Wall clock time and date at job start Tue Mar 31 2020 15:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47244 * 2 1 4 4 N 1.46904 * 109.46849 * 119.99584 * 2 1 3 5 5 C 1.46897 * 111.00121 * 274.99975 * 4 2 1 6 6 C 1.53004 * 109.46835 * 180.02562 * 5 4 2 7 7 H 1.08999 * 109.46886 * 55.00236 * 6 5 4 8 8 C 1.47193 * 109.47071 * 294.99717 * 6 5 4 9 9 N 4.90937 * 82.27731 * 119.13400 * 2 1 3 10 10 C 1.53009 * 109.46789 * 174.99767 * 6 5 4 11 11 C 1.50704 * 109.46725 * 184.99943 * 10 6 5 12 12 H 1.07995 * 120.00137 * 359.97438 * 11 10 6 13 13 C 1.37877 * 119.99799 * 180.02562 * 11 10 6 14 14 N 1.31523 * 119.99766 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00170 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47072 * 89.99575 * 15 13 11 17 17 H 1.48494 * 109.47047 * 209.99846 * 15 13 11 18 18 H 1.48502 * 109.46747 * 329.99998 * 15 13 11 19 19 C 1.50698 * 109.47068 * 239.99661 * 2 1 3 20 20 N 1.30038 * 126.18929 * 284.97391 * 19 2 1 21 21 O 1.21289 * 110.48068 * 180.02562 * 20 19 2 22 22 C 1.34187 * 109.69580 * 0.02562 * 21 20 19 23 23 C 1.47821 * 126.67244 * 179.97438 * 22 21 20 24 24 C 1.39586 * 120.14184 * 180.02562 * 23 22 21 25 25 C 1.37956 * 119.84871 * 180.02562 * 24 23 22 26 26 C 1.38365 * 120.14522 * 359.97438 * 25 24 23 27 27 C 1.38349 * 120.29321 * 0.02562 * 26 25 24 28 28 C 1.37953 * 120.14975 * 0.02562 * 27 26 25 29 29 N 1.32123 * 106.65516 * 0.22785 * 22 21 20 30 30 H 1.09000 * 109.47223 * 300.00102 * 1 2 3 31 31 H 1.08997 * 109.47171 * 59.99732 * 1 2 3 32 32 H 1.08996 * 109.47478 * 180.02562 * 1 2 3 33 33 H 1.00904 * 110.99724 * 151.04894 * 4 2 1 34 34 H 1.09001 * 109.47241 * 300.00263 * 5 4 2 35 35 H 1.09001 * 109.47409 * 60.00577 * 5 4 2 36 36 H 1.08998 * 109.47143 * 304.99898 * 10 6 5 37 37 H 1.09002 * 109.46496 * 65.00208 * 10 6 5 38 38 H 0.96998 * 119.99399 * 180.02562 * 14 13 11 39 39 H 1.07993 * 120.07630 * 0.02562 * 24 23 22 40 40 H 1.07998 * 119.92711 * 180.25412 * 25 24 23 41 41 H 1.08003 * 119.85108 * 180.02562 * 26 25 24 42 42 H 1.08004 * 119.92828 * 179.97438 * 27 26 25 43 43 H 1.08005 * 120.07863 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0824 0.2227 2.3469 6 6 2.5961 -0.5328 3.5742 7 1 3.5519 -1.0010 3.3389 8 6 1.6227 -1.5690 3.9555 9 7 0.8703 -2.3685 4.2494 10 6 2.7800 0.4462 4.7356 11 6 3.4010 -0.2731 5.9053 12 1 3.6401 -1.3234 5.8283 13 6 3.6628 0.4096 7.0743 14 7 3.3712 1.6887 7.1682 15 14 4.4332 -0.4817 8.5239 16 1 5.9125 -0.3910 8.4314 17 1 3.9769 0.1460 9.7900 18 1 4.0224 -1.9086 8.5026 19 6 2.0323 -0.7105 -1.2304 20 7 2.0326 -1.9957 -1.4286 21 8 2.5022 -2.2573 -2.5158 22 6 2.8603 -1.1238 -3.1384 23 6 3.4707 -1.0083 -4.4798 24 6 3.7911 0.2475 -4.9982 25 6 4.3601 0.3484 -6.2509 26 6 4.6137 -0.7917 -6.9927 27 6 4.2986 -2.0394 -6.4846 28 6 3.7283 -2.1542 -5.2338 29 7 2.5662 -0.1315 -2.3172 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 2.9173 -1.1204 1.0289 34 1 2.7588 1.0463 2.1182 35 1 1.0870 0.6164 2.5526 36 1 3.4317 1.2622 4.4233 37 1 1.8101 0.8478 5.0292 38 1 3.5558 2.1690 7.9905 39 1 3.5939 1.1381 -4.4201 40 1 4.6122 1.3191 -6.6516 41 1 5.0597 -0.7073 -7.9727 42 1 4.4988 -2.9254 -7.0689 43 1 3.4824 -3.1288 -4.8384 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000516686090.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:54 Heat of formation + Delta-G solvation = 92.373520 kcal Electronic energy + Delta-G solvation = -25505.783142 eV Core-core repulsion = 21746.132695 eV Total energy + Delta-G solvation = -3759.650447 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -46.67975 -40.06667 -39.27533 -37.78429 -36.42796 -35.53313 -34.45444 -33.43433 -31.95352 -31.30366 -30.83768 -28.16556 -26.18910 -25.66505 -24.47168 -23.55633 -23.34462 -23.11563 -21.35488 -19.28444 -19.24950 -18.59530 -18.38349 -17.78852 -16.97327 -16.61430 -16.50251 -16.04110 -15.79652 -15.54459 -15.07084 -14.85309 -14.56833 -14.38347 -14.26723 -14.06380 -13.85805 -13.65347 -13.64555 -13.50167 -13.14041 -13.03868 -12.90855 -12.70092 -12.55498 -12.48883 -12.41610 -12.33859 -12.11303 -12.01140 -11.91823 -11.55382 -11.39445 -11.16161 -10.55689 -9.95389 -9.70842 -9.58083 -8.20640 -6.28494 -0.59669 0.42138 0.57195 1.23193 1.38870 1.41040 1.50266 1.62786 2.03401 2.11314 2.29279 2.40935 2.79813 2.81550 3.12495 3.15212 3.31628 3.71787 3.96230 3.98128 4.00952 4.12635 4.24120 4.28294 4.34642 4.43124 4.48085 4.53710 4.61798 4.68222 4.75479 4.81262 4.84457 4.88583 4.98369 5.09303 5.18508 5.38527 5.45600 5.46068 5.53573 5.60461 5.75806 5.81384 5.93039 6.17047 6.20427 6.81654 6.91165 7.04766 7.39826 8.90118 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.020684 B = 0.002028 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.397589 B =13801.888627 C =14143.735183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.180 3.820 3 H 0.094 0.906 4 N -0.689 5.689 5 C 0.077 3.923 6 C 0.021 3.979 7 H 0.116 0.884 8 C 0.264 3.736 9 N -0.513 5.513 10 C 0.039 3.961 11 C -0.540 4.540 12 H 0.052 0.948 13 C 0.011 3.989 14 N -0.921 5.921 15 Si 0.948 3.052 16 H -0.266 1.266 17 H -0.284 1.284 18 H -0.278 1.278 19 C 0.168 3.832 20 N -0.383 5.383 21 O 0.082 5.918 22 C 0.227 3.773 23 C -0.057 4.057 24 C -0.074 4.074 25 C -0.125 4.125 26 C -0.085 4.085 27 C -0.123 4.123 28 C -0.084 4.084 29 N -0.486 5.486 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.048 0.952 33 H 0.346 0.654 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.038 0.962 37 H 0.005 0.995 38 H 0.264 0.736 39 H 0.132 0.868 40 H 0.156 0.844 41 H 0.160 0.840 42 H 0.159 0.841 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.719 -0.896 -33.936 34.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.070 3.930 3 H 0.112 0.888 4 N -0.323 5.323 5 C -0.052 4.052 6 C -0.001 4.001 7 H 0.134 0.866 8 C -0.052 4.052 9 N -0.190 5.190 10 C 0.000 4.000 11 C -0.578 4.578 12 H 0.070 0.930 13 C -0.188 4.188 14 N -0.561 5.561 15 Si 0.774 3.226 16 H -0.192 1.192 17 H -0.209 1.209 18 H -0.203 1.203 19 C -0.106 4.106 20 N -0.089 5.089 21 O 0.022 5.978 22 C 0.010 3.990 23 C -0.059 4.059 24 C -0.093 4.093 25 C -0.143 4.143 26 C -0.103 4.103 27 C -0.140 4.140 28 C -0.104 4.104 29 N -0.219 5.219 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.067 0.933 33 H 0.165 0.835 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.057 0.943 37 H 0.023 0.977 38 H 0.073 0.927 39 H 0.150 0.850 40 H 0.173 0.827 41 H 0.177 0.823 42 H 0.177 0.823 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.615 -2.341 -32.420 32.544 hybrid contribution 1.231 0.309 1.021 1.628 sum 2.846 -2.032 -31.399 31.593 Atomic orbital electron populations 1.21770 0.91887 1.02336 1.03119 1.19850 0.96737 0.95306 0.81144 0.88844 1.60575 1.34375 1.33632 1.03675 1.22032 1.02607 0.93406 0.87171 1.19166 0.93791 0.90847 0.96291 0.86643 1.29373 0.92898 0.92873 0.90087 1.81003 1.12823 1.13057 1.12165 1.18989 0.96726 0.93650 0.90599 1.21538 1.40902 0.96190 0.99161 0.92987 1.25702 0.96270 0.95586 1.01207 1.70028 1.48767 1.09200 1.28121 0.85694 0.79296 0.78474 0.79098 1.19150 1.20914 1.20300 1.25946 0.99504 0.87174 0.97937 1.74705 1.17148 1.18382 0.98691 1.85402 1.56474 1.34671 1.21285 1.26933 0.95343 0.80078 0.96609 1.17442 1.05202 0.96599 0.86662 1.21365 0.95906 0.95670 0.96397 1.21469 0.98662 1.00884 0.93277 1.21881 0.95794 0.91879 1.00761 1.21475 0.98253 0.99555 0.94743 1.21517 0.96574 0.97463 0.94868 1.72081 1.17866 1.29761 1.02177 0.90362 0.90918 0.93294 0.83498 0.90592 0.89848 0.94344 0.97687 0.92685 0.84969 0.82661 0.82259 0.82337 0.84049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 9.40 71.98 0.68 -2.42 16 2 C 0.18 4.40 3.16 44.17 0.14 4.54 16 3 H 0.09 2.02 7.80 -2.39 -0.02 2.01 16 4 N -0.69 -18.83 6.00 -495.44 -2.97 -21.80 16 5 C 0.08 2.19 4.85 86.31 0.42 2.61 16 6 C 0.02 0.76 2.35 -12.60 -0.03 0.73 16 7 H 0.12 3.85 8.14 -2.39 -0.02 3.83 16 8 C 0.26 11.23 13.67 89.43 1.22 12.45 16 9 N -0.51 -24.04 18.54 20.01 0.37 -23.67 16 10 C 0.04 1.80 4.42 29.85 0.13 1.93 16 11 C -0.54 -28.82 8.60 25.60 0.22 -28.60 16 12 H 0.05 2.77 7.59 -2.91 -0.02 2.75 16 13 C 0.01 0.63 5.46 84.65 0.46 1.09 16 14 N -0.92 -52.91 13.29 21.45 0.28 -52.62 16 15 Si 0.95 43.89 29.54 68.60 2.03 45.92 16 16 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 17 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 18 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 19 C 0.17 4.43 6.69 138.52 0.93 5.36 16 20 N -0.38 -10.88 12.14 -58.65 -0.71 -11.59 16 21 O 0.08 2.03 11.13 69.78 0.78 2.80 16 22 C 0.23 4.99 8.01 87.31 0.70 5.69 16 23 C -0.06 -0.91 5.87 -20.09 -0.12 -1.03 16 24 C -0.07 -0.98 9.71 22.53 0.22 -0.76 16 25 C -0.13 -0.98 10.03 22.23 0.22 -0.76 16 26 C -0.08 -0.45 10.04 22.33 0.22 -0.23 16 27 C -0.12 -0.82 10.03 22.23 0.22 -0.60 16 28 C -0.08 -0.97 9.73 22.53 0.22 -0.75 16 29 N -0.49 -12.03 11.26 -302.76 -3.41 -15.44 16 30 H 0.08 1.75 7.45 -2.39 -0.02 1.73 16 31 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.35 9.32 8.35 -89.69 -0.75 8.57 16 34 H 0.08 1.86 8.06 -2.39 -0.02 1.84 16 35 H 0.08 2.37 7.43 -2.39 -0.02 2.36 16 36 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 38 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 39 H 0.13 1.87 7.88 -2.91 -0.02 1.84 16 40 H 0.16 0.48 8.06 -2.91 -0.02 0.46 16 41 H 0.16 -0.08 8.06 -2.91 -0.02 -0.10 16 42 H 0.16 0.22 8.06 -2.91 -0.02 0.20 16 43 H 0.14 1.36 7.95 -2.91 -0.02 1.34 16 Total: -1.00 -69.97 380.94 2.52 -67.46 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: 0.29 Total: 9.69 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: 5.86 Total: -0.74 kcal Atomic # 7 Polarization: -118.70 SS G_CDS: -6.44 Total: -125.13 kcal Atomic # 8 Polarization: 2.03 SS G_CDS: 0.78 Total: 2.80 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -69.97 2.52 -67.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516686090.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.831 kcal (2) G-P(sol) polarization free energy of solvation -69.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds