Wall clock time and date at job start Tue Mar 31 2020 14:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 110.20190 * 2 1 4 4 C 1.54390 * 110.23731 * 238.10191 * 2 1 3 5 5 C 1.54540 * 101.76900 * 266.69646 * 4 2 1 6 6 H 1.08996 * 110.47455 * 93.65016 * 5 4 2 7 7 N 1.46503 * 110.47438 * 216.13899 * 5 4 2 8 8 C 1.34768 * 119.99738 * 203.18082 * 7 5 4 9 9 O 1.21589 * 120.00534 * 359.97438 * 8 7 5 10 10 N 1.34779 * 119.99822 * 179.71945 * 8 7 5 11 11 C 1.39963 * 119.99937 * 175.12441 * 10 8 7 12 12 C 1.39285 * 119.94747 * 325.53079 * 11 10 8 13 13 C 1.38491 * 120.43003 * 179.72149 * 12 11 10 14 14 C 1.37689 * 120.31801 * 0.54680 * 13 12 11 15 15 C 1.40742 * 119.88422 * 359.72508 * 14 13 12 16 16 C 1.41403 * 120.21001 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00189 * 205.15883 * 16 15 14 18 18 C 1.39930 * 119.99719 * 25.16992 * 16 15 14 19 19 N 1.30823 * 120.00672 * 16.78216 * 18 16 15 20 20 Si 1.86807 * 119.99759 * 196.78302 * 18 16 15 21 21 H 1.48506 * 109.47087 * 59.99454 * 20 18 16 22 22 H 1.48500 * 109.47191 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.47017 * 299.99946 * 20 18 16 24 24 C 1.38231 * 119.94435 * 145.79335 * 11 10 8 25 25 C 1.51569 * 104.35888 * 334.89231 * 5 4 2 26 26 N 1.30753 * 141.62427 * 196.82198 * 25 5 4 27 27 C 1.34006 * 109.38814 * 179.56361 * 26 25 5 28 28 C 1.34562 * 108.03026 * 359.97438 * 27 26 25 29 29 N 1.35050 * 109.81282 * 16.40838 * 25 5 4 30 30 H 1.08998 * 109.46861 * 181.89616 * 1 2 3 31 31 H 1.09002 * 109.47440 * 301.89907 * 1 2 3 32 32 H 1.09004 * 109.46938 * 61.90130 * 1 2 3 33 33 H 1.09000 * 110.96692 * 148.57430 * 4 2 1 34 34 H 1.09000 * 110.96486 * 24.81340 * 4 2 1 35 35 H 0.97000 * 119.99968 * 23.17894 * 7 5 4 36 36 H 0.96994 * 120.00451 * 355.13509 * 10 8 7 37 37 H 1.07997 * 119.78841 * 359.97438 * 12 11 10 38 38 H 1.08002 * 119.84327 * 180.29573 * 13 12 11 39 39 H 1.08000 * 120.05599 * 179.70457 * 14 13 12 40 40 H 0.97002 * 120.00662 * 180.02562 * 19 18 16 41 41 H 1.07998 * 120.16223 * 0.03018 * 24 11 10 42 42 H 1.07993 * 125.98243 * 179.97438 * 27 26 25 43 43 H 1.08001 * 126.57991 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9065 1.0230 0.0000 4 6 2.0641 -0.7654 -1.2298 5 6 2.2549 -2.1881 -0.6572 6 1 1.3688 -2.7953 -0.8416 7 7 3.4395 -2.8213 -1.2421 8 6 3.5430 -4.1648 -1.2657 9 8 2.6536 -4.8514 -0.8011 10 7 4.6302 -4.7474 -1.8089 11 6 4.7863 -6.1368 -1.7426 12 6 4.3329 -6.8349 -0.6259 13 6 4.4770 -8.2103 -0.5524 14 6 5.0809 -8.9017 -1.5786 15 6 5.5491 -8.2090 -2.7107 16 6 6.1699 -8.9122 -3.7688 17 1 6.8700 -8.4055 -4.4165 18 6 5.8768 -10.2646 -3.9769 19 7 4.8137 -10.7954 -3.4296 20 14 7.0039 -11.3122 -5.0361 21 1 8.3661 -11.3270 -4.4450 22 1 6.4767 -12.6991 -5.0983 23 1 7.0651 -10.7434 -6.4065 24 6 5.3952 -6.8131 -2.7831 25 6 2.4494 -1.9716 0.8303 26 7 2.8863 -2.5741 1.9053 27 6 2.7716 -1.7493 2.9552 28 6 2.2446 -0.5906 2.5190 29 7 2.0384 -0.7308 1.1698 30 1 -0.3633 -1.0271 0.0340 31 1 -0.3634 0.5430 0.8725 32 1 -0.3633 0.4840 -0.9066 33 1 3.0139 -0.3495 -1.5659 34 1 1.3321 -0.7650 -2.0375 35 1 4.1493 -2.2736 -1.6124 36 1 5.3046 -4.2040 -2.2456 37 1 3.8621 -6.3007 0.1861 38 1 4.1176 -8.7427 0.3158 39 1 5.1954 -9.9738 -1.5147 40 1 4.6108 -11.7329 -3.5735 41 1 5.7514 -6.2721 -3.6473 42 1 3.0528 -1.9751 3.9732 43 1 2.0254 0.2821 3.1164 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000556669555.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:13 Heat of formation + Delta-G solvation = 75.509062 kcal Electronic energy + Delta-G solvation = -26614.197238 eV Core-core repulsion = 22853.815493 eV Total energy + Delta-G solvation = -3760.381745 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.64644 -39.83723 -37.69229 -36.95896 -34.54572 -34.11416 -32.95080 -30.95096 -30.21538 -29.71143 -28.40633 -27.64144 -25.14595 -25.00011 -22.29497 -21.89159 -20.87492 -20.77965 -20.11561 -19.85623 -18.08617 -17.58470 -16.83504 -16.41400 -15.51334 -15.18215 -15.07777 -14.82294 -14.47811 -14.36598 -14.20326 -14.00392 -13.80569 -13.54591 -13.20757 -12.88720 -12.80704 -12.62058 -12.45881 -12.12663 -11.90745 -11.56361 -11.47485 -11.12531 -11.07282 -10.80439 -10.44467 -10.14265 -9.82662 -9.71834 -9.50789 -9.46294 -9.15981 -9.11828 -8.84792 -8.46839 -7.34470 -6.78931 -6.62032 -4.26242 1.88014 2.41668 2.78922 2.90880 2.98647 3.12313 3.14839 3.25014 3.31795 3.58507 3.73727 4.00491 4.14374 4.19485 4.21474 4.51990 4.63851 4.76132 4.77013 4.91705 5.04748 5.12424 5.24035 5.41935 5.46261 5.53936 5.60553 5.79685 6.18207 6.38967 6.42048 6.70339 6.76808 6.81194 6.91267 6.95555 7.06349 7.13870 7.33963 7.44803 7.73664 7.92273 8.12925 8.15159 8.21334 8.35110 8.50335 8.72967 8.97993 9.01984 9.13245 10.30591 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.029794 B = 0.002384 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.568288 B =11742.052113 C =12195.599177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.133 3.867 3 H 0.099 0.901 4 C -0.133 4.133 5 C 0.249 3.751 6 H 0.119 0.881 7 N -0.738 5.738 8 C 0.704 3.296 9 O -0.557 6.557 10 N -0.679 5.679 11 C 0.171 3.829 12 C -0.221 4.221 13 C -0.095 4.095 14 C -0.169 4.169 15 C 0.122 3.878 16 C -0.467 4.467 17 H 0.075 0.925 18 C 0.076 3.924 19 N -0.796 5.796 20 Si 0.907 3.093 21 H -0.265 1.265 22 H -0.279 1.279 23 H -0.267 1.267 24 C -0.245 4.245 25 C 0.182 3.818 26 N -0.457 5.457 27 C -0.024 4.024 28 C -0.040 4.040 29 N -0.482 5.482 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.112 0.888 35 H 0.395 0.605 36 H 0.394 0.606 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.118 0.882 40 H 0.280 0.720 41 H 0.093 0.907 42 H 0.173 0.827 43 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.534 23.300 4.006 24.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.031 3.969 3 H 0.117 0.883 4 C -0.171 4.171 5 C 0.140 3.860 6 H 0.137 0.863 7 N -0.395 5.395 8 C 0.405 3.595 9 O -0.432 6.432 10 N -0.325 5.325 11 C 0.079 3.921 12 C -0.242 4.242 13 C -0.114 4.114 14 C -0.189 4.189 15 C 0.119 3.881 16 C -0.497 4.497 17 H 0.093 0.907 18 C -0.141 4.141 19 N -0.421 5.421 20 Si 0.732 3.268 21 H -0.189 1.189 22 H -0.204 1.204 23 H -0.192 1.192 24 C -0.267 4.267 25 C -0.083 4.083 26 N -0.175 5.175 27 C -0.172 4.172 28 C -0.171 4.171 29 N -0.168 5.168 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.113 0.887 34 H 0.130 0.870 35 H 0.229 0.771 36 H 0.228 0.772 37 H 0.123 0.877 38 H 0.109 0.891 39 H 0.136 0.864 40 H 0.091 0.909 41 H 0.112 0.888 42 H 0.190 0.810 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -6.288 21.866 4.497 23.192 hybrid contribution 0.752 0.975 -0.629 1.383 sum -5.536 22.841 3.869 23.819 Atomic orbital electron populations 1.22204 0.92717 1.03881 1.03380 1.21930 0.95670 0.96855 0.82477 0.88299 1.23129 1.03938 0.93014 0.97036 1.19615 0.90582 0.93353 0.82494 0.86340 1.44972 1.22777 1.05606 1.66156 1.15873 0.83031 0.81320 0.79272 1.90972 1.39780 1.61642 1.50762 1.42560 1.22514 1.07328 1.60104 1.17209 1.00811 0.79183 0.94941 1.20395 1.11237 0.94210 0.98390 1.20594 0.99475 0.93392 0.97943 1.21358 1.04161 0.99970 0.93428 1.17337 0.89019 0.89924 0.91804 1.19442 1.23262 0.94326 1.12652 0.90654 1.25867 0.94291 0.98420 0.95510 1.69831 1.21081 1.14268 1.36960 0.86398 0.81237 0.78607 0.80568 1.18919 1.20445 1.19166 1.20660 1.13341 0.95087 0.97616 1.24783 1.02513 0.83562 0.97423 1.69902 1.19448 1.31255 0.96886 1.22419 1.05687 0.90441 0.98692 1.22321 1.10068 1.02481 0.82261 1.46651 1.47426 1.15512 1.07175 0.91169 0.91652 0.90000 0.88661 0.87005 0.77082 0.77209 0.87732 0.89112 0.86398 0.90944 0.88842 0.81018 0.81296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.84 9.46 37.16 0.35 -0.49 16 2 C 0.13 0.83 4.14 -66.93 -0.28 0.55 16 3 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 4 C -0.13 -0.78 6.38 -25.19 -0.16 -0.94 16 5 C 0.25 2.88 3.24 -67.84 -0.22 2.66 16 6 H 0.12 1.56 7.61 -51.93 -0.40 1.17 16 7 N -0.74 -9.51 5.15 -58.59 -0.30 -9.81 16 8 C 0.70 13.11 8.29 -86.92 -0.72 12.39 16 9 O -0.56 -12.99 13.77 5.29 0.07 -12.92 16 10 N -0.68 -12.72 5.34 -14.27 -0.08 -12.80 16 11 C 0.17 4.05 6.25 -83.76 -0.52 3.52 16 12 C -0.22 -5.63 8.66 -39.10 -0.34 -5.97 16 13 C -0.09 -2.45 10.02 -39.69 -0.40 -2.84 16 14 C -0.17 -4.62 8.69 -38.84 -0.34 -4.96 16 15 C 0.12 3.34 5.57 -106.85 -0.59 2.75 16 16 C -0.47 -12.58 9.05 -37.74 -0.34 -12.92 16 17 H 0.08 1.93 7.90 -52.49 -0.41 1.51 16 18 C 0.08 1.96 5.16 -17.35 -0.09 1.87 16 19 N -0.80 -21.26 10.94 55.55 0.61 -20.65 16 20 Si 0.91 19.02 29.59 -169.99 -5.03 13.99 16 21 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 22 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 23 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 24 C -0.24 -6.10 9.70 -38.69 -0.38 -6.48 16 25 C 0.18 2.56 8.23 -154.77 -1.27 1.28 16 26 N -0.46 -7.84 11.25 -10.54 -0.12 -7.95 16 27 C -0.02 -0.31 11.86 -17.90 -0.21 -0.53 16 28 C -0.04 -0.41 12.04 -16.45 -0.20 -0.61 16 29 N -0.48 -5.02 3.25 -105.24 -0.34 -5.37 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.09 0.42 7.81 -51.93 -0.41 0.01 16 34 H 0.11 0.41 7.89 -51.93 -0.41 0.00 16 35 H 0.40 3.68 8.42 -40.82 -0.34 3.33 16 36 H 0.39 5.77 8.83 -40.82 -0.36 5.41 16 37 H 0.10 2.74 6.48 -52.49 -0.34 2.40 16 38 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 39 H 0.12 3.29 6.17 -52.49 -0.32 2.96 16 40 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 41 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 42 H 0.17 1.82 8.06 -52.49 -0.42 1.40 16 43 H 0.17 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 361.54 15.07 5.45 5.45 Total: -1.00 -36.72 361.54 -10.96 -47.68 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -5.51 Total: 13.09 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -5.71 Total: -10.72 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: -0.23 Total: -56.58 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.07 Total: -12.92 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.72 -10.96 -47.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556669555.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.189 kcal (2) G-P(sol) polarization free energy of solvation -36.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds