Wall clock time and date at job start Tue Mar 31 2020 14:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46777 * 2 1 4 4 N 1.46497 * 109.47139 * 120.00218 * 2 1 3 5 5 S 1.65600 * 120.00084 * 264.76072 * 4 2 1 6 6 O 1.42092 * 106.40200 * 176.84895 * 5 4 2 7 7 O 1.42105 * 106.40136 * 309.76952 * 5 4 2 8 8 N 1.65595 * 107.22058 * 63.30710 * 5 4 2 9 9 C 1.46500 * 120.00291 * 263.89238 * 8 5 4 10 10 C 1.46507 * 119.99818 * 83.88535 * 8 5 4 11 11 C 1.50695 * 109.47002 * 94.28637 * 10 8 5 12 12 H 1.08007 * 119.99988 * 4.92091 * 11 10 8 13 13 C 1.37875 * 120.00442 * 184.92168 * 11 10 8 14 14 N 1.31506 * 120.00538 * 180.02562 * 13 11 10 15 15 Si 1.86804 * 119.99619 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47308 * 89.99770 * 15 13 11 17 17 H 1.48499 * 109.47263 * 210.00109 * 15 13 11 18 18 H 1.48501 * 109.46937 * 329.99716 * 15 13 11 19 19 C 1.52996 * 109.46761 * 240.00172 * 2 1 3 20 20 H 1.08999 * 109.47607 * 304.57623 * 19 2 1 21 21 C 1.53005 * 109.46992 * 64.58127 * 19 2 1 22 22 C 1.50697 * 109.47095 * 184.57583 * 19 2 1 23 23 C 1.38243 * 120.00071 * 301.98768 * 22 19 2 24 24 C 1.38232 * 119.99849 * 179.80702 * 23 22 19 25 25 C 1.38231 * 120.00419 * 0.39741 * 24 23 22 26 26 C 1.38236 * 119.99841 * 359.85679 * 25 24 23 27 27 C 1.38236 * 120.00224 * 122.25554 * 22 19 2 28 28 H 1.09006 * 109.47124 * 179.76416 * 1 2 3 29 29 H 1.09006 * 109.46971 * 299.75970 * 1 2 3 30 30 H 1.08994 * 109.47687 * 59.76247 * 1 2 3 31 31 H 0.96998 * 120.00135 * 84.48844 * 4 2 1 32 32 H 1.08995 * 109.47360 * 89.99648 * 9 8 5 33 33 H 1.09006 * 109.47230 * 209.99859 * 9 8 5 34 34 H 1.08999 * 109.46640 * 329.99511 * 9 8 5 35 35 H 1.09004 * 109.46783 * 214.28364 * 10 8 5 36 36 H 1.08992 * 109.46930 * 334.28694 * 10 8 5 37 37 H 0.96998 * 120.00617 * 180.02562 * 14 13 11 38 38 H 1.08995 * 109.47770 * 59.99591 * 21 19 2 39 39 H 1.09005 * 109.47106 * 179.97438 * 21 19 2 40 40 H 1.09005 * 109.46894 * 299.98992 * 21 19 2 41 41 H 1.08001 * 119.99766 * 359.97438 * 23 22 19 42 42 H 1.08008 * 119.99675 * 180.22596 * 24 23 22 43 43 H 1.07995 * 120.00201 * 179.83513 * 25 24 23 44 44 H 1.07997 * 120.00094 * 179.97438 * 26 25 24 45 45 H 1.08001 * 119.99957 * 359.97438 * 27 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 16 2.4178 0.1776 2.5485 6 8 2.7786 -0.7715 3.5426 7 8 3.2842 1.2177 2.1161 8 7 1.0348 0.9137 3.0847 9 6 0.7472 2.2988 2.7039 10 6 0.0987 0.1797 3.9400 11 6 0.4045 0.4724 5.3863 12 1 1.1619 1.1987 5.6419 13 6 -0.2826 -0.1870 6.3833 14 7 -0.0162 0.0687 7.6454 15 14 -1.5921 -1.4438 5.9413 16 1 -0.9696 -2.7869 5.8241 17 1 -2.6308 -1.4704 7.0021 18 1 -2.2168 -1.0730 4.6461 19 6 2.0399 -0.7212 -1.2493 20 1 1.6112 -1.7225 -1.2913 21 6 1.6261 0.0636 -2.4958 22 6 3.5426 -0.8202 -1.1940 23 6 4.3077 0.3269 -1.0938 24 6 5.6859 0.2358 -1.0391 25 6 6.2996 -1.0016 -1.0928 26 6 5.5348 -2.1483 -1.1982 27 6 4.1564 -2.0576 -1.2490 28 1 -0.3634 -1.0277 -0.0042 29 1 -0.3633 0.5101 0.8922 30 1 -0.3634 0.5175 -0.8878 31 1 2.1040 -1.6568 1.1973 32 1 0.1755 2.3093 1.7760 33 1 0.1686 2.7799 3.4926 34 1 1.6836 2.8378 2.5599 35 1 -0.9210 0.4916 3.7138 36 1 0.2008 -0.8897 3.7562 37 1 -0.4993 -0.3955 8.3469 38 1 2.0548 1.0648 -2.4539 39 1 1.9898 -0.4500 -3.3859 40 1 0.5391 0.1351 -2.5359 41 1 3.8284 1.2940 -1.0556 42 1 6.2834 1.1318 -0.9571 43 1 7.3764 -1.0726 -1.0527 44 1 6.0142 -3.1151 -1.2406 45 1 3.5589 -2.9535 -1.3312 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353530650.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:35 Heat of formation + Delta-G solvation = -81.429517 kcal Electronic energy + Delta-G solvation = -27141.739586 eV Core-core repulsion = 23477.703674 eV Total energy + Delta-G solvation = -3664.035912 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.57662 -38.35899 -37.91890 -37.25455 -36.82850 -34.50198 -33.90797 -31.74461 -31.14878 -30.26342 -29.02117 -26.76693 -25.43725 -23.84501 -23.69215 -22.82964 -20.99178 -20.35045 -19.16496 -18.68824 -18.25135 -17.69353 -17.38255 -16.73424 -16.24972 -16.10873 -15.52382 -15.34530 -14.96732 -14.71518 -14.69733 -14.48181 -14.22241 -14.09818 -14.02421 -13.71073 -13.38144 -13.24449 -13.14783 -13.11984 -12.99038 -12.95680 -12.78580 -12.38117 -12.35723 -12.28965 -12.22513 -12.03144 -11.93462 -11.69891 -11.58688 -11.38322 -10.77303 -10.45930 -9.75721 -9.75406 -9.52066 -8.28015 -6.33688 -0.31285 0.51793 0.56538 1.36741 1.41293 1.49677 2.06306 2.36296 2.66481 2.93525 3.06283 3.48250 3.67877 3.82576 3.99352 4.12447 4.19535 4.27127 4.31988 4.36505 4.45999 4.60997 4.62202 4.65824 4.70624 4.73108 4.78851 4.85222 4.97010 5.05916 5.10235 5.14013 5.19175 5.23320 5.24143 5.35267 5.47266 5.50444 5.54569 5.64940 5.68981 5.74460 5.79451 6.17056 6.19202 6.33246 6.69433 7.29251 8.89948 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.018282 B = 0.004076 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.183094 B = 6867.452689 C = 7208.847164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.151 3.849 3 H 0.083 0.917 4 N -1.110 6.110 5 S 2.793 3.207 6 O -1.019 7.019 7 O -1.005 7.005 8 N -0.997 5.997 9 C 0.086 3.914 10 C 0.240 3.760 11 C -0.544 4.544 12 H 0.025 0.975 13 C 0.005 3.995 14 N -0.951 5.951 15 Si 0.944 3.056 16 H -0.271 1.271 17 H -0.280 1.280 18 H -0.224 1.224 19 C -0.049 4.049 20 H 0.100 0.900 21 C -0.141 4.141 22 C -0.079 4.079 23 C -0.123 4.123 24 C -0.137 4.137 25 C -0.141 4.141 26 C -0.132 4.132 27 C -0.130 4.130 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.095 0.905 31 H 0.420 0.580 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.032 0.968 37 H 0.267 0.733 38 H 0.057 0.943 39 H 0.064 0.936 40 H 0.082 0.918 41 H 0.121 0.879 42 H 0.126 0.874 43 H 0.134 0.866 44 H 0.139 0.861 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.387 -2.614 -26.350 26.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.045 3.955 3 H 0.101 0.899 4 N -0.872 5.872 5 S 2.802 3.198 6 O -1.003 7.003 7 O -0.988 6.988 8 N -0.838 5.838 9 C -0.059 4.059 10 C 0.115 3.885 11 C -0.583 4.583 12 H 0.043 0.957 13 C -0.193 4.193 14 N -0.591 5.591 15 Si 0.766 3.234 16 H -0.196 1.196 17 H -0.205 1.205 18 H -0.147 1.147 19 C -0.069 4.069 20 H 0.119 0.881 21 C -0.199 4.199 22 C -0.079 4.079 23 C -0.141 4.141 24 C -0.155 4.155 25 C -0.159 4.159 26 C -0.150 4.150 27 C -0.148 4.148 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.113 0.887 31 H 0.255 0.745 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.050 0.950 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.101 0.899 41 H 0.139 0.861 42 H 0.144 0.856 43 H 0.152 0.848 44 H 0.156 0.844 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.189 -2.343 -25.785 25.983 hybrid contribution -0.187 -0.677 0.915 1.153 sum 2.002 -3.020 -24.870 25.132 Atomic orbital electron populations 1.22473 0.93474 1.03913 1.03669 1.21059 0.95055 0.95984 0.83441 0.89935 1.55789 1.83823 1.19873 1.27731 1.01309 0.73204 0.72712 0.72619 1.93574 1.83064 1.64307 1.59356 1.93502 1.63859 1.58416 1.83044 1.57305 1.41475 1.22496 1.62554 1.21637 1.02149 0.80701 1.01428 1.19157 0.90441 0.91355 0.87568 1.21744 1.20912 1.23648 0.91977 0.95682 1.25976 0.99843 0.99020 0.94440 1.70076 1.43784 1.44479 1.00747 0.85779 0.78446 0.78949 0.80246 1.19615 1.20513 1.14663 1.20486 0.90190 1.01736 0.94502 0.88140 1.21879 1.02736 0.99841 0.95406 1.19997 0.95976 0.93110 0.98843 1.21173 0.94138 0.98828 0.99960 1.21404 0.95334 0.98496 1.00261 1.21418 1.00854 0.92754 1.00856 1.21449 0.94378 0.99129 1.00010 1.21368 0.95096 0.97571 1.00733 0.91045 0.92415 0.88684 0.74503 0.89708 0.91262 0.91377 0.92345 0.95029 0.92414 0.92439 0.91678 0.89885 0.86144 0.85631 0.84827 0.84352 0.84219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.85 9.26 71.98 0.67 -2.18 16 2 C 0.15 3.01 2.24 44.99 0.10 3.11 16 3 H 0.08 1.77 6.86 -2.38 -0.02 1.75 16 4 N -1.11 -29.75 4.96 -169.39 -0.84 -30.59 16 5 S 2.79 109.06 6.03 -56.49 -0.34 108.72 16 6 O -1.02 -50.80 17.35 -128.00 -2.22 -53.02 16 7 O -1.01 -41.02 16.06 -128.00 -2.06 -43.08 16 8 N -1.00 -38.84 2.76 -543.22 -1.50 -40.34 16 9 C 0.09 2.71 10.49 127.77 1.34 4.05 16 10 C 0.24 10.80 4.13 85.63 0.35 11.15 16 11 C -0.54 -31.81 9.94 25.60 0.25 -31.56 16 12 H 0.02 1.67 8.06 -2.91 -0.02 1.64 16 13 C 0.00 0.27 5.47 84.66 0.46 0.74 16 14 N -0.95 -60.87 13.96 21.45 0.30 -60.57 16 15 Si 0.94 42.61 27.37 68.60 1.88 44.49 16 16 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 17 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 18 H -0.22 -8.59 6.69 99.48 0.67 -7.92 16 19 C -0.05 -0.78 2.25 -11.54 -0.03 -0.80 16 20 H 0.10 1.28 7.88 -2.39 -0.02 1.26 16 21 C -0.14 -1.65 8.77 71.98 0.63 -1.02 16 22 C -0.08 -1.64 4.25 -19.86 -0.08 -1.72 16 23 C -0.12 -2.92 8.76 22.27 0.20 -2.73 16 24 C -0.14 -3.26 10.05 22.27 0.22 -3.03 16 25 C -0.14 -3.04 10.05 22.27 0.22 -2.82 16 26 C -0.13 -2.64 10.05 22.27 0.22 -2.42 16 27 C -0.13 -2.54 9.67 22.27 0.22 -2.33 16 28 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 29 H 0.06 1.12 6.34 -2.38 -0.02 1.10 16 30 H 0.09 1.02 6.56 -2.39 -0.02 1.01 16 31 H 0.42 9.99 8.84 -96.75 -0.86 9.13 16 32 H 0.08 1.91 7.00 -2.39 -0.02 1.90 16 33 H 0.07 2.31 8.07 -2.38 -0.02 2.29 16 34 H 0.07 2.14 7.00 -2.39 -0.02 2.12 16 35 H 0.06 2.35 7.50 -2.39 -0.02 2.33 16 36 H 0.03 1.40 6.96 -2.39 -0.02 1.38 16 37 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 38 H 0.06 0.72 7.51 -2.39 -0.02 0.70 16 39 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 40 H 0.08 0.68 6.56 -2.38 -0.02 0.67 16 41 H 0.12 2.75 7.16 -2.91 -0.02 2.73 16 42 H 0.13 2.66 8.06 -2.91 -0.02 2.64 16 43 H 0.13 2.31 8.06 -2.91 -0.02 2.29 16 44 H 0.14 2.11 8.06 -2.91 -0.02 2.08 16 45 H 0.14 2.05 7.95 -2.91 -0.02 2.02 16 Total: -1.00 -81.11 373.76 0.09 -81.02 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: 0.09 Total: 24.92 kcal Atomic # 6 Polarization: -36.33 SS G_CDS: 4.78 Total: -31.55 kcal Atomic # 7 Polarization: -129.46 SS G_CDS: -2.04 Total: -131.50 kcal Atomic # 8 Polarization: -91.82 SS G_CDS: -4.28 Total: -96.10 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 1.88 Total: 44.49 kcal Atomic # 16 Polarization: 109.06 SS G_CDS: -0.34 Total: 108.72 kcal Total: -81.11 0.09 -81.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353530650.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.414 kcal (2) G-P(sol) polarization free energy of solvation -81.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds