Wall clock time and date at job start Tue Mar 31 2020 14:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08992 * 109.47818 * 2 1 4 4 C 1.50704 * 109.47266 * 239.99619 * 2 1 3 5 5 C 1.38232 * 119.99561 * 316.69710 * 4 2 1 6 6 C 1.38239 * 119.99865 * 179.78728 * 5 4 2 7 7 C 1.38235 * 119.99645 * 0.43864 * 6 5 4 8 8 C 1.38240 * 120.00193 * 359.81046 * 7 6 5 9 9 C 1.38224 * 120.00005 * 136.96581 * 4 2 1 10 10 C 1.53003 * 109.46831 * 120.00007 * 2 1 3 11 11 H 1.09004 * 109.47013 * 175.52251 * 10 2 1 12 12 C 1.53001 * 109.47256 * 55.52701 * 10 2 1 13 13 N 1.46498 * 109.47135 * 295.52037 * 10 2 1 14 14 S 1.65597 * 120.00123 * 214.99960 * 13 10 2 15 15 O 1.42106 * 106.40127 * 178.54249 * 14 13 10 16 16 O 1.42097 * 106.40669 * 311.46225 * 14 13 10 17 17 N 1.65605 * 107.21738 * 65.00493 * 14 13 10 18 18 C 1.46493 * 119.99994 * 89.99825 * 17 14 13 19 19 C 1.46501 * 119.99825 * 270.00089 * 17 14 13 20 20 C 1.50698 * 109.47438 * 94.99867 * 19 17 14 21 21 H 1.07999 * 119.99523 * 359.97438 * 20 19 17 22 22 C 1.37874 * 120.00203 * 180.02562 * 20 19 17 23 23 N 1.31509 * 119.99906 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99930 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.46948 * 89.99931 * 24 22 20 26 26 H 1.48500 * 109.47190 * 210.00263 * 24 22 20 27 27 H 1.48500 * 109.47287 * 330.00475 * 24 22 20 28 28 H 1.09000 * 109.47786 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.47095 * 300.00284 * 1 2 3 30 30 H 1.09001 * 109.47126 * 60.00162 * 1 2 3 31 31 H 1.08004 * 120.00754 * 359.97438 * 5 4 2 32 32 H 1.08001 * 120.00144 * 180.27261 * 6 5 4 33 33 H 1.07998 * 120.00089 * 179.83833 * 7 6 5 34 34 H 1.07997 * 120.00152 * 180.02562 * 8 7 6 35 35 H 1.07996 * 120.00457 * 359.97438 * 9 4 2 36 36 H 1.09002 * 109.46864 * 306.39398 * 12 10 2 37 37 H 1.08989 * 109.47179 * 66.39995 * 12 10 2 38 38 H 1.08999 * 109.46743 * 186.40193 * 12 10 2 39 39 H 0.96997 * 119.99700 * 35.00895 * 13 10 2 40 40 H 1.09006 * 109.47437 * 90.00215 * 18 17 14 41 41 H 1.08999 * 109.47183 * 210.00246 * 18 17 14 42 42 H 1.08996 * 109.47467 * 330.00052 * 18 17 14 43 43 H 1.09002 * 109.46992 * 214.99910 * 19 17 14 44 44 H 1.09003 * 109.47158 * 334.99445 * 19 17 14 45 45 H 0.97010 * 119.99680 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0323 -0.7105 -1.2304 5 6 1.4413 -1.8926 -1.6356 6 6 1.8992 -2.5421 -2.7667 7 6 2.9540 -2.0141 -3.4875 8 6 3.5484 -0.8347 -3.0793 9 6 3.0876 -0.1830 -1.9506 10 6 2.0399 -0.7213 1.2493 11 1 3.1270 -0.7913 1.2101 12 6 1.4401 -2.1276 1.3068 13 7 1.6416 0.0288 2.4430 14 16 2.6445 0.0833 3.7596 15 8 1.9984 0.9047 4.7225 16 8 3.0381 -1.2570 4.0201 17 7 4.0145 0.8918 3.2990 18 6 4.0927 2.3466 3.4519 19 6 5.1481 0.1521 2.7388 20 6 5.0652 0.1697 1.2342 21 1 4.2494 0.6804 0.7443 22 6 6.0302 -0.4671 0.4830 23 7 5.9576 -0.4522 -0.8299 24 14 7.4409 -1.3511 1.3304 25 1 7.0592 -2.7637 1.5834 26 1 8.6438 -1.3115 0.4605 27 1 7.7411 -0.6808 2.6211 28 1 -0.3635 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.6198 -2.3073 -1.0702 32 1 1.4346 -3.4634 -3.0858 33 1 3.3135 -2.5229 -4.3697 34 1 4.3722 -0.4220 -3.6427 35 1 3.5520 0.7384 -1.6319 36 1 0.3546 -2.0630 1.2314 37 1 1.8271 -2.7218 0.4791 38 1 1.7112 -2.5999 2.2511 39 1 0.7903 0.4934 2.4622 40 1 4.5003 2.5875 4.4338 41 1 4.7406 2.7589 2.6784 42 1 3.0954 2.7761 3.3572 43 1 6.0800 0.6198 3.0568 44 1 5.1198 -0.8786 3.0922 45 1 6.6368 -0.8999 -1.3584 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353530653.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:44 Heat of formation + Delta-G solvation = -69.189690 kcal Electronic energy + Delta-G solvation = -28068.035472 eV Core-core repulsion = 24404.530319 eV Total energy + Delta-G solvation = -3663.505153 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.52812 -38.38400 -37.86951 -37.21423 -36.87177 -34.34258 -33.74972 -31.57773 -30.19271 -30.06948 -29.56641 -26.70793 -25.90680 -23.69419 -23.08247 -22.85116 -20.51454 -20.35633 -19.23798 -18.49884 -18.26585 -17.39139 -17.22720 -16.50668 -16.14331 -15.97465 -15.80548 -15.25664 -15.05978 -14.65671 -14.47623 -14.41540 -14.29235 -14.03703 -13.84445 -13.41295 -13.32980 -13.25453 -13.15162 -13.07948 -12.93537 -12.73793 -12.64800 -12.61299 -12.35755 -12.27973 -12.00497 -11.91441 -11.72048 -11.41319 -11.34887 -11.24605 -10.58003 -10.37777 -9.71221 -9.44015 -9.27326 -8.08520 -6.09463 -0.25792 0.73726 0.86078 1.38593 1.45615 1.49034 2.02250 2.43412 2.64524 3.17716 3.21144 3.47334 3.92077 4.02673 4.08818 4.18028 4.37785 4.40303 4.46989 4.56044 4.58994 4.64187 4.70452 4.79288 4.82788 4.87301 4.99951 5.02745 5.05020 5.06328 5.12986 5.21626 5.31179 5.39586 5.42093 5.45415 5.53315 5.59051 5.64271 5.79665 5.83163 5.95927 6.09795 6.31172 6.43216 6.45967 6.89035 7.49393 8.98262 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.010683 B = 0.007231 C = 0.005014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2620.314383 B = 3871.360612 C = 5582.595575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.041 4.041 3 H 0.067 0.933 4 C -0.087 4.087 5 C -0.123 4.123 6 C -0.138 4.138 7 C -0.137 4.137 8 C -0.115 4.115 9 C -0.072 4.072 10 C 0.138 3.862 11 H 0.103 0.897 12 C -0.172 4.172 13 N -1.107 6.107 14 S 2.800 3.200 15 O -1.010 7.010 16 O -1.012 7.012 17 N -0.998 5.998 18 C 0.099 3.901 19 C 0.216 3.784 20 C -0.539 4.539 21 H 0.078 0.922 22 C 0.050 3.950 23 N -0.885 5.885 24 Si 0.896 3.104 25 H -0.284 1.284 26 H -0.287 1.287 27 H -0.257 1.257 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.130 0.870 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.046 0.954 39 H 0.418 0.582 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.038 0.962 44 H 0.027 0.973 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.930 0.812 -1.814 10.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.061 4.061 3 H 0.086 0.914 4 C -0.087 4.087 5 C -0.140 4.140 6 C -0.156 4.156 7 C -0.155 4.155 8 C -0.133 4.133 9 C -0.090 4.090 10 C 0.032 3.968 11 H 0.121 0.879 12 C -0.231 4.231 13 N -0.869 5.869 14 S 2.808 3.192 15 O -0.994 6.994 16 O -0.996 6.996 17 N -0.839 5.839 18 C -0.047 4.047 19 C 0.091 3.909 20 C -0.578 4.578 21 H 0.096 0.904 22 C -0.154 4.154 23 N -0.522 5.522 24 Si 0.724 3.276 25 H -0.210 1.210 26 H -0.212 1.212 27 H -0.181 1.181 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.156 0.844 32 H 0.157 0.843 33 H 0.148 0.852 34 H 0.125 0.875 35 H 0.115 0.885 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.065 0.935 39 H 0.254 0.746 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.056 0.944 44 H 0.045 0.955 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.816 0.319 -1.088 9.881 hybrid contribution 1.230 -0.065 -0.185 1.245 sum -8.586 0.254 -1.273 8.683 Atomic orbital electron populations 1.21955 0.92675 1.03096 1.02341 1.20172 0.97093 0.98237 0.90639 0.91449 1.19760 0.96492 0.96307 0.96168 1.21228 1.00918 0.94827 0.97059 1.21294 0.97740 1.00622 0.95950 1.21285 0.97247 0.96127 1.00843 1.21023 0.98731 0.96237 0.97330 1.20858 0.94051 0.99967 0.94172 1.21191 1.02054 0.90488 0.83063 0.87930 1.22488 1.02356 0.96282 1.01952 1.55705 1.33430 1.66067 1.31710 1.01160 0.72420 0.72607 0.73040 1.93530 1.75975 1.70184 1.59695 1.93525 1.83196 1.38032 1.84800 1.57350 1.30697 1.16863 1.79006 1.21458 1.03005 0.78170 1.02052 1.19425 0.85847 0.91617 0.94029 1.21476 1.11470 1.35118 0.89767 0.90447 1.25208 0.98703 0.96214 0.95229 1.69946 1.34725 1.43056 1.04480 0.86515 0.81231 0.79966 0.79938 1.20994 1.21244 1.18091 0.90862 0.91340 0.91936 0.84398 0.84288 0.85246 0.87548 0.88509 0.89755 0.91434 0.93531 0.74569 0.92200 0.90585 0.90747 0.94378 0.95521 0.93039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 8.19 71.98 0.59 -2.60 16 2 C -0.04 -1.25 2.62 -11.54 -0.03 -1.28 16 3 H 0.07 2.20 7.97 -2.39 -0.02 2.19 16 4 C -0.09 -2.89 4.71 -19.87 -0.09 -2.99 16 5 C -0.12 -3.56 7.14 22.27 0.16 -3.40 16 6 C -0.14 -3.87 10.05 22.27 0.22 -3.65 16 7 C -0.14 -4.20 10.05 22.27 0.22 -3.98 16 8 C -0.12 -4.14 10.05 22.27 0.22 -3.92 16 9 C -0.07 -2.76 8.87 22.27 0.20 -2.57 16 10 C 0.14 4.72 2.28 44.99 0.10 4.82 16 11 H 0.10 4.39 4.25 -2.39 -0.01 4.38 16 12 C -0.17 -5.36 8.04 71.98 0.58 -4.78 16 13 N -1.11 -34.66 5.50 -169.38 -0.93 -35.59 16 14 S 2.80 105.26 6.01 -56.49 -0.34 104.92 16 15 O -1.01 -38.89 17.21 -128.00 -2.20 -41.09 16 16 O -1.01 -44.77 15.89 -128.00 -2.03 -46.80 16 17 N -1.00 -38.17 3.23 -543.24 -1.75 -39.93 16 18 C 0.10 3.07 10.31 127.77 1.32 4.39 16 19 C 0.22 9.55 4.35 85.63 0.37 9.92 16 20 C -0.54 -25.94 7.46 25.60 0.19 -25.75 16 21 H 0.08 3.87 7.19 -2.91 -0.02 3.85 16 22 C 0.05 2.50 5.47 84.65 0.46 2.97 16 23 N -0.89 -45.43 13.15 21.45 0.28 -45.14 16 24 Si 0.90 40.81 27.47 68.60 1.88 42.70 16 25 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 26 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 27 H -0.26 -11.19 6.54 99.48 0.65 -10.54 16 28 H 0.07 1.46 4.79 -2.39 -0.01 1.45 16 29 H 0.07 1.30 6.71 -2.38 -0.02 1.28 16 30 H 0.06 1.30 8.14 -2.39 -0.02 1.29 16 31 H 0.14 3.30 5.51 -2.91 -0.02 3.28 16 32 H 0.14 3.01 8.06 -2.91 -0.02 2.98 16 33 H 0.13 3.30 8.06 -2.91 -0.02 3.27 16 34 H 0.11 3.83 8.06 -2.91 -0.02 3.81 16 35 H 0.10 4.18 8.01 -2.91 -0.02 4.16 16 36 H 0.08 2.04 5.96 -2.39 -0.01 2.03 16 37 H 0.07 2.13 5.88 -2.39 -0.01 2.12 16 38 H 0.05 1.60 7.58 -2.39 -0.02 1.58 16 39 H 0.42 10.39 7.29 -96.75 -0.71 9.68 16 40 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 41 H 0.08 2.36 8.07 -2.39 -0.02 2.34 16 42 H 0.07 2.02 7.79 -2.39 -0.02 2.01 16 43 H 0.04 1.66 7.17 -2.39 -0.02 1.64 16 44 H 0.03 1.27 6.34 -2.39 -0.02 1.25 16 45 H 0.26 13.12 8.31 -92.70 -0.77 12.35 16 Total: -1.00 -60.21 358.09 -0.33 -60.54 By element: Atomic # 1 Polarization: 32.97 SS G_CDS: 0.25 Total: 33.21 kcal Atomic # 6 Polarization: -37.34 SS G_CDS: 4.52 Total: -32.82 kcal Atomic # 7 Polarization: -118.26 SS G_CDS: -2.40 Total: -120.66 kcal Atomic # 8 Polarization: -83.66 SS G_CDS: -4.24 Total: -87.90 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 1.88 Total: 42.70 kcal Atomic # 16 Polarization: 105.26 SS G_CDS: -0.34 Total: 104.92 kcal Total: -60.21 -0.33 -60.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353530653.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.647 kcal (2) G-P(sol) polarization free energy of solvation -60.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds