Wall clock time and date at job start Tue Mar 31 2020 15:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46964 * 2 1 4 4 C 1.52994 * 109.47247 * 239.99955 * 2 1 3 5 5 C 1.53004 * 109.47167 * 64.99957 * 4 2 1 6 6 N 1.46498 * 109.47193 * 179.97438 * 5 4 2 7 7 S 1.65599 * 119.99986 * 164.44587 * 6 5 4 8 8 O 1.42096 * 106.40266 * 176.31712 * 7 6 5 9 9 O 1.42106 * 106.40277 * 309.23613 * 7 6 5 10 10 N 1.65595 * 107.21942 * 62.77342 * 7 6 5 11 11 C 1.46501 * 120.00541 * 273.11504 * 10 7 6 12 12 C 1.46508 * 119.99852 * 93.11390 * 10 7 6 13 13 C 1.50692 * 109.47094 * 95.57242 * 12 10 7 14 14 H 1.07998 * 120.00178 * 4.71567 * 13 12 10 15 15 C 1.37884 * 120.00122 * 184.72026 * 13 12 10 16 16 N 1.31514 * 119.99719 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00242 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46751 * 59.99899 * 17 15 13 19 19 H 1.48506 * 109.47115 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47264 * 300.00152 * 17 15 13 21 21 C 1.50704 * 109.46679 * 120.00140 * 2 1 3 22 22 C 1.38230 * 120.00321 * 59.72875 * 21 2 1 23 23 C 1.38236 * 119.99934 * 179.80681 * 22 21 2 24 24 C 1.38230 * 120.00108 * 0.40035 * 23 22 21 25 25 C 1.38237 * 119.99798 * 359.84952 * 24 23 22 26 26 C 1.38228 * 120.00251 * 359.96357 * 25 24 23 27 27 H 1.09006 * 109.46965 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47382 * 299.99865 * 1 2 3 29 29 H 1.09004 * 109.46871 * 60.00364 * 1 2 3 30 30 H 1.09000 * 109.47100 * 185.00075 * 4 2 1 31 31 H 1.09000 * 109.47573 * 305.00062 * 4 2 1 32 32 H 1.09000 * 109.47207 * 300.00053 * 5 4 2 33 33 H 1.09000 * 109.46788 * 59.99625 * 5 4 2 34 34 H 0.97003 * 120.00260 * 344.44976 * 6 5 4 35 35 H 1.09000 * 109.46763 * 89.99540 * 11 10 7 36 36 H 1.08996 * 109.47262 * 209.99990 * 11 10 7 37 37 H 1.08999 * 109.46734 * 329.99624 * 11 10 7 38 38 H 1.08996 * 109.47081 * 215.57551 * 12 10 7 39 39 H 1.09004 * 109.46765 * 335.57182 * 12 10 7 40 40 H 0.97004 * 120.00095 * 180.02562 * 16 15 13 41 41 H 1.08002 * 119.99643 * 0.02562 * 22 21 2 42 42 H 1.07999 * 119.99687 * 180.23233 * 23 22 21 43 43 H 1.07997 * 120.00011 * 179.84021 * 24 23 22 44 44 H 1.07996 * 119.99803 * 179.97438 * 25 24 23 45 45 H 1.08000 * 120.00505 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6353 0.0689 -2.4953 6 7 2.1242 -0.6213 -3.6914 7 16 1.5213 -0.2235 -5.1816 8 8 2.2480 -0.9955 -6.1276 9 8 0.1056 -0.2668 -5.0663 10 7 1.9191 1.3589 -5.4648 11 6 1.0406 2.4312 -4.9909 12 6 3.1496 1.6865 -6.1893 13 6 2.8337 1.8926 -7.6483 14 1 1.8090 1.8652 -7.9880 15 6 3.8531 2.1160 -8.5495 16 7 5.1010 2.1497 -8.1357 17 14 3.4616 2.3708 -10.3581 18 1 2.5808 3.5564 -10.5116 19 1 4.7225 2.5907 -11.1113 20 1 2.7704 1.1686 -10.8892 21 6 2.0323 -0.7105 1.2305 22 6 1.6937 -2.0322 1.4521 23 6 2.1577 -2.6850 2.5788 24 6 2.9535 -2.0136 3.4881 25 6 3.2878 -0.6903 3.2691 26 6 2.8270 -0.0386 2.1405 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 3.1264 -0.7994 -1.2055 31 1 1.6055 -1.7198 -1.2952 32 1 0.5490 0.1472 -2.5390 33 1 2.0699 1.0675 -2.4493 34 1 2.8010 -1.3115 -3.6106 35 1 1.3381 2.7266 -3.9847 36 1 1.1200 3.2882 -5.6596 37 1 0.0100 2.0766 -4.9757 38 1 3.5811 2.5992 -5.7784 39 1 3.8621 0.8682 -6.0838 40 1 5.8181 2.3073 -8.7696 41 1 1.0695 -2.5559 0.7431 42 1 1.8962 -3.7188 2.7500 43 1 3.3139 -2.5229 4.3696 44 1 3.9092 -0.1657 3.9797 45 1 3.0879 0.9953 1.9696 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355953841.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:16 Heat of formation + Delta-G solvation = -90.019407 kcal Electronic energy + Delta-G solvation = -25508.939844 eV Core-core repulsion = 21844.531446 eV Total energy + Delta-G solvation = -3664.408398 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.41638 -38.31004 -37.67296 -37.18438 -36.82904 -35.08179 -34.49295 -31.73734 -30.81866 -29.65027 -28.79678 -26.77071 -25.31482 -24.19919 -23.66061 -22.86633 -20.94948 -20.20311 -18.93043 -18.42978 -18.15148 -17.85582 -17.26218 -16.69041 -16.30317 -16.13531 -15.76832 -15.57855 -15.08844 -14.92573 -14.61707 -14.48043 -14.13158 -14.06709 -13.97041 -13.79083 -13.39254 -13.31150 -13.13682 -13.05732 -13.00683 -12.91631 -12.82085 -12.50629 -12.45532 -12.32993 -12.11617 -11.97101 -11.90860 -11.76629 -11.49378 -11.35298 -10.59889 -10.42818 -9.77163 -9.75811 -9.53498 -8.20145 -6.32176 -0.29038 0.51524 0.56218 1.39247 1.42969 1.49965 2.07507 2.40728 2.67248 2.94374 3.10967 3.47333 3.69213 3.86239 4.05816 4.14698 4.20132 4.21280 4.25130 4.35545 4.46440 4.55203 4.62279 4.66953 4.73672 4.74403 4.80857 4.86311 5.04965 5.08368 5.11051 5.11773 5.21029 5.23599 5.25850 5.35158 5.42978 5.46643 5.65539 5.69139 5.71034 5.81644 5.88746 6.09991 6.18117 6.19280 6.76370 7.36722 8.87313 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.024121 B = 0.002514 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.528392 B =11133.259914 C =11453.665239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.047 4.047 3 H 0.090 0.910 4 C -0.111 4.111 5 C 0.110 3.890 6 N -1.121 6.121 7 S 2.799 3.201 8 O -1.014 7.014 9 O -1.010 7.010 10 N -1.003 6.003 11 C 0.086 3.914 12 C 0.271 3.729 13 C -0.552 4.552 14 H 0.053 0.947 15 C 0.011 3.989 16 N -0.924 5.924 17 Si 0.956 3.044 18 H -0.262 1.262 19 H -0.277 1.277 20 H -0.278 1.278 21 C -0.082 4.082 22 C -0.127 4.127 23 C -0.130 4.130 24 C -0.136 4.136 25 C -0.129 4.129 26 C -0.130 4.130 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.421 0.579 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.028 0.972 39 H 0.018 0.982 40 H 0.267 0.733 41 H 0.126 0.874 42 H 0.134 0.866 43 H 0.136 0.864 44 H 0.136 0.864 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.128 -4.282 24.596 25.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.066 4.066 3 H 0.109 0.891 4 C -0.150 4.150 5 C -0.016 4.016 6 N -0.884 5.884 7 S 2.807 3.193 8 O -0.998 6.998 9 O -0.993 6.993 10 N -0.844 5.844 11 C -0.060 4.060 12 C 0.148 3.852 13 C -0.591 4.591 14 H 0.071 0.929 15 C -0.189 4.189 16 N -0.564 5.564 17 Si 0.781 3.219 18 H -0.187 1.187 19 H -0.202 1.202 20 H -0.203 1.203 21 C -0.082 4.082 22 C -0.145 4.145 23 C -0.148 4.148 24 C -0.154 4.154 25 C -0.147 4.147 26 C -0.148 4.148 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.256 0.744 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.046 0.954 39 H 0.036 0.964 40 H 0.076 0.924 41 H 0.144 0.856 42 H 0.152 0.848 43 H 0.154 0.846 44 H 0.154 0.846 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.597 -4.654 23.935 25.260 hybrid contribution 0.673 -0.022 -0.879 1.108 sum -5.923 -4.676 23.056 24.260 Atomic orbital electron populations 1.21950 0.93704 1.02532 1.02470 1.20105 0.96450 0.99502 0.90561 0.89133 1.21789 1.01897 0.99536 0.91751 1.21584 0.99838 0.96268 0.83862 1.55793 1.57585 1.52127 1.22905 1.01161 0.72725 0.72656 0.72779 1.93569 1.74315 1.70694 1.61248 1.93499 1.31455 1.86950 1.87389 1.57458 1.34045 1.23496 1.69447 1.21630 0.93138 0.91115 1.00078 1.18611 0.80693 0.96033 0.89900 1.21834 0.93396 1.49354 0.94530 0.92851 1.25770 0.94788 0.94841 1.03472 1.70003 0.99669 1.50107 1.36613 0.85638 0.77895 0.78906 0.79465 1.18682 1.20156 1.20341 1.19971 0.97592 0.94485 0.96202 1.21214 1.00531 0.94625 0.98127 1.21419 0.98047 1.00699 0.94607 1.21436 0.98735 0.95127 1.00078 1.21428 1.00093 0.95287 0.97848 1.21343 0.98106 1.00671 0.94663 0.92339 0.92029 0.91579 0.90926 0.90668 0.90095 0.90761 0.74415 0.90596 0.91184 0.90629 0.95385 0.96376 0.92368 0.85561 0.84789 0.84607 0.84589 0.85034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 8.76 71.98 0.63 -1.50 16 2 C -0.05 -0.70 2.56 -11.54 -0.03 -0.73 16 3 H 0.09 1.21 7.88 -2.39 -0.02 1.19 16 4 C -0.11 -1.89 4.57 30.59 0.14 -1.76 16 5 C 0.11 2.35 6.01 86.38 0.52 2.87 16 6 N -1.12 -31.33 6.05 -187.49 -1.13 -32.47 16 7 S 2.80 109.77 6.09 -56.49 -0.34 109.43 16 8 O -1.01 -49.82 16.99 -128.00 -2.17 -52.00 16 9 O -1.01 -41.00 16.34 -128.00 -2.09 -43.09 16 10 N -1.00 -40.87 3.23 -543.22 -1.75 -42.63 16 11 C 0.09 2.74 10.69 127.77 1.37 4.11 16 12 C 0.27 13.79 5.10 85.63 0.44 14.23 16 13 C -0.55 -31.45 9.38 25.60 0.24 -31.21 16 14 H 0.05 3.03 7.81 -2.91 -0.02 3.00 16 15 C 0.01 0.62 5.46 84.66 0.46 1.08 16 16 N -0.92 -54.74 13.29 21.45 0.28 -54.45 16 17 Si 0.96 44.91 29.54 68.60 2.03 46.94 16 18 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 19 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 20 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 21 C -0.08 -1.33 4.78 -19.86 -0.09 -1.43 16 22 C -0.13 -2.03 8.76 22.27 0.20 -1.83 16 23 C -0.13 -1.91 10.05 22.27 0.22 -1.69 16 24 C -0.14 -1.90 10.05 22.27 0.22 -1.68 16 25 C -0.13 -1.84 10.05 22.27 0.22 -1.62 16 26 C -0.13 -2.01 9.67 22.27 0.22 -1.80 16 27 H 0.06 0.83 7.38 -2.38 -0.02 0.81 16 28 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.07 0.94 6.56 -2.38 -0.02 0.92 16 30 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.07 1.25 7.58 -2.39 -0.02 1.24 16 32 H 0.08 1.70 6.22 -2.39 -0.01 1.69 16 33 H 0.07 1.45 8.05 -2.39 -0.02 1.43 16 34 H 0.42 10.48 8.66 -96.74 -0.84 9.64 16 35 H 0.08 1.84 8.05 -2.39 -0.02 1.82 16 36 H 0.07 2.34 8.07 -2.39 -0.02 2.32 16 37 H 0.08 2.26 7.05 -2.39 -0.02 2.24 16 38 H 0.03 1.43 8.11 -2.39 -0.02 1.41 16 39 H 0.02 1.01 7.50 -2.38 -0.02 0.99 16 40 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 41 H 0.13 1.79 7.16 -2.91 -0.02 1.77 16 42 H 0.13 1.47 8.06 -2.91 -0.02 1.45 16 43 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 44 H 0.14 1.40 8.06 -2.91 -0.02 1.37 16 45 H 0.13 1.66 7.95 -2.91 -0.02 1.64 16 Total: -1.00 -73.59 381.53 -0.29 -73.88 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: 0.14 Total: 17.33 kcal Atomic # 6 Polarization: -27.69 SS G_CDS: 4.75 Total: -22.94 kcal Atomic # 7 Polarization: -126.94 SS G_CDS: -2.60 Total: -129.54 kcal Atomic # 8 Polarization: -90.82 SS G_CDS: -4.27 Total: -95.09 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Atomic # 16 Polarization: 109.77 SS G_CDS: -0.34 Total: 109.43 kcal Total: -73.59 -0.29 -73.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355953841.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.139 kcal (2) G-P(sol) polarization free energy of solvation -73.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds