Wall clock time and date at job start Tue Mar 31 2020 15:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1 6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1 7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47256 * 90.00491 * 8 6 4 10 10 H 1.48506 * 109.46930 * 210.00332 * 8 6 4 11 11 H 1.48499 * 109.47104 * 330.00193 * 8 6 4 12 12 N 1.46505 * 109.47212 * 120.00008 * 2 1 3 13 13 C 1.46498 * 119.99673 * 60.00290 * 12 2 1 14 14 S 1.65593 * 119.99939 * 239.99810 * 12 2 1 15 15 O 1.42101 * 106.40455 * 203.53915 * 14 12 2 16 16 O 1.42093 * 106.40554 * 336.46252 * 14 12 2 17 17 C 1.76201 * 107.21631 * 90.00236 * 14 12 2 18 18 C 1.38237 * 120.00131 * 269.72594 * 17 14 12 19 19 C 1.38237 * 120.00012 * 179.77161 * 18 17 14 20 20 C 1.38233 * 119.99561 * 0.47628 * 19 18 17 21 21 C 1.50708 * 119.99434 * 179.77495 * 20 19 18 22 22 N 1.46908 * 109.46753 * 270.02496 * 21 20 19 23 23 C 1.46902 * 110.99656 * 170.00235 * 22 21 20 24 24 C 1.46897 * 110.99818 * 293.95143 * 22 21 20 25 25 C 1.38226 * 120.00601 * 359.79778 * 20 19 18 26 26 C 1.38233 * 119.99972 * 359.95591 * 25 20 19 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 29 29 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 30 30 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 31 31 H 1.08992 * 109.47421 * 89.99857 * 13 12 2 32 32 H 1.09007 * 109.46720 * 209.99867 * 13 12 2 33 33 H 1.09003 * 109.47218 * 329.99648 * 13 12 2 34 34 H 1.08003 * 119.99600 * 359.97438 * 18 17 14 35 35 H 1.07999 * 119.99851 * 180.25307 * 19 18 17 36 36 H 1.09002 * 109.47450 * 30.02347 * 21 20 19 37 37 H 1.08992 * 109.47063 * 150.02614 * 21 20 19 38 38 H 1.09001 * 109.47350 * 59.99882 * 23 22 21 39 39 H 1.08998 * 109.47013 * 179.97438 * 23 22 21 40 40 H 1.09003 * 109.46879 * 299.99678 * 23 22 21 41 41 H 1.09004 * 109.47159 * 60.00754 * 24 22 21 42 42 H 1.09004 * 109.47121 * 180.02562 * 24 22 21 43 43 H 1.08995 * 109.47560 * 300.00549 * 24 22 21 44 44 H 1.07998 * 120.00334 * 179.97438 * 25 20 19 45 45 H 1.08003 * 120.00195 * 179.97438 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.3426 -2.1616 -4.4119 10 1 2.4864 -0.1413 -5.1123 11 1 3.6292 -1.7582 -3.7122 12 7 2.0183 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4279 14 16 2.9704 0.1141 2.2862 15 8 3.7119 -0.8789 2.9814 16 8 3.5794 1.1829 1.5748 17 6 1.8961 0.8534 3.4710 18 6 1.4157 2.1332 3.2649 19 6 0.5691 2.7113 4.1922 20 6 0.2107 2.0135 5.3304 21 6 -0.7082 2.6458 6.3438 22 7 0.0886 3.3759 7.3389 23 6 -0.7710 4.1977 8.2013 24 6 0.9073 2.4537 8.1370 25 6 0.6956 0.7360 5.5393 26 6 1.5381 0.1559 4.6096 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3635 0.5138 -0.8899 30 1 0.7092 1.1618 -3.4843 31 1 2.4157 -2.7377 0.9716 32 1 1.6238 -2.2853 2.5002 33 1 0.6904 -2.3002 0.9846 34 1 1.6993 2.6800 2.3777 35 1 0.1905 3.7096 4.0291 36 1 -1.3833 3.3378 5.8402 37 1 -1.2889 1.8695 6.8419 38 1 -1.4806 3.5564 8.7241 39 1 -0.1558 4.7270 8.9290 40 1 -1.3144 4.9192 7.5911 41 1 1.5842 1.9073 7.4801 42 1 1.4867 3.0203 8.8661 43 1 0.2585 1.7492 8.6574 44 1 0.4159 0.1910 6.4288 45 1 1.9173 -0.8421 4.7730 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351569444.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:46 Heat of formation + Delta-G solvation = -34.969684 kcal Electronic energy + Delta-G solvation = -26353.596147 eV Core-core repulsion = 22691.574885 eV Total energy + Delta-G solvation = -3662.021262 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.61993 -37.24888 -36.67295 -36.16427 -35.20858 -32.57904 -32.02930 -31.01831 -29.08734 -27.89420 -27.18390 -25.59197 -25.12726 -23.07602 -22.73204 -21.20081 -20.65803 -18.52904 -17.46968 -16.82715 -16.32924 -15.99981 -15.88572 -15.79316 -15.25432 -14.80586 -14.57721 -14.31315 -14.00113 -13.54898 -13.45001 -13.12863 -12.92516 -12.74177 -12.70414 -12.44465 -12.05172 -12.00495 -11.90647 -11.72920 -11.67119 -11.47444 -11.34499 -11.21718 -11.08903 -10.96191 -10.78516 -10.56139 -10.33076 -10.26772 -9.97764 -9.25515 -9.18663 -8.94472 -8.67510 -8.44930 -7.95466 -6.06449 -4.12847 0.78376 1.10560 1.38525 3.29604 3.30239 3.36706 3.41295 3.73945 3.92451 4.35438 4.42306 4.50619 4.60059 4.78696 4.86831 4.95646 5.00416 5.14264 5.16180 5.25096 5.30610 5.33885 5.40006 5.51477 5.59501 5.62479 5.66957 5.77623 6.00148 6.14475 6.16931 6.24366 6.36228 6.42234 6.61994 6.62712 6.66713 6.77920 6.81346 6.90930 7.02215 7.44195 7.63844 7.79221 8.04437 8.27864 8.89366 9.52821 10.99313 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.022735 B = 0.003274 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.278789 B = 8550.146415 C = 9096.005035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.267 3.733 3 H 0.061 0.939 4 C -0.519 4.519 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.273 1.273 12 N -0.980 5.980 13 C 0.108 3.892 14 S 2.682 3.318 15 O -0.975 6.975 16 O -0.952 6.952 17 C -0.669 4.669 18 C -0.014 4.014 19 C -0.120 4.120 20 C -0.036 4.036 21 C 0.088 3.912 22 N -0.542 5.542 23 C 0.025 3.975 24 C 0.017 3.983 25 C -0.140 4.140 26 C -0.024 4.024 27 H 0.034 0.966 28 H 0.011 0.989 29 H 0.094 0.906 30 H 0.263 0.737 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.073 0.927 34 H 0.142 0.858 35 H 0.130 0.870 36 H 0.087 0.913 37 H 0.046 0.954 38 H 0.025 0.975 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.026 0.974 44 H 0.124 0.876 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.650 2.551 19.063 20.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.164 3.836 3 H 0.079 0.921 4 C -0.558 4.558 5 H 0.082 0.918 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.820 5.820 13 C -0.038 4.038 14 S 2.772 3.228 15 O -0.966 6.966 16 O -0.942 6.942 17 C -0.753 4.753 18 C -0.033 4.033 19 C -0.139 4.139 20 C -0.036 4.036 21 C -0.039 4.039 22 N -0.266 5.266 23 C -0.124 4.124 24 C -0.131 4.131 25 C -0.160 4.160 26 C -0.043 4.043 27 H 0.053 0.947 28 H 0.030 0.970 29 H 0.112 0.888 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.160 0.840 35 H 0.148 0.852 36 H 0.106 0.894 37 H 0.065 0.935 38 H 0.044 0.956 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.044 0.956 44 H 0.142 0.858 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.533 3.057 18.699 19.482 hybrid contribution -1.044 -0.808 -0.060 1.322 sum -5.577 2.249 18.639 19.585 Atomic orbital electron populations 1.22140 0.98289 0.99821 1.00696 1.18793 0.91294 0.93175 0.80320 0.92115 1.21327 1.31599 1.13010 0.89908 0.91839 1.24902 0.94979 0.95002 0.98978 1.69855 1.36603 1.22667 1.23793 0.86490 0.79304 0.79278 0.82310 1.20685 1.21127 1.19799 1.57420 1.70383 1.19550 1.34683 1.21193 1.01874 0.81797 0.98951 1.02240 0.74229 0.73516 0.72836 1.93504 1.68620 1.59354 1.75083 1.93571 1.73432 1.55936 1.71303 1.31470 1.21434 1.06651 1.15790 1.21018 0.91661 0.92448 0.98163 1.21107 0.98731 1.00071 0.94038 1.19915 0.95573 0.93645 0.94497 1.21165 0.93537 0.96845 0.92353 1.61970 1.24342 1.24210 1.16030 1.22402 0.96121 0.97185 0.96648 1.22517 0.97603 0.95512 0.97432 1.21073 0.99578 0.95463 0.99837 1.20848 0.93208 0.98864 0.91369 0.94702 0.97020 0.88771 0.92691 0.92959 0.93201 0.90832 0.83984 0.85182 0.89414 0.93539 0.95619 0.91150 0.91148 0.90602 0.91294 0.95560 0.85845 0.84587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 8.95 37.16 0.33 -3.05 16 2 C 0.27 6.46 2.62 -69.08 -0.18 6.28 16 3 H 0.06 1.61 6.91 -51.93 -0.36 1.25 16 4 C -0.52 -13.86 8.37 -34.44 -0.29 -14.15 16 5 H 0.06 1.69 7.65 -52.49 -0.40 1.29 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.54 11.32 55.43 0.63 -23.91 16 8 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 12 N -0.98 -20.34 3.06 -115.85 -0.35 -20.70 16 13 C 0.11 1.91 9.53 59.85 0.57 2.48 16 14 S 2.68 53.46 5.64 -107.50 -0.61 52.85 16 15 O -0.98 -20.06 16.36 -57.17 -0.94 -20.99 16 16 O -0.95 -22.04 15.84 -57.17 -0.91 -22.95 16 17 C -0.67 -11.15 5.97 -39.58 -0.24 -11.39 16 18 C -0.01 -0.22 9.52 -39.58 -0.38 -0.60 16 19 C -0.12 -1.61 9.70 -39.58 -0.38 -1.99 16 20 C -0.04 -0.43 4.88 -104.62 -0.51 -0.94 16 21 C 0.09 0.83 5.12 -4.97 -0.03 0.81 16 22 N -0.54 -5.11 5.01 -252.71 -1.27 -6.37 16 23 C 0.02 0.17 9.57 60.07 0.57 0.75 16 24 C 0.02 0.15 9.14 60.06 0.55 0.70 16 25 C -0.14 -1.70 7.97 -39.59 -0.32 -2.01 16 26 C -0.02 -0.34 9.52 -39.58 -0.38 -0.72 16 27 H 0.03 0.74 6.66 -51.93 -0.35 0.39 16 28 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 30 H 0.26 6.91 8.31 -40.82 -0.34 6.58 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.05 0.73 7.79 -51.92 -0.40 0.32 16 33 H 0.07 1.25 6.43 -51.93 -0.33 0.92 16 34 H 0.14 2.29 7.61 -52.48 -0.40 1.89 16 35 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 36 H 0.09 0.75 8.01 -51.93 -0.42 0.33 16 37 H 0.05 0.40 8.06 -51.93 -0.42 -0.02 16 38 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 39 H 0.07 0.45 8.12 -51.93 -0.42 0.02 16 40 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 41 H 0.08 0.75 6.17 -51.93 -0.32 0.43 16 42 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 43 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 44 H 0.12 1.17 8.03 -52.49 -0.42 0.74 16 45 H 0.14 1.75 7.62 -52.48 -0.40 1.35 16 LS Contribution 374.56 15.07 5.64 5.64 Total: -1.00 -31.78 374.56 -10.63 -42.41 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -7.05 Total: 0.22 kcal Atomic # 6 Polarization: -21.43 SS G_CDS: -0.76 Total: -22.20 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: -0.99 Total: -50.98 kcal Atomic # 8 Polarization: -42.10 SS G_CDS: -1.84 Total: -43.94 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 53.46 SS G_CDS: -0.61 Total: 52.85 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.78 -10.63 -42.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351569444.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.441 kcal (2) G-P(sol) polarization free energy of solvation -31.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds