Wall clock time and date at job start Tue Mar 31 2020 14:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 110.20190 * 2 1 4 4 C 1.54390 * 110.23731 * 238.10191 * 2 1 3 5 5 C 1.54540 * 101.76900 * 266.69646 * 4 2 1 6 6 H 1.08996 * 110.47455 * 93.65016 * 5 4 2 7 7 N 1.46503 * 110.47438 * 216.13899 * 5 4 2 8 8 C 1.34768 * 119.99738 * 203.18082 * 7 5 4 9 9 O 1.21589 * 120.00534 * 359.97438 * 8 7 5 10 10 N 1.34779 * 119.99822 * 179.71945 * 8 7 5 11 11 C 1.39963 * 119.99937 * 175.12441 * 10 8 7 12 12 C 1.39285 * 119.94747 * 325.53079 * 11 10 8 13 13 C 1.38491 * 120.43003 * 179.72149 * 12 11 10 14 14 C 1.37689 * 120.31801 * 0.54680 * 13 12 11 15 15 C 1.40742 * 119.88422 * 359.72508 * 14 13 12 16 16 C 1.41403 * 120.21001 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00189 * 205.15883 * 16 15 14 18 18 C 1.39930 * 119.99719 * 25.16992 * 16 15 14 19 19 N 1.30823 * 120.00672 * 16.78216 * 18 16 15 20 20 Si 1.86807 * 119.99759 * 196.78302 * 18 16 15 21 21 H 1.48506 * 109.47087 * 59.99454 * 20 18 16 22 22 H 1.48500 * 109.47191 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.47017 * 299.99946 * 20 18 16 24 24 C 1.38231 * 119.94435 * 145.79335 * 11 10 8 25 25 C 1.51569 * 104.35888 * 334.89231 * 5 4 2 26 26 N 1.30753 * 141.62427 * 196.82198 * 25 5 4 27 27 C 1.34006 * 109.38814 * 179.56361 * 26 25 5 28 28 C 1.34562 * 108.03026 * 359.97438 * 27 26 25 29 29 N 1.35050 * 109.81282 * 16.40838 * 25 5 4 30 30 H 1.08998 * 109.46861 * 181.89616 * 1 2 3 31 31 H 1.09002 * 109.47440 * 301.89907 * 1 2 3 32 32 H 1.09004 * 109.46938 * 61.90130 * 1 2 3 33 33 H 1.09000 * 110.96692 * 148.57430 * 4 2 1 34 34 H 1.09000 * 110.96486 * 24.81340 * 4 2 1 35 35 H 0.97000 * 119.99968 * 23.17894 * 7 5 4 36 36 H 0.96994 * 120.00451 * 355.13509 * 10 8 7 37 37 H 1.07997 * 119.78841 * 359.97438 * 12 11 10 38 38 H 1.08002 * 119.84327 * 180.29573 * 13 12 11 39 39 H 1.08000 * 120.05599 * 179.70457 * 14 13 12 40 40 H 0.97002 * 120.00662 * 180.02562 * 19 18 16 41 41 H 1.07998 * 120.16223 * 0.03018 * 24 11 10 42 42 H 1.07993 * 125.98243 * 179.97438 * 27 26 25 43 43 H 1.08001 * 126.57991 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9065 1.0230 0.0000 4 6 2.0641 -0.7654 -1.2298 5 6 2.2549 -2.1881 -0.6572 6 1 1.3688 -2.7953 -0.8416 7 7 3.4395 -2.8213 -1.2421 8 6 3.5430 -4.1648 -1.2657 9 8 2.6536 -4.8514 -0.8011 10 7 4.6302 -4.7474 -1.8089 11 6 4.7863 -6.1368 -1.7426 12 6 4.3329 -6.8349 -0.6259 13 6 4.4770 -8.2103 -0.5524 14 6 5.0809 -8.9017 -1.5786 15 6 5.5491 -8.2090 -2.7107 16 6 6.1699 -8.9122 -3.7688 17 1 6.8700 -8.4055 -4.4165 18 6 5.8768 -10.2646 -3.9769 19 7 4.8137 -10.7954 -3.4296 20 14 7.0039 -11.3122 -5.0361 21 1 8.3661 -11.3270 -4.4450 22 1 6.4767 -12.6991 -5.0983 23 1 7.0651 -10.7434 -6.4065 24 6 5.3952 -6.8131 -2.7831 25 6 2.4494 -1.9716 0.8303 26 7 2.8863 -2.5741 1.9053 27 6 2.7716 -1.7493 2.9552 28 6 2.2446 -0.5906 2.5190 29 7 2.0384 -0.7308 1.1698 30 1 -0.3633 -1.0271 0.0340 31 1 -0.3634 0.5430 0.8725 32 1 -0.3633 0.4840 -0.9066 33 1 3.0139 -0.3495 -1.5659 34 1 1.3321 -0.7650 -2.0375 35 1 4.1493 -2.2736 -1.6124 36 1 5.3046 -4.2040 -2.2456 37 1 3.8621 -6.3007 0.1861 38 1 4.1176 -8.7427 0.3158 39 1 5.1954 -9.9738 -1.5147 40 1 4.6108 -11.7329 -3.5735 41 1 5.7514 -6.2721 -3.6473 42 1 3.0528 -1.9751 3.9732 43 1 2.0254 0.2821 3.1164 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000556669555.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:12 Heat of formation + Delta-G solvation = 50.715620 kcal Electronic energy + Delta-G solvation = -26615.272362 eV Core-core repulsion = 22853.815493 eV Total energy + Delta-G solvation = -3761.456869 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.49799 -41.36695 -39.24741 -38.09234 -36.15283 -35.47419 -34.78111 -31.93085 -31.73812 -31.02022 -29.76277 -28.78005 -27.13984 -25.80019 -23.52823 -22.98353 -22.78396 -21.80124 -21.64050 -20.81902 -19.52537 -19.39844 -17.85416 -17.31600 -17.20958 -16.67948 -16.66584 -16.11580 -15.81301 -15.63004 -15.33331 -14.89913 -14.85766 -14.79362 -14.61132 -14.20249 -14.06125 -13.77985 -13.51239 -13.30615 -13.06244 -12.93874 -12.88316 -12.68184 -12.37870 -12.26852 -12.04049 -11.93994 -11.43386 -11.23462 -11.05144 -10.83238 -10.72541 -10.59234 -10.35724 -9.39135 -9.36892 -8.71036 -8.55680 -6.32282 0.92896 1.00766 1.04246 1.41617 1.52519 1.55638 1.58934 1.86616 2.18129 2.22234 2.25469 2.79904 2.88969 3.25598 3.39936 3.61919 3.76001 3.78549 4.07430 4.13011 4.25308 4.43436 4.50150 4.64865 4.66690 4.72032 4.76186 4.85008 4.87429 5.04114 5.05783 5.14939 5.21045 5.22490 5.32863 5.35342 5.37322 5.76428 5.79609 5.87164 6.05364 6.11188 6.14704 6.20880 6.39336 6.70970 6.95698 7.00822 7.10385 7.23446 7.60293 8.38517 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.029794 B = 0.002384 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.568288 B =11742.052113 C =12195.599177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.128 3.872 3 H 0.134 0.866 4 C -0.116 4.116 5 C 0.240 3.760 6 H 0.094 0.906 7 N -0.713 5.713 8 C 0.702 3.298 9 O -0.609 6.609 10 N -0.671 5.671 11 C 0.185 3.815 12 C -0.239 4.239 13 C -0.098 4.098 14 C -0.196 4.196 15 C 0.096 3.904 16 C -0.495 4.495 17 H 0.084 0.916 18 C 0.032 3.968 19 N -0.829 5.829 20 Si 0.986 3.014 21 H -0.259 1.259 22 H -0.271 1.271 23 H -0.256 1.256 24 C -0.252 4.252 25 C 0.151 3.849 26 N -0.526 5.526 27 C -0.063 4.063 28 C -0.016 4.016 29 N -0.472 5.472 30 H 0.044 0.956 31 H 0.067 0.933 32 H 0.112 0.888 33 H 0.120 0.880 34 H 0.140 0.860 35 H 0.416 0.584 36 H 0.417 0.583 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.287 0.713 41 H 0.115 0.885 42 H 0.181 0.819 43 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.175 26.557 2.205 27.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.028 3.972 3 H 0.152 0.848 4 C -0.154 4.154 5 C 0.131 3.869 6 H 0.112 0.888 7 N -0.370 5.370 8 C 0.403 3.597 9 O -0.487 6.487 10 N -0.319 5.319 11 C 0.091 3.909 12 C -0.260 4.260 13 C -0.117 4.117 14 C -0.216 4.216 15 C 0.093 3.907 16 C -0.525 4.525 17 H 0.102 0.898 18 C -0.182 4.182 19 N -0.454 5.454 20 Si 0.807 3.193 21 H -0.184 1.184 22 H -0.196 1.196 23 H -0.180 1.180 24 C -0.274 4.274 25 C -0.114 4.114 26 N -0.245 5.245 27 C -0.210 4.210 28 C -0.149 4.149 29 N -0.157 5.157 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.131 0.869 33 H 0.139 0.861 34 H 0.158 0.842 35 H 0.254 0.746 36 H 0.254 0.746 37 H 0.110 0.890 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.098 0.902 41 H 0.133 0.867 42 H 0.198 0.802 43 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -5.921 25.237 2.671 26.060 hybrid contribution 0.542 0.075 0.015 0.547 sum -5.379 25.312 2.686 26.017 Atomic orbital electron populations 1.22222 0.91907 1.02661 1.05086 1.22370 0.96290 0.97964 0.80601 0.84797 1.23259 1.06161 0.88463 0.97477 1.19949 0.88672 0.96204 0.82058 0.88841 1.44728 1.23922 1.03500 1.64895 1.16090 0.82145 0.82940 0.78557 1.90942 1.41566 1.63436 1.52739 1.42335 1.23417 1.05723 1.60396 1.17176 0.98716 0.81418 0.93627 1.20410 1.12296 0.94217 0.99086 1.20763 0.99032 0.93817 0.98122 1.21286 1.06414 0.99441 0.94490 1.17741 0.89452 0.91340 0.92139 1.19779 1.23970 0.95640 1.13065 0.89837 1.26839 0.95416 0.99251 0.96729 1.69908 1.22551 1.15020 1.37971 0.85195 0.78708 0.76687 0.78727 1.18364 1.19580 1.18048 1.20834 1.13521 0.94514 0.98513 1.24987 1.03542 0.85057 0.97772 1.69758 1.21834 1.33944 0.98953 1.22776 1.07818 0.91607 0.98809 1.22866 1.07132 1.02442 0.82459 1.46950 1.46074 1.14689 1.07983 0.93708 0.91441 0.86946 0.86147 0.84163 0.74625 0.74618 0.88958 0.87893 0.87787 0.90205 0.86724 0.80187 0.77185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.14 9.46 71.98 0.68 -0.46 16 2 C 0.13 1.10 4.14 45.37 0.19 1.29 16 3 H 0.13 0.35 8.14 -2.39 -0.02 0.33 16 4 C -0.12 -0.93 6.38 31.59 0.20 -0.73 16 5 C 0.24 5.35 3.24 45.05 0.15 5.50 16 6 H 0.09 2.55 7.61 -2.39 -0.02 2.53 16 7 N -0.71 -17.68 5.15 -457.56 -2.36 -20.03 16 8 C 0.70 26.41 8.29 179.06 1.48 27.90 16 9 O -0.61 -29.61 13.77 -4.00 -0.06 -29.67 16 10 N -0.67 -24.98 5.34 -317.33 -1.69 -26.67 16 11 C 0.18 8.91 6.25 38.09 0.24 9.15 16 12 C -0.24 -12.67 8.66 22.58 0.20 -12.48 16 13 C -0.10 -5.31 10.02 22.20 0.22 -5.09 16 14 C -0.20 -11.20 8.69 22.75 0.20 -11.00 16 15 C 0.10 5.41 5.57 -21.31 -0.12 5.29 16 16 C -0.50 -26.99 9.05 23.46 0.21 -26.78 16 17 H 0.08 4.26 7.90 -2.91 -0.02 4.24 16 18 C 0.03 1.66 5.16 85.25 0.44 2.10 16 19 N -0.83 -45.14 10.94 21.82 0.24 -44.90 16 20 Si 0.99 38.66 29.59 68.60 2.03 40.69 16 21 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 22 H -0.27 -10.17 7.11 99.48 0.71 -9.47 16 23 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 24 C -0.25 -12.66 9.70 22.85 0.22 -12.44 16 25 C 0.15 4.25 8.23 138.33 1.14 5.38 16 26 N -0.53 -18.78 11.25 -187.26 -2.11 -20.88 16 27 C -0.06 -1.68 11.86 83.52 0.99 -0.69 16 28 C -0.02 -0.30 12.04 83.01 1.00 0.70 16 29 N -0.47 -8.88 3.25 -486.88 -1.58 -10.46 16 30 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 33 H 0.12 0.43 7.81 -2.39 -0.02 0.41 16 34 H 0.14 0.39 7.89 -2.39 -0.02 0.37 16 35 H 0.42 6.73 8.42 -92.71 -0.78 5.94 16 36 H 0.42 11.56 8.83 -92.71 -0.82 10.74 16 37 H 0.09 5.11 6.48 -2.91 -0.02 5.09 16 38 H 0.10 5.10 8.06 -2.91 -0.02 5.08 16 39 H 0.10 6.11 6.17 -2.91 -0.02 6.09 16 40 H 0.29 14.20 8.30 -92.71 -0.77 13.43 16 41 H 0.11 5.14 8.06 -2.91 -0.02 5.12 16 42 H 0.18 4.05 8.06 -2.91 -0.02 4.02 16 43 H 0.21 2.03 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -86.67 361.54 1.38 -85.30 By element: Atomic # 1 Polarization: 39.53 SS G_CDS: -0.54 Total: 39.00 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: 7.44 Total: -12.36 kcal Atomic # 7 Polarization: -115.46 SS G_CDS: -7.50 Total: -122.96 kcal Atomic # 8 Polarization: -29.61 SS G_CDS: -0.06 Total: -29.67 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 2.03 Total: 40.69 kcal Total: -86.67 1.38 -85.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556669555.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.011 kcal (2) G-P(sol) polarization free energy of solvation -86.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds