Wall clock time and date at job start Tue Mar 31 2020 15:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.46776 * 2 1 4 4 C 1.53005 * 109.46914 * 240.00239 * 2 1 3 5 5 C 1.53002 * 109.46752 * 174.99883 * 4 2 1 6 6 C 1.52995 * 109.46875 * 179.97438 * 5 4 2 7 7 C 1.50706 * 109.47285 * 179.97438 * 6 5 4 8 8 C 1.38675 * 120.41529 * 89.99913 * 7 6 5 9 9 C 1.38631 * 118.41792 * 179.97438 * 8 7 6 10 10 C 1.38221 * 119.16077 * 0.25627 * 9 8 7 11 11 N 1.31860 * 120.76509 * 359.49797 * 10 9 8 12 12 C 1.31882 * 121.72556 * 0.49011 * 11 10 9 13 13 N 1.46501 * 109.47030 * 120.00496 * 2 1 3 14 14 S 1.65605 * 119.99549 * 264.99765 * 13 2 1 15 15 O 1.42099 * 104.27390 * 181.07175 * 14 13 2 16 16 O 1.42100 * 104.27948 * 308.93070 * 14 13 2 17 17 C 1.81402 * 104.44695 * 65.00305 * 14 13 2 18 18 C 1.53007 * 109.46661 * 179.97438 * 17 14 13 19 19 C 1.50700 * 109.46618 * 180.02562 * 18 17 14 20 20 H 1.07998 * 120.00471 * 359.97438 * 19 18 17 21 21 C 1.37884 * 119.99691 * 180.02562 * 19 18 17 22 22 N 1.31515 * 119.99804 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99963 * 359.97438 * 21 19 18 24 24 H 1.48494 * 109.47061 * 89.99869 * 23 21 19 25 25 H 1.48501 * 109.47021 * 210.00343 * 23 21 19 26 26 H 1.48503 * 109.47097 * 329.99873 * 23 21 19 27 27 H 1.09004 * 109.47336 * 60.00084 * 1 2 3 28 28 H 1.09005 * 109.46981 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47411 * 299.99371 * 1 2 3 30 30 H 1.09003 * 109.47054 * 55.00028 * 4 2 1 31 31 H 1.09001 * 109.46893 * 294.99772 * 4 2 1 32 32 H 1.08995 * 109.47078 * 60.00013 * 5 4 2 33 33 H 1.09001 * 109.47331 * 299.99621 * 5 4 2 34 34 H 1.09008 * 109.47427 * 59.99953 * 6 5 4 35 35 H 1.08998 * 109.47562 * 299.99860 * 6 5 4 36 36 H 1.07998 * 120.79161 * 359.96013 * 8 7 6 37 37 H 1.08002 * 120.41548 * 179.97438 * 9 8 7 38 38 H 1.08002 * 119.62066 * 179.74470 * 10 9 8 39 39 H 1.07993 * 119.62126 * 179.75488 * 12 11 10 40 40 H 0.96992 * 120.00154 * 85.00017 * 13 2 1 41 41 H 1.09000 * 109.47062 * 299.99325 * 17 14 13 42 42 H 1.08996 * 109.47351 * 60.00032 * 17 14 13 43 43 H 1.09000 * 109.46918 * 299.99519 * 18 17 14 44 44 H 1.08996 * 109.47125 * 60.00000 * 18 17 14 45 45 H 0.97001 * 119.99430 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3137 6 6 4.0748 -1.3349 -2.5627 7 6 5.5767 -1.2281 -2.6265 8 6 6.3752 -2.1922 -2.0300 9 6 7.7519 -2.0533 -2.1145 10 6 8.2792 -0.9633 -2.7811 11 7 7.4892 -0.0681 -3.3407 12 6 6.1755 -0.1683 -3.2807 13 7 2.0183 -0.6907 1.1961 14 16 2.4122 0.1771 2.5505 15 8 2.8606 -0.8030 3.4765 16 8 3.2875 1.1906 2.0751 17 6 0.8407 0.8987 3.0985 18 6 1.0751 1.7339 4.3589 19 6 -0.2305 2.3329 4.8145 20 1 -1.1367 2.1378 4.2604 21 6 -0.2679 3.1308 5.9384 22 7 -1.4072 3.6540 6.3357 23 14 1.2996 3.4687 6.8965 24 1 1.9565 4.6865 6.3574 25 1 0.9688 3.6777 8.3291 26 1 2.2197 2.3105 6.7649 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 1.6053 -0.2616 -2.1370 31 1 1.7516 -1.7715 -1.2056 32 1 3.9994 -1.0727 -0.4261 33 1 3.8532 0.4371 -1.3574 34 1 3.6402 -0.8758 -3.4507 35 1 3.7866 -2.3852 -2.5186 36 1 5.9350 -3.0313 -1.5117 37 1 8.4042 -2.7851 -1.6611 38 1 9.3507 -0.8456 -2.8479 39 1 5.5607 0.5867 -3.7478 40 1 2.1110 -1.6562 1.1948 41 1 0.4387 1.5351 2.3102 42 1 0.1315 0.1008 3.3185 43 1 1.4770 1.0971 5.1471 44 1 1.7844 2.5318 4.1394 45 1 -1.4334 4.2156 7.1262 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416540241.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:55 Heat of formation + Delta-G solvation = -67.252163 kcal Electronic energy + Delta-G solvation = -25169.796961 eV Core-core repulsion = 21506.375825 eV Total energy + Delta-G solvation = -3663.421136 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.45196 -37.78464 -36.65503 -35.57139 -34.93139 -33.97539 -32.42952 -31.52289 -31.33547 -29.74565 -26.85189 -25.91496 -23.84593 -23.28660 -21.47327 -21.25798 -21.20988 -19.17039 -17.73762 -17.38190 -16.91584 -16.72489 -16.30724 -15.59293 -15.47043 -15.12862 -14.53163 -14.48137 -14.31137 -14.05125 -13.79833 -13.63412 -13.44830 -13.32970 -12.94185 -12.64704 -12.45309 -12.06991 -12.01353 -11.86193 -11.73999 -11.68904 -11.49691 -11.30454 -11.24591 -11.18567 -10.89782 -10.84206 -10.45806 -10.17311 -10.05947 -9.82461 -9.69857 -9.50113 -9.23594 -9.15298 -8.67385 -6.17825 -4.19024 0.66866 0.82466 1.00117 3.01522 3.25864 3.33238 3.37500 3.52173 4.11403 4.14860 4.34899 4.35510 4.47790 4.52455 4.58710 4.67279 4.72251 4.83153 4.89195 5.04407 5.10342 5.14465 5.20580 5.30099 5.35627 5.44864 5.46638 5.53870 5.54856 5.57994 5.63196 5.75164 5.77734 5.83702 6.03770 6.07186 6.13015 6.19878 6.31672 6.42566 6.80511 6.91561 7.06003 7.53609 7.70129 8.35168 8.83141 9.41987 10.94505 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.018744 B = 0.002608 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.472523 B =10732.756492 C =11475.871078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.143 3.857 3 H 0.093 0.907 4 C -0.118 4.118 5 C -0.119 4.119 6 C -0.077 4.077 7 C -0.130 4.130 8 C -0.075 4.075 9 C -0.170 4.170 10 C 0.089 3.911 11 N -0.484 5.484 12 C 0.100 3.900 13 N -1.119 6.119 14 S 2.588 3.412 15 O -0.969 6.969 16 O -0.966 6.966 17 C -0.585 4.585 18 C -0.007 4.007 19 C -0.519 4.519 20 H 0.078 0.922 21 C 0.071 3.929 22 N -0.895 5.895 23 Si 0.869 3.131 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.262 1.262 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.154 0.846 39 H 0.154 0.846 40 H 0.412 0.588 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.032 0.968 44 H 0.028 0.972 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.622 -13.206 -20.735 26.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.035 3.965 3 H 0.111 0.889 4 C -0.157 4.157 5 C -0.156 4.156 6 C -0.115 4.115 7 C -0.132 4.132 8 C -0.101 4.101 9 C -0.190 4.190 10 C -0.068 4.068 11 N -0.192 5.192 12 C -0.057 4.057 13 N -0.876 5.876 14 S 2.685 3.315 15 O -0.960 6.960 16 O -0.956 6.956 17 C -0.717 4.717 18 C -0.047 4.047 19 C -0.558 4.558 20 H 0.096 0.904 21 C -0.131 4.131 22 N -0.533 5.533 23 Si 0.695 3.305 24 H -0.197 1.197 25 H -0.208 1.208 26 H -0.186 1.186 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.171 0.829 39 H 0.172 0.828 40 H 0.245 0.755 41 H 0.144 0.856 42 H 0.145 0.855 43 H 0.050 0.950 44 H 0.046 0.954 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.807 -12.118 -20.698 26.733 hybrid contribution -0.350 -0.849 1.023 1.374 sum 11.457 -12.967 -19.675 26.201 Atomic orbital electron populations 1.22489 0.95191 1.03014 1.03348 1.20848 0.93806 0.97014 0.84812 0.88859 1.21841 0.95472 1.01190 0.97224 1.21629 0.95286 1.01512 0.97202 1.20595 0.89689 1.01792 0.99377 1.20971 0.97397 0.96055 0.98812 1.21538 0.93596 0.98386 0.96578 1.22164 0.95956 0.99914 1.00989 1.22761 1.00075 0.90221 0.93703 1.67683 1.05618 1.27878 1.18045 1.22704 0.90839 0.96129 0.96012 1.55806 1.84337 1.19453 1.28050 1.05625 0.78197 0.74585 0.73114 1.93556 1.80560 1.59280 1.62575 1.93553 1.62298 1.60267 1.79434 1.30408 1.19394 1.11766 1.10180 1.19411 1.00193 0.94823 0.90227 1.20841 0.93050 1.30269 1.11624 0.90411 1.24990 0.96214 0.95026 0.96902 1.69882 1.25245 1.33010 1.25198 0.86927 0.84087 0.79745 0.79707 1.19655 1.20757 1.18639 0.91286 0.91834 0.91233 0.90454 0.91213 0.91358 0.91121 0.90505 0.90764 0.84876 0.84808 0.82893 0.82832 0.75481 0.85607 0.85478 0.94992 0.95397 0.92380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.60 9.48 37.16 0.35 -1.25 16 2 C 0.14 1.38 2.81 -67.93 -0.19 1.19 16 3 H 0.09 1.00 7.48 -51.93 -0.39 0.61 16 4 C -0.12 -0.85 4.81 -26.73 -0.13 -0.98 16 5 C -0.12 -1.00 5.08 -26.73 -0.14 -1.13 16 6 C -0.08 -0.51 5.37 -27.88 -0.15 -0.66 16 7 C -0.13 -1.12 5.15 -104.48 -0.54 -1.66 16 8 C -0.07 -0.62 9.86 -39.28 -0.39 -1.01 16 9 C -0.17 -1.36 10.11 -39.44 -0.40 -1.76 16 10 C 0.09 0.81 11.18 -17.55 -0.20 0.61 16 11 N -0.48 -5.35 10.36 -13.25 -0.14 -5.49 16 12 C 0.10 0.97 10.86 -17.55 -0.19 0.78 16 13 N -1.12 -12.68 4.81 -4.89 -0.02 -12.71 16 14 S 2.59 42.68 5.44 -107.50 -0.58 42.10 16 15 O -0.97 -18.82 18.08 -57.54 -1.04 -19.86 16 16 O -0.97 -18.53 17.39 -57.54 -1.00 -19.53 16 17 C -0.58 -10.42 5.16 37.16 0.19 -10.23 16 18 C -0.01 -0.17 4.05 -27.88 -0.11 -0.28 16 19 C -0.52 -14.35 9.66 -34.44 -0.33 -14.68 16 20 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 21 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 22 N -0.90 -26.92 13.96 55.43 0.77 -26.15 16 23 Si 0.87 21.46 27.47 -169.99 -4.67 16.79 16 24 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.71 5.78 -51.93 -0.30 0.41 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.67 7.75 -51.93 -0.40 0.27 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.42 8.09 -51.92 -0.42 0.00 16 35 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 36 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 37 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 38 H 0.15 1.00 8.06 -52.49 -0.42 0.57 16 39 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 40 H 0.41 3.80 8.80 -34.47 -0.30 3.49 16 41 H 0.13 2.01 6.77 -51.92 -0.35 1.66 16 42 H 0.13 2.06 8.14 -51.93 -0.42 1.64 16 43 H 0.03 0.76 7.20 -51.93 -0.37 0.38 16 44 H 0.03 0.65 7.57 -51.93 -0.39 0.26 16 45 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 382.25 15.07 5.76 5.76 Total: -1.00 -36.08 382.25 -10.40 -46.48 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -7.17 Total: 1.72 kcal Atomic # 6 Polarization: -26.80 SS G_CDS: -2.32 Total: -29.12 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: 0.61 Total: -44.35 kcal Atomic # 8 Polarization: -37.35 SS G_CDS: -2.04 Total: -39.39 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Atomic # 16 Polarization: 42.68 SS G_CDS: -0.58 Total: 42.10 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.08 -10.40 -46.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416540241.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.770 kcal (2) G-P(sol) polarization free energy of solvation -36.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds