Wall clock time and date at job start Tue Mar 31 2020 15:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1 6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1 7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47256 * 90.00491 * 8 6 4 10 10 H 1.48506 * 109.46930 * 210.00332 * 8 6 4 11 11 H 1.48499 * 109.47104 * 330.00193 * 8 6 4 12 12 N 1.46505 * 109.47212 * 120.00008 * 2 1 3 13 13 C 1.46498 * 119.99673 * 60.00290 * 12 2 1 14 14 S 1.65593 * 119.99939 * 239.99810 * 12 2 1 15 15 O 1.42101 * 106.40455 * 203.53915 * 14 12 2 16 16 O 1.42093 * 106.40554 * 336.46252 * 14 12 2 17 17 C 1.76201 * 107.21631 * 90.00236 * 14 12 2 18 18 C 1.38237 * 120.00131 * 269.72594 * 17 14 12 19 19 C 1.38237 * 120.00012 * 179.77161 * 18 17 14 20 20 C 1.38233 * 119.99561 * 0.47628 * 19 18 17 21 21 C 1.50708 * 119.99434 * 179.77495 * 20 19 18 22 22 N 1.46908 * 109.46753 * 270.02496 * 21 20 19 23 23 C 1.46902 * 110.99656 * 170.00235 * 22 21 20 24 24 C 1.46897 * 110.99818 * 293.95143 * 22 21 20 25 25 C 1.38226 * 120.00601 * 359.79778 * 20 19 18 26 26 C 1.38233 * 119.99972 * 359.95591 * 25 20 19 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 29 29 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 30 30 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 31 31 H 1.08992 * 109.47421 * 89.99857 * 13 12 2 32 32 H 1.09007 * 109.46720 * 209.99867 * 13 12 2 33 33 H 1.09003 * 109.47218 * 329.99648 * 13 12 2 34 34 H 1.08003 * 119.99600 * 359.97438 * 18 17 14 35 35 H 1.07999 * 119.99851 * 180.25307 * 19 18 17 36 36 H 1.09002 * 109.47450 * 30.02347 * 21 20 19 37 37 H 1.08992 * 109.47063 * 150.02614 * 21 20 19 38 38 H 1.09001 * 109.47350 * 59.99882 * 23 22 21 39 39 H 1.08998 * 109.47013 * 179.97438 * 23 22 21 40 40 H 1.09003 * 109.46879 * 299.99678 * 23 22 21 41 41 H 1.09004 * 109.47159 * 60.00754 * 24 22 21 42 42 H 1.09004 * 109.47121 * 180.02562 * 24 22 21 43 43 H 1.08995 * 109.47560 * 300.00549 * 24 22 21 44 44 H 1.07998 * 120.00334 * 179.97438 * 25 20 19 45 45 H 1.08003 * 120.00195 * 179.97438 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.3426 -2.1616 -4.4119 10 1 2.4864 -0.1413 -5.1123 11 1 3.6292 -1.7582 -3.7122 12 7 2.0183 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4279 14 16 2.9704 0.1141 2.2862 15 8 3.7119 -0.8789 2.9814 16 8 3.5794 1.1829 1.5748 17 6 1.8961 0.8534 3.4710 18 6 1.4157 2.1332 3.2649 19 6 0.5691 2.7113 4.1922 20 6 0.2107 2.0135 5.3304 21 6 -0.7082 2.6458 6.3438 22 7 0.0886 3.3759 7.3389 23 6 -0.7710 4.1977 8.2013 24 6 0.9073 2.4537 8.1370 25 6 0.6956 0.7360 5.5393 26 6 1.5381 0.1559 4.6096 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3635 0.5138 -0.8899 30 1 0.7092 1.1618 -3.4843 31 1 2.4157 -2.7377 0.9716 32 1 1.6238 -2.2853 2.5002 33 1 0.6904 -2.3002 0.9846 34 1 1.6993 2.6800 2.3777 35 1 0.1905 3.7096 4.0291 36 1 -1.3833 3.3378 5.8402 37 1 -1.2889 1.8695 6.8419 38 1 -1.4806 3.5564 8.7241 39 1 -0.1558 4.7270 8.9290 40 1 -1.3144 4.9192 7.5911 41 1 1.5842 1.9073 7.4801 42 1 1.4867 3.0203 8.8661 43 1 0.2585 1.7492 8.6574 44 1 0.4159 0.1910 6.4288 45 1 1.9173 -0.8421 4.7730 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351569444.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:45 Heat of formation + Delta-G solvation = -56.648922 kcal Electronic energy + Delta-G solvation = -26354.536230 eV Core-core repulsion = 22691.574885 eV Total energy + Delta-G solvation = -3662.961345 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.60833 -38.33846 -38.01516 -37.89130 -36.87891 -34.52700 -33.01463 -32.09341 -30.91141 -28.49841 -28.00634 -27.28610 -26.99320 -23.97892 -23.78836 -22.55158 -21.97346 -19.99448 -18.95866 -18.56495 -18.09902 -17.23322 -16.86523 -16.73287 -16.45275 -16.20035 -15.61076 -15.55749 -15.20985 -14.99945 -14.68267 -14.59922 -14.51207 -13.89705 -13.70326 -13.37469 -13.26785 -13.22984 -13.15828 -13.13061 -12.98800 -12.77425 -12.75753 -12.65294 -12.57502 -12.48841 -12.24812 -12.17296 -12.09555 -11.92973 -11.61736 -11.14067 -10.49573 -10.27130 -10.02280 -9.64379 -9.31805 -8.10730 -6.24215 -0.57571 -0.21305 0.31273 1.43153 1.45352 1.54917 2.05205 2.44287 2.48658 2.84591 3.17519 3.17802 3.32473 3.66292 3.75109 3.92955 4.10369 4.18312 4.28539 4.33505 4.43531 4.54035 4.55214 4.68141 4.68841 4.73583 4.79010 4.84187 4.96917 4.99056 5.02795 5.03487 5.04884 5.09467 5.13052 5.14621 5.19480 5.42164 5.62087 5.73546 5.83433 5.87813 5.99395 6.06207 6.12840 6.30452 6.82971 7.44510 8.93639 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.022735 B = 0.003274 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.278789 B = 8550.146415 C = 9096.005035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.272 3.728 3 H 0.028 0.972 4 C -0.538 4.538 5 H 0.057 0.943 6 C 0.018 3.982 7 N -0.913 5.913 8 Si 0.956 3.044 9 H -0.269 1.269 10 H -0.283 1.283 11 H -0.275 1.275 12 N -0.989 5.989 13 C 0.100 3.900 14 S 2.688 3.312 15 O -0.987 6.987 16 O -0.997 6.997 17 C -0.677 4.677 18 C -0.037 4.037 19 C -0.122 4.122 20 C -0.026 4.026 21 C 0.090 3.910 22 N -0.560 5.560 23 C 0.025 3.975 24 C 0.016 3.984 25 C -0.130 4.130 26 C -0.030 4.030 27 H 0.044 0.956 28 H 0.031 0.969 29 H 0.069 0.931 30 H 0.265 0.735 31 H 0.046 0.954 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.126 0.874 35 H 0.149 0.851 36 H 0.098 0.902 37 H 0.064 0.936 38 H 0.035 0.965 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.061 0.939 42 H 0.074 0.926 43 H 0.040 0.960 44 H 0.158 0.842 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.318 1.987 21.420 22.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.168 3.832 3 H 0.046 0.954 4 C -0.578 4.578 5 H 0.075 0.925 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.782 3.218 9 H -0.194 1.194 10 H -0.209 1.209 11 H -0.200 1.200 12 N -0.828 5.828 13 C -0.045 4.045 14 S 2.783 3.217 15 O -0.978 6.978 16 O -0.988 6.988 17 C -0.767 4.767 18 C -0.056 4.056 19 C -0.141 4.141 20 C -0.026 4.026 21 C -0.037 4.037 22 N -0.285 5.285 23 C -0.122 4.122 24 C -0.132 4.132 25 C -0.149 4.149 26 C -0.050 4.050 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.144 0.856 35 H 0.167 0.833 36 H 0.116 0.884 37 H 0.082 0.918 38 H 0.054 0.946 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.080 0.920 42 H 0.093 0.907 43 H 0.058 0.942 44 H 0.176 0.824 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -6.172 2.453 21.030 22.054 hybrid contribution -0.554 -0.566 -0.617 1.003 sum -6.726 1.888 20.413 21.575 Atomic orbital electron populations 1.21930 0.96917 1.00330 1.00415 1.18456 0.92198 0.91565 0.80983 0.95438 1.21642 1.31722 1.13072 0.91359 0.92452 1.25632 0.95213 0.95705 1.01611 1.69971 1.37297 1.23606 1.24383 0.85593 0.78786 0.78440 0.79030 1.19418 1.20898 1.19998 1.57279 1.70298 1.20872 1.34350 1.21422 1.01929 0.80001 1.01196 1.01608 0.74376 0.72777 0.72914 1.93472 1.69531 1.59761 1.74994 1.93507 1.75194 1.57198 1.72903 1.30770 1.22598 1.07290 1.15993 1.21029 0.93229 0.92553 0.98798 1.21338 0.97917 1.00985 0.93896 1.20306 0.94669 0.93462 0.94201 1.21201 0.92993 0.97584 0.91946 1.61948 1.25089 1.24609 1.16807 1.22436 0.96125 0.97109 0.96566 1.22525 0.97642 0.95751 0.97268 1.21438 0.97959 0.95503 1.00044 1.21105 0.93565 0.99440 0.90851 0.93665 0.94998 0.91235 0.92591 0.93541 0.89921 0.90180 0.85647 0.83320 0.88354 0.91819 0.94644 0.90642 0.90670 0.91998 0.90718 0.94192 0.82425 0.83261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.20 8.95 71.98 0.64 -5.56 16 2 C 0.27 13.58 2.62 44.24 0.12 13.69 16 3 H 0.03 1.56 6.91 -2.39 -0.02 1.54 16 4 C -0.54 -29.46 8.37 25.60 0.21 -29.25 16 5 H 0.06 3.12 7.65 -2.91 -0.02 3.10 16 6 C 0.02 1.00 5.30 84.65 0.45 1.45 16 7 N -0.91 -51.45 11.32 21.45 0.24 -51.21 16 8 Si 0.96 43.53 29.54 68.60 2.03 45.55 16 9 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 12 N -0.99 -41.75 3.06 -520.44 -1.59 -43.34 16 13 C 0.10 3.46 9.53 127.77 1.22 4.68 16 14 S 2.69 110.17 5.64 -56.49 -0.32 109.85 16 15 O -0.99 -40.90 16.36 -128.00 -2.09 -42.99 16 16 O -1.00 -48.95 15.84 -128.00 -2.03 -50.98 16 17 C -0.68 -22.47 5.97 22.27 0.13 -22.34 16 18 C -0.04 -1.17 9.52 22.27 0.21 -0.96 16 19 C -0.12 -3.08 9.70 22.27 0.22 -2.87 16 20 C -0.03 -0.54 4.88 -19.87 -0.10 -0.63 16 21 C 0.09 1.36 5.12 85.56 0.44 1.79 16 22 N -0.56 -8.72 5.01 -953.44 -4.78 -13.50 16 23 C 0.03 0.27 9.57 127.69 1.22 1.50 16 24 C 0.02 0.23 9.14 127.69 1.17 1.39 16 25 C -0.13 -2.72 7.97 22.27 0.18 -2.54 16 26 C -0.03 -0.80 9.52 22.27 0.21 -0.59 16 27 H 0.04 1.91 6.66 -2.39 -0.02 1.89 16 28 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.07 3.52 6.07 -2.39 -0.01 3.51 16 30 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 31 H 0.05 1.63 8.14 -2.39 -0.02 1.62 16 32 H 0.08 2.28 7.79 -2.38 -0.02 2.26 16 33 H 0.08 2.65 6.43 -2.39 -0.02 2.63 16 34 H 0.13 4.34 7.61 -2.91 -0.02 4.32 16 35 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 36 H 0.10 1.30 8.01 -2.39 -0.02 1.28 16 37 H 0.06 0.78 8.06 -2.39 -0.02 0.76 16 38 H 0.03 0.32 8.14 -2.39 -0.02 0.30 16 39 H 0.07 0.74 8.12 -2.39 -0.02 0.72 16 40 H 0.07 0.74 8.12 -2.39 -0.02 0.72 16 41 H 0.06 1.04 6.17 -2.39 -0.01 1.02 16 42 H 0.07 0.95 8.12 -2.39 -0.02 0.93 16 43 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 44 H 0.16 2.22 8.03 -2.91 -0.02 2.20 16 45 H 0.15 3.50 7.62 -2.91 -0.02 3.48 16 Total: -1.00 -69.94 374.56 -1.25 -71.20 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 0.97 Total: 15.66 kcal Atomic # 6 Polarization: -46.56 SS G_CDS: 6.32 Total: -40.24 kcal Atomic # 7 Polarization: -101.92 SS G_CDS: -6.13 Total: -108.05 kcal Atomic # 8 Polarization: -89.86 SS G_CDS: -4.12 Total: -93.98 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: 110.17 SS G_CDS: -0.32 Total: 109.85 kcal Total: -69.94 -1.25 -71.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351569444.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.546 kcal (2) G-P(sol) polarization free energy of solvation -69.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds