Wall clock time and date at job start Tue Mar 31 2020 14:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 115.55090 * 2 1 4 4 C 1.53075 * 117.53072 * 214.29076 * 2 1 3 5 5 C 1.52990 * 117.50012 * 145.67785 * 2 1 3 6 6 H 1.09005 * 117.50217 * 215.02821 * 5 2 1 7 7 C 1.50708 * 117.49961 * 0.02562 * 5 2 1 8 8 C 1.34957 * 125.52310 * 84.29406 * 7 5 2 9 9 C 1.41211 * 108.23959 * 180.14867 * 8 7 5 10 10 N 1.32934 * 126.37628 * 179.85613 * 9 8 7 11 11 C 1.33812 * 119.99924 * 179.70994 * 10 9 8 12 12 O 1.21840 * 120.00039 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99874 * 179.72554 * 11 10 9 14 14 C 1.39888 * 120.00100 * 174.56770 * 13 11 10 15 15 C 1.39309 * 119.95043 * 145.61500 * 14 13 11 16 16 C 1.38485 * 120.42366 * 179.72418 * 15 14 13 17 17 C 1.37679 * 120.32378 * 0.55080 * 16 15 14 18 18 C 1.40744 * 119.88963 * 359.72699 * 17 16 15 19 19 C 1.41409 * 120.20796 * 180.02562 * 18 17 16 20 20 H 1.08008 * 119.99612 * 143.81131 * 19 18 17 21 21 C 1.39924 * 120.00509 * 323.80940 * 19 18 17 22 22 N 1.30835 * 120.00575 * 171.35880 * 21 19 18 23 23 Si 1.86808 * 119.99601 * 351.36239 * 21 19 18 24 24 H 1.48497 * 109.47170 * 87.65664 * 23 21 19 25 25 H 1.48504 * 109.46573 * 207.65624 * 23 21 19 26 26 H 1.48496 * 109.46926 * 327.65627 * 23 21 19 27 27 C 1.38251 * 119.94568 * 325.88756 * 14 13 11 28 28 N 1.37426 * 107.24564 * 359.59845 * 9 8 7 29 29 H 0.96995 * 126.36778 * 180.24188 * 28 9 8 30 30 N 1.36457 * 125.52465 * 263.99465 * 7 5 2 31 31 H 0.97001 * 125.84810 * 359.96439 * 30 7 5 32 32 H 1.09004 * 109.47567 * 279.28205 * 1 2 3 33 33 H 1.09000 * 109.47627 * 39.28029 * 1 2 3 34 34 H 1.08999 * 109.47606 * 159.28221 * 1 2 3 35 35 H 1.09000 * 117.49144 * 145.04151 * 4 2 1 36 36 H 1.09003 * 117.51437 * 0.02562 * 4 2 1 37 37 H 1.07996 * 125.88454 * 0.02562 * 8 7 5 38 38 H 0.97001 * 120.00220 * 354.56940 * 13 11 10 39 39 H 1.08002 * 119.78132 * 0.02562 * 15 14 13 40 40 H 1.07999 * 119.83540 * 180.25435 * 16 15 14 41 41 H 1.07997 * 120.05410 * 179.70172 * 17 16 15 42 42 H 0.96997 * 119.99988 * 180.02562 * 22 21 19 43 43 H 1.07995 * 120.16637 * 359.97438 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2375 -1.1215 -0.7648 5 6 2.2364 -1.1208 0.7652 6 1 3.1711 -0.8747 1.2691 7 6 1.3720 -2.1407 1.4607 8 6 0.8332 -3.2357 0.8846 9 6 0.0910 -3.9308 1.8644 10 7 -0.5901 -5.0582 1.6849 11 6 -1.2473 -5.6132 2.7099 12 8 -1.2218 -5.0850 3.8076 13 7 -1.9424 -6.7533 2.5266 14 6 -2.5347 -7.3948 3.6196 15 6 -3.7482 -8.0604 3.4614 16 6 -4.3404 -8.7036 4.5354 17 6 -3.7412 -8.6824 5.7748 18 6 -2.5180 -8.0090 5.9511 19 6 -1.8964 -7.9834 7.2210 20 1 -0.8198 -8.0272 7.2962 21 6 -2.6759 -7.9013 8.3801 22 7 -2.1189 -8.0474 9.5549 23 14 -4.5121 -7.5831 8.2500 24 1 -5.2288 -8.8748 8.0984 25 1 -4.9837 -6.8966 9.4795 26 1 -4.7833 -6.7250 7.0689 27 6 -1.9176 -7.3623 4.8563 28 7 0.2086 -3.2278 3.0394 29 1 -0.1900 -3.4620 3.8920 30 7 1.0119 -2.1097 2.7766 31 1 1.2684 -1.4305 3.4199 32 1 -0.3634 0.1658 1.0142 33 1 -0.3634 0.7954 -0.6506 34 1 -0.3634 -0.9612 -0.3635 35 1 3.1728 -0.8753 -1.2675 36 1 1.6130 -1.8593 -1.2684 37 1 0.9480 -3.5288 -0.1485 38 1 -2.0320 -7.1290 1.6368 39 1 -4.2277 -8.0791 2.4939 40 1 -5.2792 -9.2203 4.4012 41 1 -4.2093 -9.1813 6.6105 42 1 -2.6594 -7.9908 10.3583 43 1 -0.9788 -6.8432 4.9809 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455906033.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:00 Heat of formation + Delta-G solvation = 118.463867 kcal Electronic energy + Delta-G solvation = -26323.302499 eV Core-core repulsion = 22564.783414 eV Total energy + Delta-G solvation = -3758.519085 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.69940 -39.56320 -38.27095 -37.37241 -34.50447 -33.63078 -32.98458 -31.43232 -30.22416 -29.98132 -28.97275 -28.11486 -25.08616 -24.45103 -23.03562 -21.69349 -20.79896 -20.77170 -20.54401 -19.25805 -18.42316 -17.61950 -16.83286 -16.64076 -15.85232 -15.45722 -15.38764 -14.99483 -14.60167 -14.42538 -14.31491 -14.08934 -13.60588 -13.39956 -13.28998 -12.77937 -12.68052 -12.49477 -12.31775 -11.94829 -11.92389 -11.50793 -11.14658 -11.06754 -10.79785 -10.73423 -10.65821 -10.53667 -10.34333 -9.83605 -9.66013 -9.54111 -9.20210 -8.95190 -8.73338 -7.70318 -7.49746 -6.88716 -6.73538 -4.35904 1.03807 1.58879 2.30220 2.72236 2.80227 3.16294 3.21910 3.32160 3.44391 3.57649 3.83520 4.04171 4.13407 4.16139 4.28635 4.32609 4.56243 4.70820 4.81630 5.04332 5.14803 5.28873 5.33357 5.35135 5.48176 5.52691 5.57325 5.77391 5.84883 5.97536 6.08745 6.30625 6.40990 6.55769 6.71595 6.87986 6.91507 6.96576 7.33641 7.52183 7.53318 7.66845 7.72635 7.98993 8.03238 8.26027 8.39566 8.51966 8.78973 8.96236 9.35250 10.30142 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.020419 B = 0.002608 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.948462 B =10734.584187 C =11445.240713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.133 4.133 3 H 0.113 0.887 4 C -0.148 4.148 5 C -0.117 4.117 6 H 0.128 0.872 7 C 0.212 3.788 8 C -0.263 4.263 9 C 0.494 3.506 10 N -0.654 5.654 11 C 0.670 3.330 12 O -0.623 6.623 13 N -0.657 5.657 14 C 0.178 3.822 15 C -0.256 4.256 16 C -0.069 4.069 17 C -0.247 4.247 18 C 0.103 3.897 19 C -0.449 4.449 20 H 0.088 0.912 21 C 0.082 3.918 22 N -0.828 5.828 23 Si 0.914 3.086 24 H -0.270 1.270 25 H -0.295 1.295 26 H -0.247 1.247 27 C -0.190 4.190 28 N -0.488 5.488 29 H 0.459 0.541 30 N -0.490 5.490 31 H 0.442 0.558 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.167 0.833 38 H 0.405 0.595 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.282 0.718 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.597 17.817 -19.031 27.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.152 4.152 3 H 0.131 0.869 4 C -0.185 4.185 5 C -0.137 4.137 6 H 0.145 0.855 7 C 0.091 3.909 8 C -0.295 4.295 9 C 0.238 3.762 10 N -0.416 5.416 11 C 0.370 3.630 12 O -0.504 6.504 13 N -0.300 5.300 14 C 0.085 3.915 15 C -0.277 4.277 16 C -0.088 4.088 17 C -0.267 4.267 18 C 0.100 3.900 19 C -0.479 4.479 20 H 0.106 0.894 21 C -0.133 4.133 22 N -0.454 5.454 23 Si 0.742 3.258 24 H -0.196 1.196 25 H -0.223 1.223 26 H -0.170 1.170 27 C -0.211 4.211 28 N -0.230 5.230 29 H 0.318 0.682 30 N -0.207 5.207 31 H 0.288 0.712 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.185 0.815 38 H 0.239 0.761 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.121 0.879 42 H 0.092 0.908 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 8.411 17.696 -18.166 26.719 hybrid contribution -0.875 0.323 1.236 1.549 sum 7.536 18.019 -16.929 25.847 Atomic orbital electron populations 1.21433 0.92119 1.03013 1.02166 1.22534 0.96047 0.94190 1.02425 0.86868 1.23251 1.03220 1.01116 0.90952 1.20731 0.99509 0.98400 0.95025 0.85456 1.19903 0.93660 0.95012 0.82340 1.20368 1.10023 0.97918 1.01178 1.20238 0.87229 0.85996 0.82718 1.69403 1.27536 1.12900 1.31755 1.17215 0.79593 0.81611 0.84555 1.90613 1.67197 1.63528 1.29043 1.42234 1.53291 1.24214 1.10228 1.17447 0.92311 0.94847 0.86918 1.20143 0.97155 1.11718 0.98711 1.20381 0.97667 0.97793 0.92909 1.21162 1.00952 1.07949 0.96618 1.17664 0.90859 0.88115 0.93378 1.19378 0.96279 1.43813 0.88405 0.89398 1.26044 1.01162 0.91530 0.94605 1.69643 1.38940 1.37880 0.98920 0.86317 0.81984 0.79652 0.77890 1.19600 1.22322 1.17010 1.21056 1.02747 1.05241 0.92089 1.47291 1.45195 1.15244 1.15275 0.68157 1.44067 1.46693 1.20039 1.09920 0.71205 0.92323 0.91679 0.91491 0.87508 0.87253 0.81525 0.76080 0.88474 0.88401 0.87906 0.90798 0.86915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.68 9.25 37.16 0.34 -0.34 16 2 C -0.13 -0.50 6.41 -90.59 -0.58 -1.08 16 3 H 0.11 0.28 8.14 -51.93 -0.42 -0.15 16 4 C -0.15 -0.52 9.64 -26.70 -0.26 -0.77 16 5 C -0.12 -0.50 6.32 -91.78 -0.58 -1.08 16 6 H 0.13 0.35 8.14 -51.93 -0.42 -0.07 16 7 C 0.21 1.63 5.78 -81.70 -0.47 1.16 16 8 C -0.26 -2.74 9.93 -39.62 -0.39 -3.13 16 9 C 0.49 7.40 7.73 -155.28 -1.20 6.20 16 10 N -0.65 -11.88 10.59 -15.79 -0.17 -12.05 16 11 C 0.67 14.36 8.19 -87.78 -0.72 13.64 16 12 O -0.62 -14.74 11.46 5.06 0.06 -14.68 16 13 N -0.66 -13.72 5.34 -14.46 -0.08 -13.80 16 14 C 0.18 4.27 6.26 -83.78 -0.52 3.74 16 15 C -0.26 -5.73 9.97 -39.09 -0.39 -6.12 16 16 C -0.07 -1.58 10.02 -39.69 -0.40 -1.98 16 17 C -0.25 -6.39 7.07 -38.84 -0.27 -6.66 16 18 C 0.10 2.88 5.04 -106.85 -0.54 2.34 16 19 C -0.45 -13.26 9.59 -37.74 -0.36 -13.62 16 20 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 21 C 0.08 2.34 5.48 -17.35 -0.10 2.24 16 22 N -0.83 -23.72 13.93 55.55 0.77 -22.94 16 23 Si 0.91 22.67 24.48 -169.99 -4.16 18.51 16 24 H -0.27 -6.38 6.53 56.52 0.37 -6.02 16 25 H -0.30 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.25 -6.37 6.87 56.52 0.39 -5.99 16 27 C -0.19 -5.09 8.39 -38.68 -0.32 -5.42 16 28 N -0.49 -6.61 7.05 31.33 0.22 -6.39 16 29 H 0.46 7.25 6.35 -182.55 -1.16 6.09 16 30 N -0.49 -4.12 7.40 33.67 0.25 -3.87 16 31 H 0.44 2.22 8.96 -182.55 -1.64 0.59 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.43 7.65 -51.93 -0.40 0.03 16 35 H 0.11 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.11 0.42 6.98 -51.93 -0.36 0.06 16 37 H 0.17 1.43 7.24 -52.49 -0.38 1.05 16 38 H 0.40 7.16 8.92 -40.82 -0.36 6.80 16 39 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 40 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 41 H 0.10 2.62 4.70 -52.49 -0.25 2.38 16 42 H 0.28 7.34 8.30 -40.82 -0.34 7.01 16 43 H 0.11 3.16 6.47 -52.49 -0.34 2.82 16 LS Contribution 356.28 15.07 5.37 5.37 Total: -1.00 -35.95 356.28 -11.95 -47.90 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -7.45 Total: 12.83 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -6.77 Total: -10.87 kcal Atomic # 7 Polarization: -60.05 SS G_CDS: 1.00 Total: -59.05 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: 0.06 Total: -14.68 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.16 Total: 18.51 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.95 -11.95 -47.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455906033.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.361 kcal (2) G-P(sol) polarization free energy of solvation -35.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds