Wall clock time and date at job start Tue Mar 31 2020 15:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46902 * 111.00120 * 2 1 4 4 H 1.09001 * 109.47025 * 34.99554 * 3 2 1 5 5 C 1.53000 * 109.46927 * 274.99857 * 3 2 1 6 6 C 1.52995 * 109.47183 * 154.99873 * 3 2 1 7 7 C 1.50697 * 109.47196 * 294.99802 * 6 3 2 8 8 N 1.30085 * 126.15494 * 269.96279 * 7 6 3 9 9 O 1.21281 * 110.55047 * 179.77912 * 8 7 6 10 10 C 1.34352 * 109.66305 * 0.40207 * 9 8 7 11 11 C 1.46987 * 126.71216 * 179.86573 * 10 9 8 12 12 C 1.36148 * 125.28244 * 174.46574 * 11 10 9 13 13 C 1.46136 * 106.94999 * 179.97438 * 12 11 10 14 14 C 1.39805 * 133.74018 * 179.97438 * 13 12 11 15 15 C 1.36674 * 119.77200 * 180.02562 * 14 13 12 16 16 C 1.38823 * 120.53106 * 0.04013 * 15 14 13 17 17 C 1.37882 * 120.69380 * 359.94025 * 16 15 14 18 18 C 1.39067 * 119.82138 * 0.04205 * 17 16 15 19 19 N 1.37881 * 133.19280 * 179.97438 * 18 17 16 20 20 C 1.36964 * 125.13279 * 359.97438 * 19 18 17 21 21 H 1.08007 * 120.00300 * 140.97246 * 20 19 18 22 22 C 1.38976 * 119.99999 * 320.96526 * 20 19 18 23 23 N 1.31369 * 119.99819 * 341.83082 * 22 20 19 24 24 Si 1.86803 * 119.99740 * 161.82731 * 22 20 19 25 25 H 1.48496 * 109.47098 * 60.00647 * 24 22 20 26 26 H 1.48507 * 109.46746 * 180.02562 * 24 22 20 27 27 H 1.48495 * 109.47246 * 300.00109 * 24 22 20 28 28 N 1.32437 * 106.57394 * 359.60634 * 10 9 8 29 29 H 1.08994 * 109.47508 * 300.00399 * 1 2 3 30 30 H 1.09002 * 109.46862 * 60.00268 * 1 2 3 31 31 H 1.08999 * 109.47011 * 179.97438 * 1 2 3 32 32 H 1.00905 * 110.99990 * 123.95145 * 2 1 3 33 33 H 1.08997 * 109.47481 * 300.00285 * 5 3 2 34 34 H 1.09005 * 109.47557 * 59.99746 * 5 3 2 35 35 H 1.08999 * 109.47228 * 179.97438 * 5 3 2 36 36 H 1.08999 * 109.46778 * 174.99982 * 6 3 2 37 37 H 1.08994 * 109.47328 * 55.00138 * 6 3 2 38 38 H 1.08001 * 126.52870 * 359.93702 * 12 11 10 39 39 H 1.07994 * 120.11712 * 359.72629 * 14 13 12 40 40 H 1.07994 * 119.73250 * 179.97438 * 15 14 13 41 41 H 1.07992 * 119.65204 * 180.02562 * 16 15 14 42 42 H 1.07993 * 120.08560 * 180.02562 * 17 16 15 43 43 H 0.97006 * 119.99542 * 175.08100 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3398 2.0123 0.5894 5 6 2.0609 1.8926 -1.4370 6 6 3.3987 1.3790 0.6096 7 6 3.3178 0.9831 2.0614 8 7 3.1554 1.7897 3.0690 9 8 3.1260 1.1692 4.1106 10 6 3.2812 -0.1417 3.8605 11 6 3.3064 -1.2281 4.8502 12 6 3.3589 -2.5568 4.5582 13 6 3.3673 -3.2730 5.8321 14 6 3.4113 -4.6264 6.1798 15 6 3.4058 -4.9890 7.4976 16 6 3.3561 -4.0241 8.4944 17 6 3.3125 -2.6835 8.1747 18 6 3.3175 -2.2901 6.8408 19 7 3.2817 -1.0597 6.2197 20 6 3.2281 0.1475 6.8645 21 1 3.7925 0.9873 6.4865 22 6 2.4473 0.2920 8.0051 23 7 1.5003 -0.5798 8.2676 24 14 2.7446 1.7258 9.1649 25 1 2.5501 3.0031 8.4330 26 1 1.7869 1.6530 10.2976 27 1 4.1334 1.6607 9.6867 28 7 3.4011 -0.2641 2.5473 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8306 -0.5261 0.7814 33 1 2.7165 1.2517 -2.0265 34 1 1.0612 1.8871 -1.8715 35 1 2.4511 2.9103 -1.4370 36 1 3.8244 2.3792 0.5290 37 1 4.0312 0.6708 0.0746 38 1 3.3880 -2.9978 3.5728 39 1 3.4446 -5.3829 5.4099 40 1 3.4394 -6.0346 7.7655 41 1 3.3528 -4.3265 9.5311 42 1 3.2744 -1.9411 8.9581 43 1 1.0031 -0.5204 9.0984 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592355410.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:14 Heat of formation + Delta-G solvation = 125.104533 kcal Electronic energy + Delta-G solvation = -27380.380708 eV Core-core repulsion = 23622.149584 eV Total energy + Delta-G solvation = -3758.231124 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.94390 -40.24920 -37.74144 -36.23511 -35.15219 -33.77078 -32.53675 -31.13356 -30.69000 -29.12306 -28.02337 -27.81712 -25.04150 -24.98398 -23.98761 -22.50430 -21.39203 -20.85360 -20.07800 -19.58081 -18.10426 -17.57928 -16.92634 -16.04816 -15.79157 -15.36714 -15.11078 -14.92120 -14.77567 -14.54651 -13.67714 -13.50896 -13.16003 -13.06357 -12.97897 -12.84346 -12.47641 -12.29892 -12.05919 -12.02707 -11.87267 -11.70101 -11.48883 -11.39018 -11.28104 -11.24731 -11.05009 -10.84217 -10.68641 -10.56017 -10.44602 -9.90376 -9.70325 -9.13042 -8.67979 -8.50663 -7.28939 -6.97876 -6.65821 -4.60467 1.15745 2.14756 2.63160 2.66027 2.96850 2.98517 3.00702 3.29750 3.61799 3.81458 3.85019 4.12998 4.26023 4.54802 4.74721 4.80412 4.95790 5.07293 5.22858 5.36521 5.44077 5.48531 5.59782 5.65284 5.70741 5.73491 5.83499 5.86753 5.89057 5.98331 6.13155 6.16471 6.29227 6.33663 6.42151 6.53821 6.77516 6.88351 6.95916 6.97926 7.03171 7.36963 7.39061 7.45905 7.54965 7.77012 7.88569 8.25787 8.56893 8.70013 9.12006 10.09040 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.012649 B = 0.004060 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.035415 B = 6894.425778 C = 8401.443852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.692 5.692 3 C 0.086 3.914 4 H 0.046 0.954 5 C -0.136 4.136 6 C -0.028 4.028 7 C 0.160 3.840 8 N -0.402 5.402 9 O 0.090 5.910 10 C 0.291 3.709 11 C 0.071 3.929 12 C -0.165 4.165 13 C -0.131 4.131 14 C -0.081 4.081 15 C -0.160 4.160 16 C -0.140 4.140 17 C -0.059 4.059 18 C 0.110 3.890 19 N -0.255 5.255 20 C -0.358 4.358 21 H 0.109 0.891 22 C 0.059 3.941 23 N -0.814 5.814 24 Si 0.925 3.075 25 H -0.263 1.263 26 H -0.275 1.275 27 H -0.263 1.263 28 N -0.491 5.491 29 H 0.019 0.981 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.355 0.645 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.140 0.860 39 H 0.107 0.893 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.115 0.885 43 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.917 0.522 -8.209 8.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.326 5.326 3 C -0.025 4.025 4 H 0.064 0.936 5 C -0.194 4.194 6 C -0.068 4.068 7 C -0.114 4.114 8 N -0.112 5.112 9 O 0.033 5.967 10 C 0.077 3.923 11 C -0.043 4.043 12 C -0.195 4.195 13 C -0.136 4.136 14 C -0.100 4.100 15 C -0.179 4.179 16 C -0.161 4.161 17 C -0.079 4.079 18 C -0.005 4.005 19 N 0.082 4.918 20 C -0.486 4.486 21 H 0.127 0.873 22 C -0.155 4.155 23 N -0.443 5.443 24 Si 0.748 3.252 25 H -0.188 1.188 26 H -0.200 1.200 27 H -0.188 1.188 28 N -0.227 5.227 29 H 0.038 0.962 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.176 0.824 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.114 0.886 37 H 0.121 0.879 38 H 0.158 0.842 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.125 0.875 42 H 0.133 0.867 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.693 1.494 -9.115 9.262 hybrid contribution -0.371 0.941 1.801 2.065 sum 0.321 2.435 -7.314 7.715 Atomic orbital electron populations 1.22217 0.88055 1.01952 1.00021 1.60556 1.07702 1.13132 1.51241 1.21528 0.93836 0.90428 0.96735 0.93603 1.21759 1.02331 1.00215 0.95136 1.20171 0.98634 1.03408 0.84546 1.25620 1.01487 0.85545 0.98710 1.74558 1.22525 1.21222 0.92898 1.85579 1.65117 1.18272 1.27752 1.25271 0.92924 0.83893 0.90197 1.16748 1.16988 0.88636 0.81932 1.21266 1.12488 0.89194 0.96554 1.18867 1.09640 0.92883 0.92195 1.20005 1.01097 0.93316 0.95580 1.20317 1.06632 0.98071 0.92857 1.20608 1.05016 0.92327 0.98120 1.20095 0.99193 0.95082 0.93508 1.18029 1.05300 0.83821 0.93339 1.39893 1.45698 1.05041 1.01137 1.19812 1.29270 0.88450 1.11039 0.87324 1.25581 0.92352 0.99028 0.98543 1.70009 1.14818 1.35682 1.23748 0.86005 0.79229 0.80728 0.79199 1.18789 1.20011 1.18773 1.72141 1.24054 1.21729 1.04764 0.96233 0.91840 0.91301 0.82390 0.91582 0.92480 0.92381 0.88604 0.87855 0.84203 0.87456 0.87646 0.87458 0.86734 0.90513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.50 60.07 0.63 0.97 16 2 N -0.69 -9.49 6.66 -114.01 -0.76 -10.25 16 3 C 0.09 1.07 2.64 -67.71 -0.18 0.90 16 4 H 0.05 0.63 7.80 -51.93 -0.40 0.23 16 5 C -0.14 -1.32 9.41 37.16 0.35 -0.97 16 6 C -0.03 -0.37 5.44 -27.89 -0.15 -0.52 16 7 C 0.16 2.81 6.76 -156.61 -1.06 1.76 16 8 N -0.40 -7.98 12.14 31.27 0.38 -7.60 16 9 O 0.09 1.97 9.88 16.24 0.16 2.14 16 10 C 0.29 6.29 8.05 -14.05 -0.11 6.18 16 11 C 0.07 1.64 6.75 -82.30 -0.56 1.08 16 12 C -0.17 -3.55 10.98 -37.17 -0.41 -3.96 16 13 C -0.13 -2.90 6.35 -105.13 -0.67 -3.57 16 14 C -0.08 -1.55 10.06 -39.56 -0.40 -1.95 16 15 C -0.16 -2.88 9.98 -39.93 -0.40 -3.28 16 16 C -0.14 -2.69 10.02 -39.50 -0.40 -3.09 16 17 C -0.06 -1.32 8.55 -39.40 -0.34 -1.66 16 18 C 0.11 2.63 6.07 -83.82 -0.51 2.13 16 19 N -0.25 -6.33 2.82 -56.08 -0.16 -6.49 16 20 C -0.36 -8.90 8.89 -14.99 -0.13 -9.04 16 21 H 0.11 2.65 7.18 -52.48 -0.38 2.28 16 22 C 0.06 1.41 4.37 -17.48 -0.08 1.33 16 23 N -0.81 -20.25 10.98 55.50 0.61 -19.64 16 24 Si 0.93 18.35 29.59 -169.99 -5.03 13.32 16 25 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 26 H -0.28 -5.34 7.11 56.52 0.40 -4.93 16 27 H -0.26 -5.13 7.11 56.52 0.40 -4.72 16 28 N -0.49 -9.48 10.52 -10.23 -0.11 -9.59 16 29 H 0.02 0.26 8.05 -51.93 -0.42 -0.16 16 30 H 0.06 0.67 7.44 -51.93 -0.39 0.28 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.36 5.57 6.68 -39.29 -0.26 5.31 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.53 7.45 -51.93 -0.39 0.15 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.14 2.65 8.06 -52.49 -0.42 2.23 16 39 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 40 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 41 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 42 H 0.11 2.61 6.45 -52.49 -0.34 2.27 16 43 H 0.28 6.56 8.32 -40.82 -0.34 6.22 16 LS Contribution 361.07 15.07 5.44 5.44 Total: -1.00 -26.81 361.07 -9.38 -36.19 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -5.51 Total: 10.19 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: -4.40 Total: -13.69 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: -0.04 Total: -53.57 kcal Atomic # 8 Polarization: 1.97 SS G_CDS: 0.16 Total: 2.14 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.03 Total: 13.32 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -26.81 -9.38 -36.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592355410.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.290 kcal (2) G-P(sol) polarization free energy of solvation -26.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds