Wall clock time and date at job start Tue Mar 31 2020 14:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47139 * 2 1 4 4 N 1.46498 * 109.47038 * 239.99712 * 2 1 3 5 5 S 1.65596 * 119.99862 * 95.00650 * 4 2 1 6 6 O 1.42101 * 106.40045 * 311.45357 * 5 4 2 7 7 O 1.42106 * 106.40310 * 178.53630 * 5 4 2 8 8 N 1.65597 * 107.22389 * 64.99463 * 5 4 2 9 9 C 1.46506 * 119.99791 * 89.99756 * 8 5 4 10 10 C 1.46498 * 119.99910 * 270.27980 * 8 5 4 11 11 C 1.50703 * 109.46964 * 264.71709 * 10 8 5 12 12 H 1.08004 * 119.99711 * 0.02562 * 11 10 8 13 13 C 1.37871 * 119.99968 * 180.02562 * 11 10 8 14 14 N 1.31509 * 120.00248 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99858 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47477 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47250 * 120.00270 * 15 13 11 18 18 H 1.48506 * 109.47052 * 239.99610 * 15 13 11 19 19 C 1.53006 * 109.47020 * 119.99647 * 2 1 3 20 20 H 1.09002 * 109.46876 * 60.00192 * 19 2 1 21 21 C 1.52997 * 109.47020 * 180.02562 * 19 2 1 22 22 C 1.50696 * 109.47003 * 300.00313 * 19 2 1 23 23 C 1.38243 * 120.00133 * 299.72344 * 22 19 2 24 24 C 1.38236 * 119.99897 * 179.79119 * 23 22 19 25 25 C 1.38232 * 120.00020 * 0.44053 * 24 23 22 26 26 C 1.38228 * 119.99975 * 359.81410 * 25 24 23 27 27 C 1.38230 * 120.00374 * 359.97438 * 26 25 24 28 28 H 1.09002 * 109.47139 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47385 * 300.00194 * 1 2 3 30 30 H 1.09006 * 109.47251 * 60.00128 * 1 2 3 31 31 H 0.97000 * 120.00220 * 274.99792 * 4 2 1 32 32 H 1.08999 * 109.46892 * 90.00624 * 9 8 5 33 33 H 1.09000 * 109.46803 * 209.99797 * 9 8 5 34 34 H 1.09000 * 109.47214 * 330.00591 * 9 8 5 35 35 H 1.08990 * 109.47572 * 24.71903 * 10 8 5 36 36 H 1.09003 * 109.47280 * 144.72260 * 10 8 5 37 37 H 0.97000 * 120.00205 * 179.97438 * 14 13 11 38 38 H 1.08999 * 109.47385 * 300.00158 * 21 19 2 39 39 H 1.09002 * 109.47139 * 60.00353 * 21 19 2 40 40 H 1.09002 * 109.46796 * 180.02562 * 21 19 2 41 41 H 1.08004 * 119.99568 * 0.02562 * 23 22 19 42 42 H 1.08002 * 119.99658 * 180.27123 * 24 23 22 43 43 H 1.08000 * 119.99617 * 179.83191 * 25 24 23 44 44 H 1.08011 * 120.00098 * 179.97438 * 26 25 24 45 45 H 1.08005 * 120.00312 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 16 2.4122 0.1771 -2.5504 6 8 1.3247 1.0592 -2.7922 7 8 2.8777 -0.7636 -3.5084 8 7 3.7097 1.1299 -2.1620 9 6 5.0720 0.6261 -2.3537 10 6 3.4953 2.4743 -1.6209 11 6 3.5556 3.4818 -2.7401 12 1 3.7353 3.1533 -3.7532 13 6 3.3815 4.8226 -2.4708 14 7 3.1632 5.2226 -1.2371 15 14 3.4556 6.0713 -3.8582 16 1 3.7121 5.3703 -5.1419 17 1 2.1630 6.7977 -3.9399 18 1 4.5512 7.0387 -3.5955 19 6 2.0400 -0.7212 1.2493 20 1 1.6766 -1.7489 1.2493 21 6 3.5699 -0.7206 1.2497 22 6 1.5376 -0.0108 2.4797 23 6 1.8762 1.3111 2.7013 24 6 1.4117 1.9640 3.8278 25 6 0.6162 1.2925 4.7372 26 6 0.2820 -0.0307 4.5183 27 6 0.7428 -0.6825 3.3897 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 2.1109 -1.6562 -1.1948 32 1 5.4162 0.8817 -3.3558 33 1 5.7340 1.0790 -1.6156 34 1 5.0792 -0.4571 -2.2323 35 1 2.5174 2.5216 -1.1419 36 1 4.2702 2.6989 -0.8879 37 1 3.0411 6.1661 -1.0476 38 1 3.9337 -1.2342 0.3597 39 1 3.9329 0.3072 1.2499 40 1 3.9332 -1.2348 2.1395 41 1 2.5005 1.8347 1.9924 42 1 1.6727 2.9980 3.9986 43 1 0.2556 1.8019 5.6186 44 1 -0.3393 -0.5556 5.2291 45 1 0.4813 -1.7163 3.2184 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353530651.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:39 Heat of formation + Delta-G solvation = -62.123384 kcal Electronic energy + Delta-G solvation = -27145.683981 eV Core-core repulsion = 23482.485246 eV Total energy + Delta-G solvation = -3663.198735 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.70449 -37.09345 -36.47994 -35.48315 -35.11778 -32.84368 -32.43829 -30.85657 -29.36798 -29.09794 -27.78711 -25.07601 -24.00104 -22.79170 -22.31416 -22.10451 -20.04721 -19.00033 -17.40980 -16.69449 -16.57432 -16.30200 -16.12675 -15.24957 -14.99060 -14.72875 -14.32045 -13.96446 -13.74745 -13.43559 -13.31742 -13.25451 -13.20536 -12.84124 -12.44662 -12.16973 -12.12166 -12.03867 -11.72821 -11.60040 -11.47392 -11.35853 -11.25149 -11.14921 -11.12657 -10.99691 -10.73088 -10.68422 -10.59474 -10.29320 -10.01827 -9.74414 -9.36833 -8.86291 -8.59569 -8.44766 -8.06671 -6.07661 -4.10706 1.23054 1.41115 1.45776 3.30819 3.38720 3.44029 3.54385 3.83507 4.16317 4.44796 4.64069 4.71088 5.00257 5.04244 5.07199 5.13710 5.22333 5.25579 5.33558 5.44454 5.52336 5.54891 5.61237 5.66189 5.75257 5.87480 5.96603 6.04058 6.05765 6.08507 6.12020 6.26601 6.29240 6.42461 6.47711 6.50788 6.54781 6.60434 6.71227 7.04914 7.11531 7.25489 7.38881 7.60679 7.90470 8.19653 8.91685 9.54656 11.00902 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.011750 B = 0.004851 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.350064 B = 5770.208676 C = 7217.808878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.159 3.841 3 H 0.094 0.906 4 N -1.129 6.129 5 S 2.780 3.220 6 O -0.962 6.962 7 O -1.000 7.000 8 N -0.998 5.998 9 C 0.110 3.890 10 C 0.257 3.743 11 C -0.527 4.527 12 H 0.060 0.940 13 C 0.063 3.937 14 N -0.895 5.895 15 Si 0.895 3.105 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.284 1.284 19 C -0.055 4.055 20 H 0.080 0.920 21 C -0.144 4.144 22 C -0.069 4.069 23 C -0.109 4.109 24 C -0.114 4.114 25 C -0.128 4.128 26 C -0.124 4.124 27 C -0.118 4.118 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.407 0.593 32 H 0.049 0.951 33 H 0.066 0.934 34 H 0.051 0.949 35 H 0.037 0.963 36 H 0.034 0.966 37 H 0.263 0.737 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.054 0.946 41 H 0.129 0.871 42 H 0.123 0.877 43 H 0.117 0.883 44 H 0.117 0.883 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.976 -12.647 11.596 17.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.052 3.948 3 H 0.112 0.888 4 N -0.887 5.887 5 S 2.788 3.212 6 O -0.945 6.945 7 O -0.985 6.985 8 N -0.841 5.841 9 C -0.037 4.037 10 C 0.135 3.865 11 C -0.566 4.566 12 H 0.078 0.922 13 C -0.139 4.139 14 N -0.535 5.535 15 Si 0.723 3.277 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.210 1.210 19 C -0.075 4.075 20 H 0.099 0.901 21 C -0.202 4.202 22 C -0.070 4.070 23 C -0.127 4.127 24 C -0.132 4.132 25 C -0.146 4.146 26 C -0.142 4.142 27 C -0.137 4.137 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.239 0.761 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.147 0.853 42 H 0.141 0.859 43 H 0.135 0.865 44 H 0.135 0.865 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.460 -12.306 10.842 16.585 hybrid contribution 0.235 0.458 -0.255 0.575 sum -2.224 -11.848 10.588 16.044 Atomic orbital electron populations 1.22299 0.95129 1.02011 1.03340 1.20808 0.94389 0.96354 0.83287 0.88826 1.56339 1.82420 1.19006 1.30893 1.02013 0.73778 0.72555 0.72881 1.93627 1.52499 1.65013 1.83366 1.93541 1.82249 1.64105 1.58560 1.57642 1.17990 1.27495 1.80927 1.21189 0.83829 0.96918 1.01748 1.19103 0.97262 0.75708 0.94441 1.21518 1.49047 0.91453 0.94606 0.92154 1.24903 0.94882 0.98374 0.95757 1.69908 1.49097 1.16008 1.18454 0.86480 0.77656 0.81117 0.82431 1.19661 1.20808 1.20998 1.20450 0.96596 0.99053 0.91440 0.90121 1.21844 0.93658 1.03010 1.01648 1.19724 0.97370 0.94318 0.95594 1.21206 0.99683 0.94174 0.97624 1.21205 0.97530 1.00034 0.94391 1.21125 0.99051 0.94879 0.99516 1.21067 1.00394 0.95038 0.97661 1.20999 0.98372 0.99677 0.94603 0.92665 0.91592 0.90913 0.76087 0.93213 0.91505 0.93024 0.94523 0.94780 0.92779 0.92005 0.91709 0.92682 0.85326 0.85900 0.86466 0.86495 0.86429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 9.27 37.16 0.34 -2.01 16 2 C 0.16 2.24 2.20 -67.93 -0.15 2.09 16 3 H 0.09 1.55 5.46 -51.93 -0.28 1.27 16 4 N -1.13 -16.23 4.76 -4.89 -0.02 -16.25 16 5 S 2.78 54.35 5.96 -107.50 -0.64 53.71 16 6 O -0.96 -22.74 16.37 -57.17 -0.94 -23.67 16 7 O -1.00 -20.83 17.21 -57.17 -0.98 -21.82 16 8 N -1.00 -20.07 3.23 -123.05 -0.40 -20.47 16 9 C 0.11 1.84 10.33 59.85 0.62 2.46 16 10 C 0.26 6.17 4.82 -5.19 -0.03 6.15 16 11 C -0.53 -14.59 9.38 -34.44 -0.32 -14.91 16 12 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 13 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 14 N -0.90 -25.44 13.29 55.43 0.74 -24.71 16 15 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 16 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 19 C -0.06 -0.63 2.27 -91.77 -0.21 -0.84 16 20 H 0.08 0.78 7.88 -51.93 -0.41 0.37 16 21 C -0.14 -1.61 8.84 37.16 0.33 -1.28 16 22 C -0.07 -0.82 3.52 -104.62 -0.37 -1.19 16 23 C -0.11 -1.43 8.71 -39.58 -0.34 -1.77 16 24 C -0.11 -1.37 10.05 -39.58 -0.40 -1.77 16 25 C -0.13 -1.36 10.05 -39.59 -0.40 -1.76 16 26 C -0.12 -1.26 10.05 -39.59 -0.40 -1.65 16 27 C -0.12 -1.26 9.67 -39.59 -0.38 -1.64 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.89 7.22 -51.93 -0.37 0.51 16 30 H 0.07 1.18 7.64 -51.93 -0.40 0.79 16 31 H 0.41 4.65 8.84 -34.47 -0.30 4.35 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 1.03 7.94 -51.93 -0.41 0.61 16 34 H 0.05 0.72 7.79 -51.93 -0.40 0.32 16 35 H 0.04 0.93 6.18 -51.93 -0.32 0.61 16 36 H 0.03 0.82 7.96 -51.93 -0.41 0.41 16 37 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 38 H 0.06 0.66 7.61 -51.93 -0.39 0.26 16 39 H 0.06 0.80 7.37 -51.93 -0.38 0.42 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.13 1.81 7.10 -52.48 -0.37 1.44 16 42 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 43 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 44 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 45 H 0.12 1.03 7.95 -52.48 -0.42 0.61 16 LS Contribution 377.94 15.07 5.70 5.70 Total: -1.00 -33.03 377.94 -10.34 -43.37 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -6.97 Total: 3.89 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: -1.80 Total: -16.46 kcal Atomic # 7 Polarization: -61.74 SS G_CDS: 0.32 Total: -61.43 kcal Atomic # 8 Polarization: -43.57 SS G_CDS: -1.92 Total: -45.49 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: 54.35 SS G_CDS: -0.64 Total: 53.71 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.03 -10.34 -43.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353530651.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.754 kcal (2) G-P(sol) polarization free energy of solvation -33.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds