0.8373 -9.4938 42 1 5.8861 -2.0969 -10.5803 43 1 2.5182 1.0260 -4.8206 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348733228.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:19 Heat of formation + Delta-G solvation = 31.663242 kcal Electronic energy + Delta-G solvation = -25764.625763 eV Core-core repulsion = 22002.342720 eV Total energy + Delta-G solvation = -3762.283042 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.86770 -41.18119 -39.55996 -37.07247 -36.79366 -34.67252 -34.40294 -33.39158 -32.27321 -31.09341 -30.38852 -27.40935 -27.35314 -25.42827 -25.12643 -23.65046 -22.75325 -22.38617 -21.03954 -19.76049 -19.30021 -18.39495 -17.91744 -17.47513 -17.35986 -16.98055 -16.41052 -16.16294 -15.96813 -15.79085 -15.48540 -15.39589 -15.22162 -14.73937 -14.53469 -14.28618 -13.95869 -13.76720 -13.45033 -13.08649 -13.00439 -12.90199 -12.78112 -12.70427 -12.55395 -12.32386 -12.13814 -12.07032 -11.43161 -11.15103 -10.95203 -10.90105 -10.64257 -10.51627 -10.07886 -9.82606 -9.70482 -8.60290 -8.20618 -6.38947 -0.15843 -0.09305 0.31747 0.92888 1.43009 1.43816 1.56419 1.86450 1.89933 2.29963 2.52618 2.72072 2.82355 3.09738 3.39239 3.49749 3.71218 3.76268 3.86063 4.03563 4.08679 4.12127 4.27755 4.30847 4.53382 4.58845 4.64675 4.70518 4.82440 4.86747 4.89085 4.96463 5.03125 5.15583 5.32206 5.33022 5.38016 5.44358 5.52176 5.54427 5.62715 5.83894 5.90015 6.04011 6.05948 6.67454 6.85573 6.97248 7.11032 7.26501 7.43627 8.86347 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.024345 B = 0.002101 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.874633 B =13323.637296 C =13415.690628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.268 3.732 3 H -0.004 1.004 4 C -0.547 4.547 5 H 0.075 0.925 6 C 0.012 3.988 7 N -0.918 5.918 8 Si 0.978 3.022 9 H -0.258 1.258 10 H -0.284 1.284 11 H -0.276 1.276 12 N -0.696 5.696 13 C 0.536 3.464 14 O -0.602 6.602 15 C -0.146 4.146 16 C -0.090 4.090 17 C -0.115 4.115 18 C -0.086 4.086 19 C -0.092 4.092 20 C 0.098 3.902 21 N -0.628 5.628 22 C 0.396 3.604 23 C -0.235 4.235 24 C 0.138 3.862 25 N -0.582 5.582 26 C 0.391 3.609 27 N -0.653 5.653 28 H 0.427 0.573 29 C -0.065 4.065 30 H 0.043 0.957 31 H 0.070 0.930 32 H 0.009 0.991 33 H 0.266 0.734 34 H 0.404 0.596 35 H 0.141 0.859 36 H 0.168 0.832 37 H 0.157 0.843 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.143 0.857 41 H 0.181 0.819 42 H 0.252 0.748 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.358 -12.785 -28.606 33.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.165 3.835 3 H 0.014 0.986 4 C -0.585 4.585 5 H 0.093 0.907 6 C -0.188 4.188 7 N -0.556 5.556 8 Si 0.802 3.198 9 H -0.182 1.182 10 H -0.210 1.210 11 H -0.202 1.202 12 N -0.345 5.345 13 C 0.325 3.675 14 O -0.485 6.485 15 C -0.149 4.149 16 C -0.109 4.109 17 C -0.133 4.133 18 C -0.104 4.104 19 C -0.092 4.092 20 C -0.032 4.032 21 N -0.358 5.358 22 C 0.130 3.870 23 C -0.261 4.261 24 C 0.001 3.999 25 N -0.304 5.304 26 C 0.105 3.895 27 N -0.282 5.282 28 H 0.269 0.731 29 C -0.085 4.085 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.028 0.972 33 H 0.076 0.924 34 H 0.241 0.759 35 H 0.158 0.842 36 H 0.185 0.815 37 H 0.174 0.826 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.161 0.839 41 H 0.198 0.802 42 H 0.268 0.732 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 10.596 -11.336 -28.251 32.232 hybrid contribution -1.166 -0.173 1.597 1.985 sum 9.429 -11.509 -26.655 30.526 Atomic orbital electron populations 1.21894 0.98019 0.99651 0.99598 1.18429 0.91374 0.91903 0.81788 0.98598 1.21535 1.32741 1.13625 0.90581 0.90709 1.25870 0.94828 0.95620 1.02495 1.70064 1.36902 1.23942 1.24673 0.85214 0.78122 0.78458 0.78032 1.18215 1.20988 1.20171 1.46208 1.64604 1.14173 1.09468 1.18998 0.77683 0.86364 0.84488 1.90683 1.53696 1.18071 1.86045 1.19996 1.05723 0.95930 0.93237 1.21591 0.96583 0.92078 1.00632 1.21451 0.98699 1.01724 0.91379 1.21488 0.97006 0.92666 0.99270 1.19924 0.99600 0.94725 0.94998 1.20715 0.91886 0.97597 0.92966 1.73626 1.04780 1.34355 1.23031 1.20556 0.94983 0.85420 0.86038 1.21598 0.93158 1.05909 1.05437 1.22573 0.99159 0.89928 0.88248 1.68281 1.17353 1.14086 1.30717 1.26035 0.83129 0.94682 0.85631 1.44525 1.21432 1.29770 1.32494 0.73107 1.21047 0.96484 0.99316 0.91655 0.93770 0.91157 0.97177 0.92446 0.75905 0.84154 0.81473 0.82555 0.90564 0.90917 0.83917 0.80197 0.73232 0.87607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.08 9.26 71.98 0.67 -6.42 16 2 C 0.27 14.77 2.56 44.25 0.11 14.88 16 3 H 0.00 -0.25 7.58 -2.39 -0.02 -0.27 16 4 C -0.55 -29.90 8.73 25.60 0.22 -29.67 16 5 H 0.07 3.80 7.74 -2.91 -0.02 3.78 16 6 C 0.01 0.65 5.30 84.66 0.45 1.10 16 7 N -0.92 -53.94 11.32 21.45 0.24 -53.70 16 8 Si 0.98 42.72 29.54 68.60 2.03 44.74 16 9 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 12 N -0.70 -31.74 5.02 -448.97 -2.25 -33.99 16 13 C 0.54 24.84 7.74 86.79 0.67 25.51 16 14 O -0.60 -33.51 16.01 -3.89 -0.06 -33.57 16 15 C -0.15 -5.21 5.87 -20.09 -0.12 -5.33 16 16 C -0.09 -2.38 9.54 22.53 0.21 -2.16 16 17 C -0.11 -2.15 10.03 22.23 0.22 -1.93 16 18 C -0.09 -1.53 9.69 22.32 0.22 -1.31 16 19 C -0.09 -2.24 5.46 -19.90 -0.11 -2.35 16 20 C 0.10 2.00 6.41 85.63 0.55 2.55 16 21 N -0.63 -15.16 10.57 -347.66 -3.67 -18.83 16 22 C 0.40 6.96 7.50 134.38 1.01 7.96 16 23 C -0.24 -3.89 10.09 22.60 0.23 -3.67 16 24 C 0.14 1.68 11.16 83.79 0.94 2.62 16 25 N -0.58 -6.14 10.36 -199.44 -2.07 -8.21 16 26 C 0.39 1.63 12.40 180.09 2.23 3.86 16 27 N -0.65 -4.97 5.28 -195.28 -1.03 -6.01 16 28 H 0.43 1.14 6.41 -92.71 -0.59 0.55 16 29 C -0.07 -2.20 9.24 22.53 0.21 -2.00 16 30 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.07 4.04 6.07 -2.39 -0.01 4.03 16 32 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 34 H 0.40 15.36 6.57 -92.71 -0.61 14.75 16 35 H 0.14 3.28 6.41 -2.91 -0.02 3.26 16 36 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 37 H 0.16 1.39 8.06 -2.91 -0.02 1.36 16 38 H 0.08 1.75 8.08 -2.39 -0.02 1.73 16 39 H 0.07 0.83 5.53 -2.39 -0.01 0.82 16 40 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 41 H 0.18 1.33 8.06 -2.91 -0.02 1.31 16 42 H 0.25 -1.76 8.06 -2.91 -0.02 -1.79 16 43 H 0.11 4.10 7.65 -2.91 -0.02 4.07 16 Total: -1.00 -84.86 367.32 0.76 -84.11 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: -0.14 Total: 21.80 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: 7.71 Total: 3.65 kcal Atomic # 7 Polarization: -111.95 SS G_CDS: -8.78 Total: -120.73 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -0.06 Total: -33.57 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Total: -84.86 0.76 -84.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348733228.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.770 kcal (2) G-P(sol) polarization free energy of solvation -84.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds