Wall clock time and date at job start Tue Mar 31 2020 15:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00006 * 2 1 4 4 H 1.09000 * 109.47411 * 29.99509 * 3 2 1 5 5 C 1.53006 * 109.47000 * 269.99495 * 3 2 1 6 6 C 1.50699 * 109.47158 * 149.99862 * 3 2 1 7 7 N 1.29025 * 124.91875 * 224.99454 * 6 3 2 8 8 C 1.31782 * 117.12799 * 179.97438 * 7 6 3 9 9 C 1.50696 * 122.74887 * 180.02562 * 8 7 6 10 10 N 1.46504 * 109.47398 * 274.99937 * 9 8 7 11 11 C 1.34773 * 120.00298 * 179.97438 * 10 9 8 12 12 O 1.21277 * 120.00100 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.99665 * 179.97438 * 11 10 9 14 14 C 1.53009 * 109.46730 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47082 * 180.02562 * 14 13 11 16 16 C 1.52992 * 109.47209 * 179.97438 * 15 14 13 17 17 C 1.50702 * 109.47342 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00000 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00171 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99927 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99864 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46788 * 90.00315 * 21 19 17 23 23 H 1.48503 * 109.47356 * 209.99943 * 21 19 17 24 24 H 1.48502 * 109.47375 * 330.00421 * 21 19 17 25 25 C 1.33637 * 114.50031 * 0.02562 * 8 7 6 26 26 S 1.70983 * 124.91630 * 44.69379 * 6 3 2 27 27 H 1.08996 * 109.47253 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47360 * 300.00448 * 1 2 3 29 29 H 1.08997 * 109.46770 * 60.00516 * 1 2 3 30 30 H 1.09001 * 109.47002 * 59.99969 * 5 3 2 31 31 H 1.08993 * 109.46955 * 180.02562 * 5 3 2 32 32 H 1.09000 * 109.47050 * 300.00235 * 5 3 2 33 33 H 1.09002 * 109.47277 * 35.00134 * 9 8 7 34 34 H 1.09005 * 109.47076 * 155.00206 * 9 8 7 35 35 H 0.97009 * 119.99508 * 0.02562 * 10 9 8 36 36 H 1.08996 * 109.47888 * 300.00369 * 13 11 10 37 37 H 1.08999 * 109.46712 * 60.00960 * 13 11 10 38 38 H 1.09002 * 109.47251 * 300.00278 * 14 13 11 39 39 H 1.08992 * 109.46845 * 60.00454 * 14 13 11 40 40 H 1.09002 * 109.47033 * 300.00079 * 15 14 13 41 41 H 1.09005 * 109.47103 * 60.00018 * 15 14 13 42 42 H 1.08996 * 109.47672 * 300.00116 * 16 15 14 43 43 H 1.09005 * 109.47005 * 60.00041 * 16 15 14 44 44 H 0.97002 * 119.99901 * 180.02562 * 20 19 17 45 45 H 1.08002 * 126.04120 * 179.97438 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5137 5 6 2.2178 1.7713 -1.4426 6 6 3.3386 1.2639 0.7104 7 7 3.7375 2.1279 1.5817 8 6 4.9308 1.9422 2.1093 9 6 5.5210 2.8722 3.1377 10 7 6.1745 3.9960 2.4622 11 6 6.7755 4.9606 3.1866 12 8 6.7757 4.8981 4.3978 13 6 7.4481 6.1162 2.4915 14 6 8.0473 7.0605 3.5358 15 6 8.7297 8.2341 2.8302 16 6 9.3283 9.1787 3.8743 17 6 10.0010 10.3343 3.1793 18 1 10.0012 10.3898 2.1008 19 6 10.6163 11.3209 3.9204 20 7 10.6165 11.2531 5.2338 21 14 11.4507 12.7530 3.0589 22 1 10.4721 13.8534 2.8670 23 1 12.5838 13.2372 3.8878 24 1 11.9595 12.3070 1.7370 25 6 5.5745 0.8618 1.6575 26 16 4.5323 0.0609 0.4840 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.2570 1.8013 -1.9565 31 1 2.6615 2.7668 -1.4426 32 1 2.8830 1.0773 -1.9563 33 1 4.7286 3.2483 3.7848 34 1 6.2543 2.3326 3.7372 35 1 6.1740 4.0461 1.4934 36 1 8.2409 5.7399 1.8451 37 1 6.7153 6.6556 1.8915 38 1 7.2548 7.4369 4.1825 39 1 8.7802 6.5209 4.1355 40 1 9.5222 7.8580 2.1832 41 1 7.9965 8.7737 2.2306 42 1 8.5357 9.5548 4.5210 43 1 10.0615 8.6394 4.4742 44 1 11.0491 11.9473 5.7552 45 1 6.5580 0.5348 1.9612 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588637779.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:19 Heat of formation + Delta-G solvation = -61.535864 kcal Electronic energy + Delta-G solvation = -23736.817211 eV Core-core repulsion = 20073.643952 eV Total energy + Delta-G solvation = -3663.173258 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.64077 -39.48756 -38.69966 -35.18903 -34.67344 -32.96147 -32.56907 -30.58318 -29.62352 -27.46666 -27.37042 -25.68747 -24.98186 -22.48654 -21.98043 -20.45306 -20.16008 -19.92101 -18.50897 -16.94555 -16.82479 -16.62933 -16.32209 -16.06745 -15.85196 -15.67403 -14.73515 -14.57677 -14.39143 -14.28182 -13.86206 -13.56475 -13.46110 -13.23857 -13.05235 -12.77419 -12.57943 -12.27857 -12.07494 -11.78210 -11.65472 -11.61726 -11.54057 -10.95648 -10.50422 -10.47774 -10.46854 -10.37346 -10.11799 -9.91739 -9.85158 -9.57626 -9.32860 -9.17942 -9.14291 -8.94154 -8.27761 -5.92584 -3.95007 0.16489 0.87516 1.29492 2.08347 2.75435 2.79496 3.35767 3.35915 3.41774 3.45065 3.77060 4.21193 4.45293 4.50010 4.51232 4.66388 4.74402 4.81156 4.82552 4.92355 5.05331 5.14020 5.14705 5.28918 5.37125 5.41146 5.42901 5.47626 5.53183 5.63305 5.90561 6.18250 6.26515 6.34987 6.42181 6.58996 6.88261 7.06249 7.23191 7.23965 7.44162 7.77252 7.93665 8.09130 8.27682 8.50941 9.12738 9.68472 11.18706 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.025990 B = 0.001605 C = 0.001567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.063500 B =17441.939509 C =17864.458289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.162 3.838 4 H 0.094 0.906 5 C -0.169 4.169 6 C 0.041 3.959 7 N -0.454 5.454 8 C 0.050 3.950 9 C 0.197 3.803 10 N -0.733 5.733 11 C 0.514 3.486 12 O -0.534 6.534 13 C -0.137 4.137 14 C -0.103 4.103 15 C -0.110 4.110 16 C 0.019 3.981 17 C -0.520 4.520 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C -0.243 4.243 26 S 0.172 5.828 27 H 0.091 0.909 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.400 0.600 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.260 0.740 45 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.796 -28.328 -14.751 37.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.100 3.900 4 H 0.111 0.889 5 C -0.228 4.228 6 C -0.237 4.237 7 N -0.169 5.169 8 C -0.083 4.083 9 C 0.071 3.929 10 N -0.387 5.387 11 C 0.302 3.698 12 O -0.410 6.410 13 C -0.177 4.177 14 C -0.141 4.141 15 C -0.148 4.148 16 C -0.018 4.018 17 C -0.559 4.559 18 H 0.072 0.928 19 C -0.146 4.146 20 N -0.534 5.534 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.384 4.384 26 S 0.428 5.572 27 H 0.110 0.890 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.234 0.766 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.069 0.931 45 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -19.913 -28.934 -14.190 37.883 hybrid contribution 0.604 1.545 -0.231 1.675 sum -19.310 -27.389 -14.422 36.483 Atomic orbital electron populations 1.22867 0.79680 1.03372 1.00544 1.87904 1.20733 1.26328 1.95126 1.20316 0.88454 0.86106 0.95080 0.88861 1.22297 1.03442 1.02534 0.94496 1.26687 1.01407 0.95908 0.99741 1.66021 1.14580 1.27771 1.08570 1.20192 0.90272 0.96944 1.00866 1.19658 0.96708 0.85520 0.91000 1.46074 1.58004 1.24242 1.10374 1.21110 0.77734 0.83060 0.87937 1.90713 1.58970 1.77100 1.14208 1.21790 1.00763 0.94697 1.00481 1.21456 1.00248 0.95766 0.96661 1.21651 0.98453 0.95290 0.99413 1.19100 0.95723 0.93228 0.93730 1.21292 1.34661 1.06931 0.92987 0.92764 1.25041 0.96468 0.98229 0.94826 1.69978 1.44535 1.34234 1.04692 0.86613 0.79169 0.82797 0.79503 1.20729 1.21265 1.19946 1.27163 1.06091 1.00747 1.04390 1.84113 1.07931 1.27444 1.37722 0.89017 0.93475 0.93459 0.90914 0.90587 0.91266 0.89768 0.89706 0.76595 0.89141 0.89120 0.91771 0.91773 0.93490 0.93489 0.96569 0.96566 0.93072 0.79994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 10.82 101.05 1.09 1.22 16 2 O -0.38 -2.65 10.17 -35.23 -0.36 -3.01 16 3 C 0.16 1.09 3.24 -27.88 -0.09 1.00 16 4 H 0.09 0.60 7.79 -51.93 -0.40 0.20 16 5 C -0.17 -0.85 9.51 37.16 0.35 -0.50 16 6 C 0.04 0.35 6.35 -13.46 -0.09 0.26 16 7 N -0.45 -4.65 10.53 -8.06 -0.08 -4.73 16 8 C 0.05 0.47 6.11 -84.23 -0.51 -0.04 16 9 C 0.20 2.06 6.11 -5.19 -0.03 2.03 16 10 N -0.73 -7.95 5.55 -61.47 -0.34 -8.29 16 11 C 0.51 7.34 7.83 -10.99 -0.09 7.26 16 12 O -0.53 -9.87 15.98 5.56 0.09 -9.78 16 13 C -0.14 -1.87 5.70 -27.88 -0.16 -2.03 16 14 C -0.10 -1.89 4.50 -26.73 -0.12 -2.01 16 15 C -0.11 -2.31 5.15 -26.74 -0.14 -2.45 16 16 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 17 C -0.52 -15.18 9.11 -34.44 -0.31 -15.49 16 18 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -27.74 13.29 55.43 0.74 -27.00 16 21 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 25 C -0.24 -1.83 11.11 29.12 0.32 -1.51 16 26 S 0.17 1.23 23.01 -107.50 -2.47 -1.25 16 27 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.05 0.17 8.09 -51.93 -0.42 -0.25 16 29 H 0.05 0.13 7.87 -51.93 -0.41 -0.28 16 30 H 0.07 0.27 7.87 -51.93 -0.41 -0.14 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 35 H 0.40 3.48 8.46 -40.82 -0.35 3.13 16 36 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 39 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 40 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 45 H 0.18 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 395.26 15.07 5.96 5.96 Total: -1.00 -35.38 395.26 -8.94 -44.32 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -7.44 Total: -2.94 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: 0.00 Total: -10.35 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.31 Total: -40.02 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: -0.27 Total: -12.79 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 16 Polarization: 1.23 SS G_CDS: -2.47 Total: -1.25 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.38 -8.94 -44.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588637779.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.213 kcal (2) G-P(sol) polarization free energy of solvation -35.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds