Wall clock time and date at job start Tue Mar 31 2020 15:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47244 * 2 1 4 4 N 1.46904 * 109.46849 * 119.99584 * 2 1 3 5 5 C 1.46897 * 111.00121 * 274.99975 * 4 2 1 6 6 C 1.53004 * 109.46835 * 180.02562 * 5 4 2 7 7 H 1.08999 * 109.46886 * 55.00236 * 6 5 4 8 8 C 1.47193 * 109.47071 * 294.99717 * 6 5 4 9 9 N 4.90937 * 82.27731 * 119.13400 * 2 1 3 10 10 C 1.53009 * 109.46789 * 174.99767 * 6 5 4 11 11 C 1.50704 * 109.46725 * 184.99943 * 10 6 5 12 12 H 1.07995 * 120.00137 * 359.97438 * 11 10 6 13 13 C 1.37877 * 119.99799 * 180.02562 * 11 10 6 14 14 N 1.31523 * 119.99766 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00170 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47072 * 89.99575 * 15 13 11 17 17 H 1.48494 * 109.47047 * 209.99846 * 15 13 11 18 18 H 1.48502 * 109.46747 * 329.99998 * 15 13 11 19 19 C 1.50698 * 109.47068 * 239.99661 * 2 1 3 20 20 N 1.30038 * 126.18929 * 284.97391 * 19 2 1 21 21 O 1.21289 * 110.48068 * 180.02562 * 20 19 2 22 22 C 1.34187 * 109.69580 * 0.02562 * 21 20 19 23 23 C 1.47821 * 126.67244 * 179.97438 * 22 21 20 24 24 C 1.39586 * 120.14184 * 180.02562 * 23 22 21 25 25 C 1.37956 * 119.84871 * 180.02562 * 24 23 22 26 26 C 1.38365 * 120.14522 * 359.97438 * 25 24 23 27 27 C 1.38349 * 120.29321 * 0.02562 * 26 25 24 28 28 C 1.37953 * 120.14975 * 0.02562 * 27 26 25 29 29 N 1.32123 * 106.65516 * 0.22785 * 22 21 20 30 30 H 1.09000 * 109.47223 * 300.00102 * 1 2 3 31 31 H 1.08997 * 109.47171 * 59.99732 * 1 2 3 32 32 H 1.08996 * 109.47478 * 180.02562 * 1 2 3 33 33 H 1.00904 * 110.99724 * 151.04894 * 4 2 1 34 34 H 1.09001 * 109.47241 * 300.00263 * 5 4 2 35 35 H 1.09001 * 109.47409 * 60.00577 * 5 4 2 36 36 H 1.08998 * 109.47143 * 304.99898 * 10 6 5 37 37 H 1.09002 * 109.46496 * 65.00208 * 10 6 5 38 38 H 0.96998 * 119.99399 * 180.02562 * 14 13 11 39 39 H 1.07993 * 120.07630 * 0.02562 * 24 23 22 40 40 H 1.07998 * 119.92711 * 180.25412 * 25 24 23 41 41 H 1.08003 * 119.85108 * 180.02562 * 26 25 24 42 42 H 1.08004 * 119.92828 * 179.97438 * 27 26 25 43 43 H 1.08005 * 120.07863 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0824 0.2227 2.3469 6 6 2.5961 -0.5328 3.5742 7 1 3.5519 -1.0010 3.3389 8 6 1.6227 -1.5690 3.9555 9 7 0.8703 -2.3685 4.2494 10 6 2.7800 0.4462 4.7356 11 6 3.4010 -0.2731 5.9053 12 1 3.6401 -1.3234 5.8283 13 6 3.6628 0.4096 7.0743 14 7 3.3712 1.6887 7.1682 15 14 4.4332 -0.4817 8.5239 16 1 5.9125 -0.3910 8.4314 17 1 3.9769 0.1460 9.7900 18 1 4.0224 -1.9086 8.5026 19 6 2.0323 -0.7105 -1.2304 20 7 2.0326 -1.9957 -1.4286 21 8 2.5022 -2.2573 -2.5158 22 6 2.8603 -1.1238 -3.1384 23 6 3.4707 -1.0083 -4.4798 24 6 3.7911 0.2475 -4.9982 25 6 4.3601 0.3484 -6.2509 26 6 4.6137 -0.7917 -6.9927 27 6 4.2986 -2.0394 -6.4846 28 6 3.7283 -2.1542 -5.2338 29 7 2.5662 -0.1315 -2.3172 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 2.9173 -1.1204 1.0289 34 1 2.7588 1.0463 2.1182 35 1 1.0870 0.6164 2.5526 36 1 3.4317 1.2622 4.4233 37 1 1.8101 0.8478 5.0292 38 1 3.5558 2.1690 7.9905 39 1 3.5939 1.1381 -4.4201 40 1 4.6122 1.3191 -6.6516 41 1 5.0597 -0.7073 -7.9727 42 1 4.4988 -2.9254 -7.0689 43 1 3.4824 -3.1288 -4.8384 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000516686090.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:55 Heat of formation + Delta-G solvation = 113.063426 kcal Electronic energy + Delta-G solvation = -25504.885960 eV Core-core repulsion = 21746.132695 eV Total energy + Delta-G solvation = -3758.753265 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.75584 -39.62616 -38.04868 -36.43012 -35.28109 -33.88166 -33.26590 -31.97986 -31.51828 -30.52303 -29.61832 -26.52974 -25.07278 -24.93961 -23.32732 -22.59442 -22.41573 -21.78668 -20.49626 -18.43724 -18.30994 -17.25078 -17.02410 -16.45208 -16.25705 -15.52274 -15.27546 -15.04254 -14.61493 -14.38258 -14.23817 -13.99464 -13.62900 -13.55107 -12.92014 -12.80468 -12.76495 -12.36207 -12.14930 -12.09680 -11.95719 -11.88432 -11.79219 -11.63388 -11.41711 -11.25014 -11.15251 -11.05185 -10.72841 -10.66072 -10.51018 -10.25774 -9.56775 -9.53824 -9.24718 -9.12457 -8.51210 -8.44569 -6.10289 -4.13343 0.04860 0.83070 1.34652 2.05651 2.40137 3.17966 3.25783 3.29092 3.36022 3.41168 3.73959 3.74553 3.84697 4.10348 4.38361 4.39998 4.41635 4.52945 4.65938 4.82740 4.88934 4.92522 5.03597 5.10514 5.25476 5.27893 5.40490 5.45834 5.50140 5.56216 5.66973 5.69719 5.75010 5.85234 5.88764 5.92519 5.96918 6.16342 6.30879 6.33582 6.45756 6.90384 7.27963 7.40888 7.51374 7.85051 7.94774 8.22127 8.59495 8.91290 9.52146 11.00567 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.020684 B = 0.002028 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.397589 B =13801.888627 C =14143.735183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.178 3.822 3 H 0.080 0.920 4 N -0.681 5.681 5 C 0.065 3.935 6 C 0.011 3.989 7 H 0.099 0.901 8 C 0.253 3.747 9 N -0.476 5.476 10 C 0.032 3.968 11 C -0.526 4.526 12 H 0.057 0.943 13 C 0.062 3.938 14 N -0.891 5.891 15 Si 0.892 3.108 16 H -0.279 1.279 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.172 3.828 20 N -0.355 5.355 21 O 0.087 5.913 22 C 0.215 3.785 23 C -0.028 4.028 24 C -0.063 4.063 25 C -0.123 4.123 26 C -0.094 4.094 27 C -0.122 4.122 28 C -0.080 4.080 29 N -0.468 5.468 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.345 0.655 34 H 0.054 0.946 35 H 0.082 0.918 36 H 0.038 0.962 37 H 0.027 0.973 38 H 0.262 0.738 39 H 0.140 0.860 40 H 0.134 0.866 41 H 0.130 0.870 42 H 0.133 0.867 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.377 -0.988 -31.580 31.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.067 3.933 3 H 0.098 0.902 4 N -0.314 5.314 5 C -0.064 4.064 6 C -0.011 4.011 7 H 0.117 0.883 8 C -0.064 4.064 9 N -0.152 5.152 10 C -0.006 4.006 11 C -0.564 4.564 12 H 0.075 0.925 13 C -0.140 4.140 14 N -0.530 5.530 15 Si 0.720 3.280 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.198 1.198 19 C -0.102 4.102 20 N -0.059 5.059 21 O 0.024 5.976 22 C -0.002 4.002 23 C -0.030 4.030 24 C -0.083 4.083 25 C -0.141 4.141 26 C -0.112 4.112 27 C -0.140 4.140 28 C -0.100 4.100 29 N -0.201 5.201 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.163 0.837 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.056 0.944 37 H 0.046 0.954 38 H 0.072 0.928 39 H 0.157 0.843 40 H 0.152 0.848 41 H 0.148 0.852 42 H 0.151 0.849 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.262 -2.431 -30.040 30.139 hybrid contribution 1.599 0.340 0.459 1.698 sum 1.861 -2.090 -29.581 29.713 Atomic orbital electron populations 1.21807 0.92211 1.03316 1.02265 1.19820 0.96576 0.94931 0.81979 0.90240 1.60649 1.34125 1.33402 1.03214 1.22205 1.02211 0.93501 0.88504 1.19197 0.93385 0.92196 0.96346 0.88336 1.28826 0.93300 0.93149 0.91086 1.81006 1.11458 1.11736 1.11046 1.19173 0.98417 0.93065 0.89993 1.21136 1.41260 0.96198 0.97838 0.92486 1.24958 0.95541 0.94858 0.98659 1.69941 1.47582 1.08082 1.27397 0.86581 0.79475 0.80017 0.81960 1.20487 1.21135 1.19842 1.25842 0.99544 0.87225 0.97565 1.74734 1.15727 1.17772 0.97658 1.85446 1.56221 1.34325 1.21569 1.26363 0.96904 0.80815 0.96130 1.17247 1.03179 0.95271 0.87343 1.21282 0.95279 0.96348 0.95410 1.21167 0.99462 0.99334 0.94158 1.21457 0.97407 0.92492 0.99877 1.21120 0.99309 0.98192 0.95413 1.21325 0.96603 0.97794 0.94232 1.72084 1.16710 1.29346 1.01955 0.90708 0.92310 0.91461 0.83654 0.92754 0.89910 0.94397 0.95431 0.92794 0.84262 0.84843 0.85250 0.84893 0.84593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.40 37.16 0.35 -1.29 16 2 C 0.18 2.23 3.16 -68.86 -0.22 2.02 16 3 H 0.08 0.92 7.80 -51.93 -0.40 0.51 16 4 N -0.68 -9.57 6.00 -107.95 -0.65 -10.21 16 5 C 0.07 0.96 4.85 -3.82 -0.02 0.94 16 6 C 0.01 0.20 2.35 -93.40 -0.22 -0.02 16 7 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 8 C 0.25 5.41 13.67 -20.75 -0.28 5.13 16 9 N -0.48 -11.09 18.54 42.17 0.78 -10.30 16 10 C 0.03 0.74 4.42 -27.88 -0.12 0.62 16 11 C -0.53 -14.08 8.60 -34.44 -0.30 -14.38 16 12 H 0.06 1.53 7.59 -52.49 -0.40 1.13 16 13 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 14 N -0.89 -25.55 13.29 55.43 0.74 -24.81 16 15 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 18 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 19 C 0.17 2.27 6.69 -156.55 -1.05 1.22 16 20 N -0.36 -4.97 12.14 31.18 0.38 -4.59 16 21 O 0.09 1.05 11.13 16.69 0.19 1.23 16 22 C 0.22 2.35 8.01 -13.85 -0.11 2.24 16 23 C -0.03 -0.23 5.87 -104.98 -0.62 -0.85 16 24 C -0.06 -0.45 9.71 -39.18 -0.38 -0.83 16 25 C -0.12 -0.63 10.03 -39.64 -0.40 -1.02 16 26 C -0.09 -0.41 10.04 -39.49 -0.40 -0.80 16 27 C -0.12 -0.58 10.03 -39.64 -0.40 -0.97 16 28 C -0.08 -0.51 9.73 -39.19 -0.38 -0.89 16 29 N -0.47 -5.79 11.26 -10.17 -0.11 -5.90 16 30 H 0.07 0.87 7.45 -51.93 -0.39 0.48 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.34 4.77 8.35 -39.29 -0.33 4.44 16 34 H 0.05 0.72 8.06 -51.93 -0.42 0.30 16 35 H 0.08 1.22 7.43 -51.93 -0.39 0.84 16 36 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.14 0.99 7.88 -52.49 -0.41 0.58 16 40 H 0.13 0.40 8.06 -52.49 -0.42 -0.02 16 41 H 0.13 0.26 8.06 -52.48 -0.42 -0.16 16 42 H 0.13 0.33 8.06 -52.48 -0.42 -0.09 16 43 H 0.14 0.71 7.95 -52.48 -0.42 0.29 16 LS Contribution 380.94 15.07 5.74 5.74 Total: -1.00 -32.44 380.94 -8.27 -40.70 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -5.67 Total: -1.03 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -4.64 Total: -7.27 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: 1.14 Total: -55.82 kcal Atomic # 8 Polarization: 1.05 SS G_CDS: 0.19 Total: 1.23 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.44 -8.27 -40.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516686090.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.765 kcal (2) G-P(sol) polarization free energy of solvation -32.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds