Wall clock time and date at job start Tue Mar 31 2020 14:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47405 * 2 1 4 4 N 1.46499 * 109.47369 * 120.00524 * 2 1 3 5 5 S 1.65609 * 119.99695 * 267.12283 * 4 2 1 6 6 O 1.42091 * 106.40154 * 47.04089 * 5 4 2 7 7 O 1.42105 * 106.39806 * 179.97438 * 5 4 2 8 8 N 1.65596 * 107.21848 * 293.49820 * 5 4 2 9 9 C 1.46499 * 119.99893 * 84.37203 * 8 5 4 10 10 C 1.46506 * 120.00116 * 264.37276 * 8 5 4 11 11 C 1.50692 * 109.46943 * 98.63221 * 10 8 5 12 12 H 1.07999 * 120.00528 * 5.29955 * 11 10 8 13 13 C 1.37885 * 119.99473 * 185.30220 * 11 10 8 14 14 N 1.31507 * 119.99989 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99545 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47573 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46863 * 120.00216 * 15 13 11 18 18 H 1.48500 * 109.46837 * 239.99597 * 15 13 11 19 19 C 1.52998 * 109.47317 * 240.00445 * 2 1 3 20 20 H 1.09000 * 109.47043 * 300.00068 * 19 2 1 21 21 C 1.53001 * 109.47638 * 179.97438 * 19 2 1 22 22 C 1.50708 * 109.47267 * 59.99394 * 19 2 1 23 23 C 1.38237 * 119.99371 * 59.73063 * 22 19 2 24 24 C 1.38237 * 119.99908 * 179.79039 * 23 22 19 25 25 C 1.38233 * 119.99495 * 0.44035 * 24 23 22 26 26 C 1.38240 * 120.00661 * 359.81440 * 25 24 23 27 27 C 1.38232 * 120.00167 * 240.00448 * 22 19 2 28 28 H 1.08997 * 109.47007 * 174.78390 * 1 2 3 29 29 H 1.09007 * 109.46943 * 294.77469 * 1 2 3 30 30 H 1.08991 * 109.47204 * 54.78117 * 1 2 3 31 31 H 0.97004 * 120.00373 * 87.12960 * 4 2 1 32 32 H 1.09002 * 109.46930 * 89.99875 * 9 8 5 33 33 H 1.09003 * 109.47189 * 209.99973 * 9 8 5 34 34 H 1.08997 * 109.47215 * 329.99670 * 9 8 5 35 35 H 1.08999 * 109.46681 * 218.63033 * 10 8 5 36 36 H 1.08993 * 109.46942 * 338.62876 * 10 8 5 37 37 H 0.97000 * 119.99731 * 179.97438 * 14 13 11 38 38 H 1.09000 * 109.46582 * 299.99849 * 21 19 2 39 39 H 1.08996 * 109.46922 * 180.02562 * 21 19 2 40 40 H 1.09000 * 109.46830 * 59.99931 * 21 19 2 41 41 H 1.08003 * 120.00490 * 359.97438 * 23 22 19 42 42 H 1.08000 * 120.00382 * 180.27687 * 24 23 22 43 43 H 1.08001 * 119.99640 * 179.83592 * 25 24 23 44 44 H 1.07997 * 120.00380 * 179.97438 * 26 25 24 45 45 H 1.07993 * 120.00239 * 359.97438 * 27 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 16 2.3622 0.1714 2.5676 6 8 1.2600 1.0424 2.7810 7 8 2.8063 -0.7716 3.5335 8 7 3.6627 1.1379 2.2259 9 6 3.4603 2.4365 1.5787 10 6 5.0158 0.6944 2.5708 11 6 5.6808 0.1143 1.3493 12 1 5.1830 0.1569 0.3918 13 6 6.9250 -0.4708 1.4541 14 7 7.5313 -0.5222 2.6199 15 14 7.7491 -1.1905 -0.0600 16 1 6.8657 -1.0060 -1.2393 17 1 9.0410 -0.4977 -0.2967 18 1 7.9960 -2.6393 0.1525 19 6 2.0400 -0.7211 -1.2493 20 1 1.6767 -1.7488 -1.2493 21 6 3.5700 -0.7206 -1.2497 22 6 1.5376 -0.0107 -2.4798 23 6 1.8669 1.3144 -2.6956 24 6 1.4096 1.9649 -3.8264 25 6 0.6156 1.2928 -4.7367 26 6 0.2820 -0.0308 -4.5183 27 6 0.7428 -0.6825 -3.3897 28 1 -0.3633 -1.0234 -0.0934 29 1 -0.3633 0.4307 0.9331 30 1 -0.3633 0.5926 -0.8395 31 1 2.1404 -1.6530 1.1847 32 1 3.3211 3.2041 2.3400 33 1 4.3326 2.6802 0.9722 34 1 2.5765 2.3915 0.9424 35 1 5.5957 1.5439 2.9313 36 1 4.9614 -0.0655 3.3503 37 1 8.4063 -0.9342 2.6937 38 1 3.9329 0.3072 -1.2499 39 1 3.9332 -1.2340 -2.1399 40 1 3.9337 -1.2343 -0.3597 41 1 2.4838 1.8407 -1.9822 42 1 1.6706 2.9989 -3.9973 43 1 0.2562 1.8018 -5.6189 44 1 -0.3387 -0.5557 -5.2294 45 1 0.4823 -1.7165 -3.2190 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353530652.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:42 Heat of formation + Delta-G solvation = -62.323397 kcal Electronic energy + Delta-G solvation = -27400.958581 eV Core-core repulsion = 23737.751172 eV Total energy + Delta-G solvation = -3663.207408 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.75113 -37.12853 -36.48395 -35.46770 -35.19078 -32.79803 -32.47785 -30.95367 -29.33909 -29.08355 -27.77933 -25.15764 -23.91042 -22.85190 -22.26532 -22.17642 -20.02784 -18.94893 -17.37370 -16.73902 -16.61715 -16.40994 -16.16905 -15.28646 -15.03804 -14.70097 -14.37580 -13.89557 -13.71926 -13.45983 -13.41626 -13.35239 -13.14369 -12.84922 -12.49187 -12.22976 -12.18674 -11.94526 -11.72786 -11.56771 -11.44805 -11.40613 -11.30555 -11.14805 -11.13046 -11.01488 -10.80672 -10.65033 -10.52002 -10.32439 -10.07147 -9.60107 -9.27121 -8.95880 -8.63641 -8.49568 -8.03070 -6.10385 -4.16225 1.26703 1.36051 1.37458 3.23228 3.32094 3.33221 3.50777 3.75636 4.18249 4.36161 4.62438 4.73414 4.94106 4.94859 5.02239 5.10446 5.14663 5.23452 5.24868 5.42337 5.46998 5.53415 5.63018 5.69561 5.80053 5.90883 5.99973 6.02085 6.03884 6.15235 6.19337 6.25390 6.36626 6.39200 6.46552 6.50546 6.55646 6.64023 6.76720 6.96837 7.22162 7.40523 7.48129 7.67351 7.87778 8.17438 8.89917 9.49693 10.98018 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.011228 B = 0.005433 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.268979 B = 5152.212057 C = 6687.628661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.164 3.836 3 H 0.082 0.918 4 N -1.120 6.120 5 S 2.786 3.214 6 O -0.999 6.999 7 O -0.979 6.979 8 N -0.995 5.995 9 C 0.103 3.897 10 C 0.243 3.757 11 C -0.541 4.541 12 H 0.074 0.926 13 C 0.064 3.936 14 N -0.890 5.890 15 Si 0.887 3.113 16 H -0.269 1.269 17 H -0.285 1.285 18 H -0.284 1.284 19 C -0.058 4.058 20 H 0.081 0.919 21 C -0.148 4.148 22 C -0.063 4.063 23 C -0.114 4.114 24 C -0.117 4.117 25 C -0.130 4.130 26 C -0.121 4.121 27 C -0.117 4.117 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.413 0.587 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.049 0.951 35 H 0.033 0.967 36 H 0.056 0.944 37 H 0.263 0.737 38 H 0.062 0.938 39 H 0.049 0.951 40 H 0.082 0.918 41 H 0.124 0.876 42 H 0.120 0.880 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.996 2.271 -12.390 18.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.057 3.943 3 H 0.100 0.900 4 N -0.878 5.878 5 S 2.794 3.206 6 O -0.983 6.983 7 O -0.963 6.963 8 N -0.838 5.838 9 C -0.043 4.043 10 C 0.121 3.879 11 C -0.581 4.581 12 H 0.092 0.908 13 C -0.139 4.139 14 N -0.528 5.528 15 Si 0.715 3.285 16 H -0.193 1.193 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.078 4.078 20 H 0.100 0.900 21 C -0.205 4.205 22 C -0.064 4.064 23 C -0.132 4.132 24 C -0.135 4.135 25 C -0.148 4.148 26 C -0.139 4.139 27 C -0.135 4.135 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.246 0.754 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.068 0.932 35 H 0.051 0.949 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.101 0.899 41 H 0.142 0.858 42 H 0.138 0.862 43 H 0.135 0.865 44 H 0.136 0.864 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.307 2.380 -11.433 17.705 hybrid contribution 0.975 -0.819 -1.334 1.844 sum -12.333 1.562 -12.767 17.820 Atomic orbital electron populations 1.22349 0.95411 1.02269 1.02914 1.20709 0.93733 0.95751 0.84130 0.90005 1.56107 1.82473 1.19979 1.29262 1.01729 0.72785 0.73038 0.73068 1.93542 1.52767 1.66972 1.84998 1.93596 1.82045 1.62623 1.58022 1.57616 1.23092 1.28009 1.75073 1.21306 1.01061 0.85110 0.96864 1.19240 0.75618 0.96147 0.96901 1.21780 1.02601 1.38080 0.95598 0.90768 1.24957 0.97259 0.95864 0.95807 1.69947 1.15310 1.44242 1.23299 0.86613 0.79596 0.78958 0.83319 1.19314 1.21111 1.20993 1.20518 0.97451 0.99008 0.90810 0.90017 1.22022 0.92256 1.03295 1.02887 1.19823 0.96558 0.94145 0.95826 1.21103 0.99915 0.94435 0.97773 1.21138 0.97948 0.99892 0.94521 1.21100 0.99257 0.94955 0.99491 1.21093 1.00253 0.94973 0.97559 1.21051 0.98137 0.99823 0.94537 0.92405 0.91137 0.91832 0.75360 0.93619 0.90676 0.93240 0.94922 0.92650 0.92721 0.91857 0.93184 0.89902 0.85808 0.86186 0.86500 0.86431 0.86270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.12 9.17 37.16 0.34 -1.77 16 2 C 0.16 2.22 2.16 -67.93 -0.15 2.07 16 3 H 0.08 1.12 4.85 -51.93 -0.25 0.87 16 4 N -1.12 -17.37 4.78 -4.90 -0.02 -17.40 16 5 S 2.79 54.06 6.02 -107.50 -0.65 53.41 16 6 O -1.00 -20.07 16.37 -57.17 -0.94 -21.01 16 7 O -0.98 -22.65 16.56 -57.17 -0.95 -23.60 16 8 N -1.00 -19.86 3.24 -123.06 -0.40 -20.26 16 9 C 0.10 1.69 10.13 59.85 0.61 2.30 16 10 C 0.24 5.89 5.43 -5.19 -0.03 5.87 16 11 C -0.54 -13.52 9.29 -34.44 -0.32 -13.84 16 12 H 0.07 1.71 4.96 -52.49 -0.26 1.45 16 13 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -25.20 13.29 55.43 0.74 -24.47 16 15 Si 0.89 20.23 29.54 -169.99 -5.02 15.21 16 16 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 C -0.06 -0.72 2.25 -91.77 -0.21 -0.93 16 20 H 0.08 0.92 7.88 -51.93 -0.41 0.51 16 21 C -0.15 -2.19 7.83 37.16 0.29 -1.90 16 22 C -0.06 -0.73 3.61 -104.62 -0.38 -1.11 16 23 C -0.11 -1.32 8.71 -39.58 -0.34 -1.67 16 24 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 25 C -0.13 -1.25 10.05 -39.58 -0.40 -1.65 16 26 C -0.12 -1.17 10.05 -39.58 -0.40 -1.56 16 27 C -0.12 -1.24 9.67 -39.58 -0.38 -1.62 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.98 7.36 -51.93 -0.38 0.60 16 30 H 0.06 0.73 7.41 -51.93 -0.38 0.34 16 31 H 0.41 5.81 8.81 -34.48 -0.30 5.51 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 1.20 8.07 -51.93 -0.42 0.79 16 34 H 0.05 0.70 5.75 -51.93 -0.30 0.40 16 35 H 0.03 0.83 8.13 -51.93 -0.42 0.40 16 36 H 0.06 1.51 6.80 -51.93 -0.35 1.15 16 37 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 38 H 0.06 0.98 6.74 -51.93 -0.35 0.63 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.08 1.40 6.71 -51.93 -0.35 1.05 16 41 H 0.12 1.40 7.10 -52.48 -0.37 1.03 16 42 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 43 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 44 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 45 H 0.12 1.08 7.95 -52.49 -0.42 0.66 16 LS Contribution 370.38 15.07 5.58 5.58 Total: -1.00 -31.49 370.38 -10.16 -41.65 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -6.64 Total: 6.70 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: -1.86 Total: -15.81 kcal Atomic # 7 Polarization: -62.44 SS G_CDS: 0.31 Total: -62.13 kcal Atomic # 8 Polarization: -42.72 SS G_CDS: -1.88 Total: -44.61 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 16 Polarization: 54.06 SS G_CDS: -0.65 Total: 53.41 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.49 -10.16 -41.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353530652.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.677 kcal (2) G-P(sol) polarization free energy of solvation -31.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds