Wall clock time and date at job start Tue Mar 31 2020 14:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08992 * 109.47818 * 2 1 4 4 C 1.50704 * 109.47266 * 239.99619 * 2 1 3 5 5 C 1.38232 * 119.99561 * 316.69710 * 4 2 1 6 6 C 1.38239 * 119.99865 * 179.78728 * 5 4 2 7 7 C 1.38235 * 119.99645 * 0.43864 * 6 5 4 8 8 C 1.38240 * 120.00193 * 359.81046 * 7 6 5 9 9 C 1.38224 * 120.00005 * 136.96581 * 4 2 1 10 10 C 1.53003 * 109.46831 * 120.00007 * 2 1 3 11 11 H 1.09004 * 109.47013 * 175.52251 * 10 2 1 12 12 C 1.53001 * 109.47256 * 55.52701 * 10 2 1 13 13 N 1.46498 * 109.47135 * 295.52037 * 10 2 1 14 14 S 1.65597 * 120.00123 * 214.99960 * 13 10 2 15 15 O 1.42106 * 106.40127 * 178.54249 * 14 13 10 16 16 O 1.42097 * 106.40669 * 311.46225 * 14 13 10 17 17 N 1.65605 * 107.21738 * 65.00493 * 14 13 10 18 18 C 1.46493 * 119.99994 * 89.99825 * 17 14 13 19 19 C 1.46501 * 119.99825 * 270.00089 * 17 14 13 20 20 C 1.50698 * 109.47438 * 94.99867 * 19 17 14 21 21 H 1.07999 * 119.99523 * 359.97438 * 20 19 17 22 22 C 1.37874 * 120.00203 * 180.02562 * 20 19 17 23 23 N 1.31509 * 119.99906 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99930 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.46948 * 89.99931 * 24 22 20 26 26 H 1.48500 * 109.47190 * 210.00263 * 24 22 20 27 27 H 1.48500 * 109.47287 * 330.00475 * 24 22 20 28 28 H 1.09000 * 109.47786 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.47095 * 300.00284 * 1 2 3 30 30 H 1.09001 * 109.47126 * 60.00162 * 1 2 3 31 31 H 1.08004 * 120.00754 * 359.97438 * 5 4 2 32 32 H 1.08001 * 120.00144 * 180.27261 * 6 5 4 33 33 H 1.07998 * 120.00089 * 179.83833 * 7 6 5 34 34 H 1.07997 * 120.00152 * 180.02562 * 8 7 6 35 35 H 1.07996 * 120.00457 * 359.97438 * 9 4 2 36 36 H 1.09002 * 109.46864 * 306.39398 * 12 10 2 37 37 H 1.08989 * 109.47179 * 66.39995 * 12 10 2 38 38 H 1.08999 * 109.46743 * 186.40193 * 12 10 2 39 39 H 0.96997 * 119.99700 * 35.00895 * 13 10 2 40 40 H 1.09006 * 109.47437 * 90.00215 * 18 17 14 41 41 H 1.08999 * 109.47183 * 210.00246 * 18 17 14 42 42 H 1.08996 * 109.47467 * 330.00052 * 18 17 14 43 43 H 1.09002 * 109.46992 * 214.99910 * 19 17 14 44 44 H 1.09003 * 109.47158 * 334.99445 * 19 17 14 45 45 H 0.97010 * 119.99680 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0323 -0.7105 -1.2304 5 6 1.4413 -1.8926 -1.6356 6 6 1.8992 -2.5421 -2.7667 7 6 2.9540 -2.0141 -3.4875 8 6 3.5484 -0.8347 -3.0793 9 6 3.0876 -0.1830 -1.9506 10 6 2.0399 -0.7213 1.2493 11 1 3.1270 -0.7913 1.2101 12 6 1.4401 -2.1276 1.3068 13 7 1.6416 0.0288 2.4430 14 16 2.6445 0.0833 3.7596 15 8 1.9984 0.9047 4.7225 16 8 3.0381 -1.2570 4.0201 17 7 4.0145 0.8918 3.2990 18 6 4.0927 2.3466 3.4519 19 6 5.1481 0.1521 2.7388 20 6 5.0652 0.1697 1.2342 21 1 4.2494 0.6804 0.7443 22 6 6.0302 -0.4671 0.4830 23 7 5.9576 -0.4522 -0.8299 24 14 7.4409 -1.3511 1.3304 25 1 7.0592 -2.7637 1.5834 26 1 8.6438 -1.3115 0.4605 27 1 7.7411 -0.6808 2.6211 28 1 -0.3635 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.6198 -2.3073 -1.0702 32 1 1.4346 -3.4634 -3.0858 33 1 3.3135 -2.5229 -4.3697 34 1 4.3722 -0.4220 -3.6427 35 1 3.5520 0.7384 -1.6319 36 1 0.3546 -2.0630 1.2314 37 1 1.8271 -2.7218 0.4791 38 1 1.7112 -2.5999 2.2511 39 1 0.7903 0.4934 2.4622 40 1 4.5003 2.5875 4.4338 41 1 4.7406 2.7589 2.6784 42 1 3.0954 2.7761 3.3572 43 1 6.0800 0.6198 3.0568 44 1 5.1198 -0.8786 3.0922 45 1 6.6368 -0.8999 -1.3584 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353530653.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:45 Heat of formation + Delta-G solvation = -51.624151 kcal Electronic energy + Delta-G solvation = -28067.273773 eV Core-core repulsion = 24404.530319 eV Total energy + Delta-G solvation = -3662.743454 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.24876 -36.86473 -36.44608 -35.61925 -35.23791 -32.50924 -32.42471 -30.29180 -28.79504 -28.50867 -28.29828 -25.17675 -24.68749 -21.93487 -21.79118 -21.53110 -19.21890 -18.83298 -17.57618 -16.78419 -16.69833 -16.12136 -15.71789 -15.01410 -14.74487 -14.53730 -14.25766 -13.76055 -13.67920 -13.32942 -13.15722 -13.01805 -12.64453 -12.47862 -12.41314 -12.00359 -11.82294 -11.76888 -11.74287 -11.53194 -11.42030 -11.36243 -11.22893 -11.21844 -10.78290 -10.67480 -10.50785 -10.33605 -10.23350 -10.10819 -10.04332 -9.54628 -8.99574 -8.65309 -8.13935 -8.10741 -7.98593 -6.18522 -4.18536 1.28004 2.02346 2.15559 3.24498 3.31388 3.36673 3.53177 4.15655 4.32837 4.48607 5.01313 5.11478 5.18744 5.24126 5.43578 5.49753 5.54685 5.64059 5.69807 5.76921 5.81721 5.93441 6.00619 6.05957 6.12674 6.17674 6.25067 6.29967 6.33973 6.38436 6.44954 6.50132 6.67547 6.75244 6.82086 6.85185 6.96847 7.08859 7.10712 7.26707 7.30594 7.40723 7.49160 7.60690 7.72474 8.35639 8.79798 9.41276 10.89167 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.010683 B = 0.007231 C = 0.005014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2620.314383 B = 3871.360612 C = 5582.595575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.047 4.047 3 H 0.081 0.919 4 C -0.078 4.078 5 C -0.121 4.121 6 C -0.139 4.139 7 C -0.132 4.132 8 C -0.098 4.098 9 C -0.051 4.051 10 C 0.137 3.863 11 H 0.141 0.859 12 C -0.175 4.175 13 N -1.122 6.122 14 S 2.788 3.212 15 O -1.004 7.004 16 O -0.981 6.981 17 N -0.993 5.993 18 C 0.107 3.893 19 C 0.210 3.790 20 C -0.552 4.552 21 H 0.089 0.911 22 C 0.087 3.913 23 N -0.870 5.870 24 Si 0.863 3.137 25 H -0.274 1.274 26 H -0.286 1.286 27 H -0.266 1.266 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.115 0.885 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.114 0.886 35 H 0.126 0.874 36 H 0.052 0.948 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.403 0.597 40 H 0.043 0.957 41 H 0.075 0.925 42 H 0.055 0.945 43 H 0.035 0.965 44 H 0.042 0.958 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.104 1.231 -1.978 8.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.067 4.067 3 H 0.099 0.901 4 C -0.079 4.079 5 C -0.139 4.139 6 C -0.157 4.157 7 C -0.151 4.151 8 C -0.116 4.116 9 C -0.069 4.069 10 C 0.032 3.968 11 H 0.158 0.842 12 C -0.234 4.234 13 N -0.880 5.880 14 S 2.796 3.204 15 O -0.988 6.988 16 O -0.965 6.965 17 N -0.834 5.834 18 C -0.039 4.039 19 C 0.086 3.914 20 C -0.591 4.591 21 H 0.107 0.893 22 C -0.119 4.119 23 N -0.506 5.506 24 Si 0.690 3.310 25 H -0.199 1.199 26 H -0.212 1.212 27 H -0.191 1.191 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.132 0.868 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.132 0.868 35 H 0.144 0.856 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.235 0.765 40 H 0.062 0.938 41 H 0.094 0.906 42 H 0.074 0.926 43 H 0.053 0.947 44 H 0.060 0.940 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.980 0.706 -1.272 8.111 hybrid contribution 0.699 -0.223 -0.112 0.742 sum -7.281 0.483 -1.384 7.427 Atomic orbital electron populations 1.21969 0.95559 1.01963 1.01049 1.20242 0.94820 0.99513 0.92123 0.90057 1.19601 0.96792 0.95540 0.95923 1.20942 1.00606 0.95582 0.96812 1.20886 0.98410 0.99852 0.96576 1.21006 0.97190 0.96856 1.00007 1.20958 0.98313 0.95119 0.97202 1.20998 0.92743 1.00281 0.92875 1.21366 1.03993 0.89316 0.82172 0.84205 1.22511 1.00376 0.97475 1.02998 1.56058 1.33095 1.66057 1.32796 1.01661 0.72504 0.73399 0.72873 1.93544 1.75957 1.70231 1.59045 1.93564 1.82625 1.36221 1.84061 1.57401 1.31288 1.15576 1.79176 1.21220 1.01614 0.80007 1.01081 1.19650 0.84724 0.91933 0.95091 1.21420 1.12367 1.36275 0.89007 0.89278 1.24749 0.97129 0.95249 0.94749 1.69841 1.34454 1.42316 1.04024 0.87060 0.82675 0.81180 0.80111 1.19921 1.21238 1.19089 0.92022 0.92939 0.92813 0.86759 0.87424 0.87491 0.86832 0.85583 0.92951 0.91130 0.91864 0.76453 0.93819 0.90599 0.92609 0.94717 0.94033 0.92602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 8.19 37.15 0.30 -1.56 16 2 C -0.05 -0.74 2.62 -91.77 -0.24 -0.98 16 3 H 0.08 1.32 7.97 -51.93 -0.41 0.91 16 4 C -0.08 -1.32 4.71 -104.63 -0.49 -1.81 16 5 C -0.12 -1.90 7.14 -39.58 -0.28 -2.18 16 6 C -0.14 -2.12 10.05 -39.58 -0.40 -2.52 16 7 C -0.13 -2.11 10.05 -39.58 -0.40 -2.51 16 8 C -0.10 -1.72 10.05 -39.58 -0.40 -2.12 16 9 C -0.05 -0.94 8.87 -39.59 -0.35 -1.29 16 10 C 0.14 2.40 2.28 -67.93 -0.15 2.25 16 11 H 0.14 2.96 4.25 -51.93 -0.22 2.74 16 12 C -0.17 -2.88 8.04 37.16 0.30 -2.58 16 13 N -1.12 -18.34 5.50 -4.89 -0.03 -18.37 16 14 S 2.79 53.66 6.01 -107.50 -0.65 53.02 16 15 O -1.00 -20.18 17.21 -57.17 -0.98 -21.17 16 16 O -0.98 -21.79 15.89 -57.17 -0.91 -22.70 16 17 N -0.99 -19.29 3.23 -123.06 -0.40 -19.69 16 18 C 0.11 1.75 10.31 59.84 0.62 2.36 16 19 C 0.21 4.64 4.35 -5.19 -0.02 4.62 16 20 C -0.55 -13.07 7.46 -34.44 -0.26 -13.32 16 21 H 0.09 2.16 7.19 -52.49 -0.38 1.79 16 22 C 0.09 2.15 5.47 -17.82 -0.10 2.05 16 23 N -0.87 -21.74 13.15 55.43 0.73 -21.01 16 24 Si 0.86 19.78 27.47 -169.99 -4.67 15.11 16 25 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 27 H -0.27 -5.96 6.54 56.52 0.37 -5.59 16 28 H 0.06 0.74 4.79 -51.93 -0.25 0.49 16 29 H 0.05 0.59 6.71 -51.92 -0.35 0.24 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.11 1.58 5.51 -52.48 -0.29 1.29 16 32 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 33 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 34 H 0.11 1.94 8.06 -52.49 -0.42 1.52 16 35 H 0.13 2.54 8.01 -52.49 -0.42 2.12 16 36 H 0.05 0.72 5.96 -51.93 -0.31 0.41 16 37 H 0.07 1.18 5.88 -51.94 -0.31 0.87 16 38 H 0.06 1.12 7.58 -51.93 -0.39 0.73 16 39 H 0.40 5.49 7.29 -34.47 -0.25 5.23 16 40 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 42 H 0.06 0.81 7.79 -51.93 -0.40 0.41 16 43 H 0.03 0.76 7.17 -51.93 -0.37 0.39 16 44 H 0.04 0.98 6.34 -51.93 -0.33 0.65 16 45 H 0.26 6.49 8.31 -40.82 -0.34 6.15 16 LS Contribution 358.09 15.07 5.40 5.40 Total: -1.00 -27.92 358.09 -9.76 -37.68 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -6.39 Total: 11.35 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: -1.87 Total: -19.61 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: 0.31 Total: -59.07 kcal Atomic # 8 Polarization: -41.97 SS G_CDS: -1.89 Total: -43.87 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -4.67 Total: 15.11 kcal Atomic # 16 Polarization: 53.66 SS G_CDS: -0.65 Total: 53.02 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -27.92 -9.76 -37.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353530653.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.945 kcal (2) G-P(sol) polarization free energy of solvation -27.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds