Wall clock time and date at job start Tue Mar 31 2020 14:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46777 * 2 1 4 4 N 1.46497 * 109.47139 * 120.00218 * 2 1 3 5 5 S 1.65600 * 120.00084 * 264.76072 * 4 2 1 6 6 O 1.42092 * 106.40200 * 176.84895 * 5 4 2 7 7 O 1.42105 * 106.40136 * 309.76952 * 5 4 2 8 8 N 1.65595 * 107.22058 * 63.30710 * 5 4 2 9 9 C 1.46500 * 120.00291 * 263.89238 * 8 5 4 10 10 C 1.46507 * 119.99818 * 83.88535 * 8 5 4 11 11 C 1.50695 * 109.47002 * 94.28637 * 10 8 5 12 12 H 1.08007 * 119.99988 * 4.92091 * 11 10 8 13 13 C 1.37875 * 120.00442 * 184.92168 * 11 10 8 14 14 N 1.31506 * 120.00538 * 180.02562 * 13 11 10 15 15 Si 1.86804 * 119.99619 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47308 * 89.99770 * 15 13 11 17 17 H 1.48499 * 109.47263 * 210.00109 * 15 13 11 18 18 H 1.48501 * 109.46937 * 329.99716 * 15 13 11 19 19 C 1.52996 * 109.46761 * 240.00172 * 2 1 3 20 20 H 1.08999 * 109.47607 * 304.57623 * 19 2 1 21 21 C 1.53005 * 109.46992 * 64.58127 * 19 2 1 22 22 C 1.50697 * 109.47095 * 184.57583 * 19 2 1 23 23 C 1.38243 * 120.00071 * 301.98768 * 22 19 2 24 24 C 1.38232 * 119.99849 * 179.80702 * 23 22 19 25 25 C 1.38231 * 120.00419 * 0.39741 * 24 23 22 26 26 C 1.38236 * 119.99841 * 359.85679 * 25 24 23 27 27 C 1.38236 * 120.00224 * 122.25554 * 22 19 2 28 28 H 1.09006 * 109.47124 * 179.76416 * 1 2 3 29 29 H 1.09006 * 109.46971 * 299.75970 * 1 2 3 30 30 H 1.08994 * 109.47687 * 59.76247 * 1 2 3 31 31 H 0.96998 * 120.00135 * 84.48844 * 4 2 1 32 32 H 1.08995 * 109.47360 * 89.99648 * 9 8 5 33 33 H 1.09006 * 109.47230 * 209.99859 * 9 8 5 34 34 H 1.08999 * 109.46640 * 329.99511 * 9 8 5 35 35 H 1.09004 * 109.46783 * 214.28364 * 10 8 5 36 36 H 1.08992 * 109.46930 * 334.28694 * 10 8 5 37 37 H 0.96998 * 120.00617 * 180.02562 * 14 13 11 38 38 H 1.08995 * 109.47770 * 59.99591 * 21 19 2 39 39 H 1.09005 * 109.47106 * 179.97438 * 21 19 2 40 40 H 1.09005 * 109.46894 * 299.98992 * 21 19 2 41 41 H 1.08001 * 119.99766 * 359.97438 * 23 22 19 42 42 H 1.08008 * 119.99675 * 180.22596 * 24 23 22 43 43 H 1.07995 * 120.00201 * 179.83513 * 25 24 23 44 44 H 1.07997 * 120.00094 * 179.97438 * 26 25 24 45 45 H 1.08001 * 119.99957 * 359.97438 * 27 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 16 2.4178 0.1776 2.5485 6 8 2.7786 -0.7715 3.5426 7 8 3.2842 1.2177 2.1161 8 7 1.0348 0.9137 3.0847 9 6 0.7472 2.2988 2.7039 10 6 0.0987 0.1797 3.9400 11 6 0.4045 0.4724 5.3863 12 1 1.1619 1.1987 5.6419 13 6 -0.2826 -0.1870 6.3833 14 7 -0.0162 0.0687 7.6454 15 14 -1.5921 -1.4438 5.9413 16 1 -0.9696 -2.7869 5.8241 17 1 -2.6308 -1.4704 7.0021 18 1 -2.2168 -1.0730 4.6461 19 6 2.0399 -0.7212 -1.2493 20 1 1.6112 -1.7225 -1.2913 21 6 1.6261 0.0636 -2.4958 22 6 3.5426 -0.8202 -1.1940 23 6 4.3077 0.3269 -1.0938 24 6 5.6859 0.2358 -1.0391 25 6 6.2996 -1.0016 -1.0928 26 6 5.5348 -2.1483 -1.1982 27 6 4.1564 -2.0576 -1.2490 28 1 -0.3634 -1.0277 -0.0042 29 1 -0.3633 0.5101 0.8922 30 1 -0.3634 0.5175 -0.8878 31 1 2.1040 -1.6568 1.1973 32 1 0.1755 2.3093 1.7760 33 1 0.1686 2.7799 3.4926 34 1 1.6836 2.8378 2.5599 35 1 -0.9210 0.4916 3.7138 36 1 0.2008 -0.8897 3.7562 37 1 -0.4993 -0.3955 8.3469 38 1 2.0548 1.0648 -2.4539 39 1 1.9898 -0.4500 -3.3859 40 1 0.5391 0.1351 -2.5359 41 1 3.8284 1.2940 -1.0556 42 1 6.2834 1.1318 -0.9571 43 1 7.3764 -1.0726 -1.0527 44 1 6.0142 -3.1151 -1.2406 45 1 3.5589 -2.9535 -1.3312 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353530650.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:36 Heat of formation + Delta-G solvation = -56.113219 kcal Electronic energy + Delta-G solvation = -27140.641789 eV Core-core repulsion = 23477.703674 eV Total energy + Delta-G solvation = -3662.938115 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.75774 -37.19292 -36.50456 -35.62016 -35.14236 -32.97027 -32.37185 -30.91923 -30.27514 -28.45459 -28.18465 -25.14815 -24.68151 -22.86744 -22.00239 -21.88612 -20.12873 -18.94182 -17.38786 -16.98828 -16.93341 -16.49224 -16.14624 -15.44584 -15.20496 -14.64035 -14.25816 -14.14756 -13.94689 -13.64448 -13.42510 -13.25980 -13.17704 -12.86378 -12.57801 -12.40374 -12.33525 -12.14943 -11.89856 -11.72004 -11.69165 -11.44886 -11.35334 -11.29221 -11.19715 -11.03763 -10.83222 -10.64672 -10.58779 -10.44385 -10.26831 -9.55265 -9.35412 -8.90252 -8.69192 -8.58363 -8.11050 -6.07270 -4.06256 1.21695 1.35409 1.41816 3.26638 3.31801 3.33799 3.48861 3.77323 4.13869 4.38664 4.45451 4.56435 4.90005 4.98197 4.99120 5.05534 5.11199 5.20439 5.24629 5.25631 5.26809 5.39106 5.50276 5.55904 5.60142 5.68120 5.78044 5.79121 5.88729 5.92127 6.00057 6.04353 6.16162 6.26956 6.32303 6.44402 6.46740 6.53236 6.62072 6.70922 7.00425 7.02593 7.18778 7.46403 7.58727 8.50148 8.98217 9.51928 11.06486 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.018282 B = 0.004076 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.183094 B = 6867.452689 C = 7208.847164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.158 3.842 3 H 0.088 0.912 4 N -1.126 6.126 5 S 2.781 3.219 6 O -0.963 6.963 7 O -0.991 6.991 8 N -0.991 5.991 9 C 0.093 3.907 10 C 0.231 3.769 11 C -0.531 4.531 12 H 0.078 0.922 13 C 0.073 3.927 14 N -0.895 5.895 15 Si 0.872 3.128 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.265 1.265 19 C -0.056 4.056 20 H 0.084 0.916 21 C -0.144 4.144 22 C -0.071 4.071 23 C -0.103 4.103 24 C -0.115 4.115 25 C -0.128 4.128 26 C -0.122 4.122 27 C -0.121 4.121 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.411 0.589 32 H 0.040 0.960 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.032 0.968 36 H 0.025 0.975 37 H 0.265 0.735 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.587 -1.199 -23.158 23.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.051 3.949 3 H 0.106 0.894 4 N -0.884 5.884 5 S 2.789 3.211 6 O -0.947 6.947 7 O -0.975 6.975 8 N -0.833 5.833 9 C -0.054 4.054 10 C 0.108 3.892 11 C -0.570 4.570 12 H 0.096 0.904 13 C -0.129 4.129 14 N -0.533 5.533 15 Si 0.698 3.302 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.190 1.190 19 C -0.076 4.076 20 H 0.102 0.898 21 C -0.202 4.202 22 C -0.071 4.071 23 C -0.121 4.121 24 C -0.133 4.133 25 C -0.146 4.146 26 C -0.140 4.140 27 C -0.139 4.139 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.244 0.756 32 H 0.058 0.942 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.050 0.950 36 H 0.043 0.957 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.379 -0.962 -22.559 23.000 hybrid contribution -1.011 -1.208 -0.034 1.576 sum 3.368 -2.170 -22.593 22.946 Atomic orbital electron populations 1.22469 0.95145 1.03052 1.03009 1.20740 0.93763 0.96256 0.84174 0.89358 1.56257 1.83945 1.19655 1.28550 1.01981 0.73357 0.73309 0.72475 1.93652 1.81908 1.62781 1.56347 1.93525 1.63283 1.57799 1.82877 1.57414 1.42224 1.21166 1.62515 1.21410 1.01594 0.82543 0.99805 1.19370 0.88738 0.90586 0.90524 1.21384 1.22322 1.24859 0.88445 0.90429 1.24872 0.96825 0.96409 0.94843 1.69890 1.41742 1.42529 0.99149 0.86929 0.81929 0.82715 0.78582 1.19838 1.20965 1.19001 1.20466 0.91492 1.00761 0.94854 0.89805 1.21881 1.01618 1.00300 0.96380 1.19740 0.94867 0.93294 0.99240 1.21004 0.93783 0.98263 0.99012 1.21149 0.94904 0.97683 0.99592 1.21131 0.99753 0.92785 1.00909 1.21098 0.93994 0.98344 1.00605 1.21029 0.94731 0.96884 1.01211 0.91935 0.91030 0.91438 0.75626 0.94170 0.90257 0.91268 0.95006 0.95698 0.92541 0.92120 0.92243 0.91673 0.86023 0.86153 0.86382 0.86337 0.86324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.81 9.26 37.16 0.34 -1.47 16 2 C 0.16 1.81 2.24 -67.93 -0.15 1.65 16 3 H 0.09 1.05 6.86 -51.93 -0.36 0.69 16 4 N -1.13 -16.15 4.96 -4.89 -0.02 -16.17 16 5 S 2.78 54.51 6.03 -107.50 -0.65 53.87 16 6 O -0.96 -23.49 17.35 -57.17 -0.99 -24.48 16 7 O -0.99 -20.11 16.06 -57.17 -0.92 -21.02 16 8 N -0.99 -19.69 2.76 -123.05 -0.34 -20.03 16 9 C 0.09 1.52 10.49 59.85 0.63 2.15 16 10 C 0.23 5.37 4.13 -5.19 -0.02 5.35 16 11 C -0.53 -15.18 9.94 -34.44 -0.34 -15.52 16 12 H 0.08 2.44 8.06 -52.48 -0.42 2.02 16 13 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 14 N -0.89 -27.69 13.96 55.43 0.77 -26.92 16 15 Si 0.87 21.09 27.37 -169.99 -4.65 16.44 16 16 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.27 -5.90 6.69 56.52 0.38 -5.53 16 19 C -0.06 -0.53 2.25 -91.77 -0.21 -0.73 16 20 H 0.08 0.71 7.88 -51.93 -0.41 0.30 16 21 C -0.14 -1.09 8.77 37.16 0.33 -0.77 16 22 C -0.07 -0.80 4.25 -104.62 -0.44 -1.25 16 23 C -0.10 -1.25 8.76 -39.58 -0.35 -1.60 16 24 C -0.12 -1.37 10.05 -39.59 -0.40 -1.77 16 25 C -0.13 -1.42 10.05 -39.58 -0.40 -1.82 16 26 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 27 C -0.12 -1.31 9.67 -39.58 -0.38 -1.69 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.85 6.34 -51.93 -0.33 0.52 16 30 H 0.07 0.54 6.56 -51.93 -0.34 0.19 16 31 H 0.41 5.32 8.84 -34.47 -0.30 5.01 16 32 H 0.04 0.51 7.00 -51.93 -0.36 0.15 16 33 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 34 H 0.07 1.10 7.00 -51.93 -0.36 0.74 16 35 H 0.03 0.70 7.50 -51.93 -0.39 0.31 16 36 H 0.03 0.58 6.96 -51.93 -0.36 0.22 16 37 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 38 H 0.06 0.46 7.51 -51.93 -0.39 0.07 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.42 6.56 -51.93 -0.34 0.08 16 41 H 0.12 1.41 7.16 -52.49 -0.38 1.03 16 42 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 43 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 44 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 45 H 0.12 1.05 7.95 -52.49 -0.42 0.64 16 LS Contribution 373.76 15.07 5.63 5.63 Total: -1.00 -35.60 373.76 -9.91 -45.51 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -6.86 Total: 4.33 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: -1.89 Total: -17.16 kcal Atomic # 7 Polarization: -63.53 SS G_CDS: 0.41 Total: -63.12 kcal Atomic # 8 Polarization: -43.59 SS G_CDS: -1.91 Total: -45.50 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.65 Total: 16.44 kcal Atomic # 16 Polarization: 54.51 SS G_CDS: -0.65 Total: 53.87 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.60 -9.91 -45.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353530650.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.600 kcal (2) G-P(sol) polarization free energy of solvation -35.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds