Wall clock time and date at job start Tue Mar 31 2020 14:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47567 * 2 1 4 4 N 1.46906 * 109.46776 * 120.00043 * 2 1 3 5 5 C 1.46902 * 110.99573 * 274.99857 * 4 2 1 6 6 C 1.53008 * 109.46622 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.46924 * 299.99642 * 6 5 4 8 8 C 1.52998 * 109.47259 * 60.00101 * 6 5 4 9 9 C 1.50698 * 109.46668 * 180.02562 * 6 5 4 10 10 H 1.07998 * 120.00437 * 359.97438 * 9 6 5 11 11 C 1.37880 * 119.99761 * 180.02562 * 9 6 5 12 12 N 1.31516 * 120.00064 * 359.97438 * 11 9 6 13 13 Si 1.86804 * 120.00079 * 179.97438 * 11 9 6 14 14 H 1.48502 * 109.47159 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47022 * 119.99540 * 13 11 9 16 16 H 1.48496 * 109.47179 * 239.99748 * 13 11 9 17 17 C 1.50696 * 109.47272 * 239.99632 * 2 1 3 18 18 C 1.38258 * 120.00273 * 279.73370 * 17 2 1 19 19 C 1.38215 * 120.00407 * 179.76759 * 18 17 2 20 20 C 1.38260 * 119.99271 * 0.47805 * 19 18 17 21 21 C 1.38208 * 120.00366 * 359.79391 * 20 19 18 22 22 S 1.76195 * 120.00144 * 179.97438 * 21 20 19 23 23 N 1.65599 * 107.22255 * 269.98086 * 22 21 20 24 24 O 1.42102 * 106.39904 * 23.52245 * 22 21 20 25 25 O 1.42099 * 106.40620 * 156.43825 * 22 21 20 26 26 C 1.38210 * 120.00026 * 100.00273 * 17 2 1 27 27 H 1.09000 * 109.47030 * 300.00758 * 1 2 3 28 28 H 1.09002 * 109.46644 * 60.00101 * 1 2 3 29 29 H 1.08999 * 109.47115 * 179.97438 * 1 2 3 30 30 H 1.00896 * 111.00309 * 151.04268 * 4 2 1 31 31 H 1.08990 * 109.47358 * 299.99539 * 5 4 2 32 32 H 1.09004 * 109.47457 * 60.00221 * 5 4 2 33 33 H 1.09000 * 109.46982 * 60.00960 * 7 6 5 34 34 H 1.09001 * 109.46986 * 180.02562 * 7 6 5 35 35 H 1.08995 * 109.47521 * 300.00160 * 7 6 5 36 36 H 1.09002 * 109.46981 * 59.99810 * 8 6 5 37 37 H 1.08991 * 109.47245 * 179.97438 * 8 6 5 38 38 H 1.08999 * 109.46856 * 299.99891 * 8 6 5 39 39 H 0.97002 * 120.00167 * 179.97438 * 12 11 9 40 40 H 1.07998 * 119.99790 * 359.97438 * 18 17 2 41 41 H 1.07990 * 120.00097 * 180.25182 * 19 18 17 42 42 H 1.08006 * 119.99472 * 179.76804 * 20 19 18 43 43 H 0.97003 * 120.00146 * 0.02562 * 23 22 21 44 44 H 0.97002 * 120.00094 * 179.97438 * 23 22 21 45 45 H 1.08003 * 119.99717 * 0.02562 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2226 2.3469 6 6 2.5949 -0.5332 3.5746 7 6 1.6449 -1.6888 3.8953 8 6 3.9920 -1.0864 3.2864 9 6 2.6587 0.4054 4.7518 10 1 2.3637 1.4379 4.6359 11 6 3.0947 -0.0536 5.9766 12 7 3.4545 -1.3107 6.1177 13 14 3.1745 1.1101 7.4358 14 1 2.7195 2.4604 7.0175 15 1 2.2951 0.6048 8.5205 16 1 4.5728 1.1902 7.9291 17 6 2.0324 -0.7105 -1.2304 18 6 2.0720 -2.0921 -1.2632 19 6 2.5283 -2.7438 -2.3934 20 6 2.9543 -2.0138 -3.4876 21 6 2.9200 -0.6326 -3.4527 22 16 3.4636 0.2976 -4.8469 23 7 5.0834 0.5786 -4.6475 24 8 3.3407 -0.5594 -5.9737 25 8 2.8231 1.5631 -4.7595 26 6 2.4588 0.0192 -2.3240 27 1 -0.3633 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 2.9172 -1.1206 1.0289 31 1 2.7588 1.0461 2.1183 32 1 1.0870 0.6164 2.5525 33 1 1.5983 -2.3679 3.0439 34 1 2.0097 -2.2270 4.7701 35 1 0.6496 -1.2947 4.1006 36 1 4.6688 -0.2631 3.0579 37 1 4.3572 -1.6244 4.1611 38 1 3.9454 -1.7654 2.4350 39 1 3.7616 -1.6336 6.9793 40 1 1.7433 -2.6622 -0.4068 41 1 2.5554 -3.8230 -2.4205 42 1 3.3143 -2.5230 -4.3694 43 1 5.5412 0.2404 -3.8620 44 1 5.5745 1.0807 -5.3165 45 1 2.4323 1.0985 -2.2966 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414159097.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:47 Heat of formation + Delta-G solvation = -57.036119 kcal Electronic energy + Delta-G solvation = -25817.721356 eV Core-core repulsion = 22154.743221 eV Total energy + Delta-G solvation = -3662.978135 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.83481 -37.38269 -37.17699 -36.06261 -34.93032 -33.48965 -31.96671 -31.49598 -30.25482 -28.65311 -25.64414 -25.29982 -24.56648 -23.76951 -22.72035 -20.92256 -19.58984 -18.54241 -18.21904 -17.63478 -16.87982 -16.25341 -16.03989 -15.66263 -15.41594 -15.20048 -14.54737 -14.40091 -13.99382 -13.79900 -13.24872 -12.87012 -12.70957 -12.50925 -12.39148 -12.35941 -12.31758 -12.20115 -11.97307 -11.87560 -11.59497 -11.26791 -11.08688 -10.97205 -10.85170 -10.80411 -10.62117 -10.52230 -10.22286 -10.10231 -9.58884 -9.44922 -9.23398 -8.97942 -8.67215 -8.34177 -7.85758 -5.96058 -4.06371 0.12773 0.59286 1.05153 2.83779 3.18547 3.27151 3.35885 3.39267 3.50712 4.16820 4.39785 4.57045 4.62173 4.71106 4.83727 5.07527 5.23200 5.27395 5.29879 5.52460 5.58106 5.66417 5.67901 5.75578 5.92691 6.04082 6.10049 6.25044 6.27704 6.33123 6.44455 6.62048 6.65604 6.68264 6.82989 7.00317 7.10513 7.30724 7.40057 7.63592 7.70229 7.77533 7.85575 8.15230 8.28844 8.50663 8.95254 9.59069 11.04493 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.022516 B = 0.002600 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.271040 B =10768.200711 C =11014.028243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.117 3.883 3 H 0.050 0.950 4 N -0.679 5.679 5 C 0.075 3.925 6 C 0.070 3.930 7 C -0.119 4.119 8 C -0.132 4.132 9 C -0.507 4.507 10 H 0.052 0.948 11 C 0.065 3.935 12 N -0.885 5.885 13 Si 0.888 3.112 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.285 1.285 17 C -0.100 4.100 18 C -0.037 4.037 19 C -0.141 4.141 20 C -0.025 4.025 21 C -0.677 4.677 22 S 2.703 3.297 23 N -1.251 6.251 24 O -0.967 6.967 25 O -0.965 6.965 26 C -0.016 4.016 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.338 0.662 31 H 0.015 0.985 32 H 0.059 0.941 33 H 0.019 0.981 34 H 0.074 0.926 35 H 0.018 0.982 36 H 0.018 0.982 37 H 0.083 0.917 38 H 0.009 0.991 39 H 0.257 0.743 40 H 0.144 0.856 41 H 0.134 0.866 42 H 0.139 0.861 43 H 0.418 0.582 44 H 0.419 0.581 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.663 -0.992 -19.677 19.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.007 3.993 3 H 0.068 0.932 4 N -0.312 5.312 5 C -0.053 4.053 6 C 0.069 3.931 7 C -0.176 4.176 8 C -0.190 4.190 9 C -0.546 4.546 10 H 0.071 0.929 11 C -0.136 4.136 12 N -0.523 5.523 13 Si 0.716 3.284 14 H -0.199 1.199 15 H -0.211 1.211 16 H -0.212 1.212 17 C -0.101 4.101 18 C -0.056 4.056 19 C -0.160 4.160 20 C -0.045 4.045 21 C -0.766 4.766 22 S 2.793 3.207 23 N -0.926 5.926 24 O -0.957 6.957 25 O -0.954 6.954 26 C -0.036 4.036 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.158 0.842 31 H 0.033 0.967 32 H 0.077 0.923 33 H 0.038 0.962 34 H 0.092 0.908 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.102 0.898 38 H 0.028 0.972 39 H 0.068 0.932 40 H 0.162 0.838 41 H 0.152 0.848 42 H 0.157 0.843 43 H 0.245 0.755 44 H 0.249 0.751 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.382 -1.093 -20.107 20.141 hybrid contribution 1.330 0.881 1.398 2.122 sum 1.713 -0.212 -18.709 18.788 Atomic orbital electron populations 1.21775 0.93641 1.02455 1.01296 1.20514 0.96260 0.95359 0.87137 0.93178 1.60790 1.33427 1.33797 1.03195 1.22229 0.99453 0.93053 0.90613 1.18087 0.91758 0.93185 0.90059 1.21637 0.97364 0.98358 1.00280 1.21835 0.98841 0.98375 0.99935 1.21145 1.43489 0.95886 0.94049 0.92934 1.24883 0.95213 0.94992 0.98473 1.69838 1.44648 1.13955 1.23906 0.86604 0.77542 0.81282 0.82925 1.19932 1.21096 1.21175 1.20278 0.99472 0.94317 0.96030 1.21586 0.92055 0.94224 0.97692 1.21361 1.00578 1.00579 0.93497 1.20934 0.93603 0.91648 0.98295 1.30363 1.20485 1.06956 1.18761 1.01422 0.72371 0.73726 0.73182 1.53059 1.30240 1.73672 1.35588 1.93594 1.85486 1.67964 1.48634 1.93607 1.74035 1.41523 1.86262 1.20868 0.91880 1.00292 0.90587 0.91840 0.93060 0.91986 0.84177 0.96720 0.92277 0.96198 0.90750 0.96275 0.96254 0.89784 0.97186 0.93230 0.83775 0.84827 0.84277 0.75517 0.75090 0.84218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 9.39 37.16 0.35 -1.39 16 2 C 0.12 1.60 2.82 -68.86 -0.19 1.41 16 3 H 0.05 0.70 7.66 -51.93 -0.40 0.30 16 4 N -0.68 -10.95 4.90 -107.94 -0.53 -11.48 16 5 C 0.07 1.46 4.38 -3.82 -0.02 1.45 16 6 C 0.07 1.61 0.57 -155.66 -0.09 1.52 16 7 C -0.12 -2.77 8.09 37.16 0.30 -2.46 16 8 C -0.13 -2.98 7.92 37.16 0.29 -2.69 16 9 C -0.51 -13.27 8.01 -34.44 -0.28 -13.55 16 10 H 0.05 1.38 7.74 -52.49 -0.41 0.98 16 11 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 12 N -0.88 -23.93 9.35 55.43 0.52 -23.41 16 13 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 14 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 17 C -0.10 -1.21 4.72 -104.63 -0.49 -1.70 16 18 C -0.04 -0.42 9.00 -39.58 -0.36 -0.77 16 19 C -0.14 -1.36 10.05 -39.58 -0.40 -1.75 16 20 C -0.03 -0.24 9.52 -39.58 -0.38 -0.62 16 21 C -0.68 -6.81 5.94 -39.59 -0.24 -7.05 16 22 S 2.70 25.44 6.28 -107.50 -0.68 24.77 16 23 N -1.25 -7.16 9.55 60.35 0.58 -6.58 16 24 O -0.97 -11.68 17.28 -57.17 -0.99 -12.67 16 25 O -0.96 -12.28 17.28 -57.17 -0.99 -13.27 16 26 C -0.02 -0.18 9.14 -39.58 -0.36 -0.55 16 27 H 0.06 0.88 7.45 -51.93 -0.39 0.49 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.34 5.43 6.02 -39.29 -0.24 5.19 16 31 H 0.01 0.29 8.05 -51.93 -0.42 -0.13 16 32 H 0.06 1.19 7.44 -51.93 -0.39 0.80 16 33 H 0.02 0.41 7.60 -51.93 -0.39 0.02 16 34 H 0.07 1.92 6.07 -51.93 -0.32 1.61 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 38 H 0.01 0.19 6.57 -51.93 -0.34 -0.15 16 39 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 40 H 0.14 1.63 7.71 -52.49 -0.40 1.23 16 41 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.14 1.07 7.62 -52.48 -0.40 0.67 16 43 H 0.42 1.65 8.92 -34.47 -0.31 1.34 16 44 H 0.42 1.68 8.96 -34.47 -0.31 1.37 16 45 H 0.14 1.46 7.60 -52.48 -0.40 1.06 16 LS Contribution 370.65 15.07 5.59 5.59 Total: -1.00 -32.15 370.65 -10.13 -42.28 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -6.67 Total: 5.57 kcal Atomic # 6 Polarization: -24.57 SS G_CDS: -1.94 Total: -26.52 kcal Atomic # 7 Polarization: -42.04 SS G_CDS: 0.57 Total: -41.48 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -1.98 Total: -25.93 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 25.44 SS G_CDS: -0.68 Total: 24.77 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.15 -10.13 -42.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414159097.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.753 kcal (2) G-P(sol) polarization free energy of solvation -32.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds