Wall clock time and date at job start Tue Mar 31 2020 15:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46902 * 111.00120 * 2 1 4 4 H 1.09001 * 109.47025 * 34.99554 * 3 2 1 5 5 C 1.53000 * 109.46927 * 274.99857 * 3 2 1 6 6 C 1.52995 * 109.47183 * 154.99873 * 3 2 1 7 7 C 1.50697 * 109.47196 * 294.99802 * 6 3 2 8 8 N 1.30085 * 126.15494 * 269.96279 * 7 6 3 9 9 O 1.21281 * 110.55047 * 179.77912 * 8 7 6 10 10 C 1.34352 * 109.66305 * 0.40207 * 9 8 7 11 11 C 1.46987 * 126.71216 * 179.86573 * 10 9 8 12 12 C 1.36148 * 125.28244 * 174.46574 * 11 10 9 13 13 C 1.46136 * 106.94999 * 179.97438 * 12 11 10 14 14 C 1.39805 * 133.74018 * 179.97438 * 13 12 11 15 15 C 1.36674 * 119.77200 * 180.02562 * 14 13 12 16 16 C 1.38823 * 120.53106 * 0.04013 * 15 14 13 17 17 C 1.37882 * 120.69380 * 359.94025 * 16 15 14 18 18 C 1.39067 * 119.82138 * 0.04205 * 17 16 15 19 19 N 1.37881 * 133.19280 * 179.97438 * 18 17 16 20 20 C 1.36964 * 125.13279 * 359.97438 * 19 18 17 21 21 H 1.08007 * 120.00300 * 140.97246 * 20 19 18 22 22 C 1.38976 * 119.99999 * 320.96526 * 20 19 18 23 23 N 1.31369 * 119.99819 * 341.83082 * 22 20 19 24 24 Si 1.86803 * 119.99740 * 161.82731 * 22 20 19 25 25 H 1.48496 * 109.47098 * 60.00647 * 24 22 20 26 26 H 1.48507 * 109.46746 * 180.02562 * 24 22 20 27 27 H 1.48495 * 109.47246 * 300.00109 * 24 22 20 28 28 N 1.32437 * 106.57394 * 359.60634 * 10 9 8 29 29 H 1.08994 * 109.47508 * 300.00399 * 1 2 3 30 30 H 1.09002 * 109.46862 * 60.00268 * 1 2 3 31 31 H 1.08999 * 109.47011 * 179.97438 * 1 2 3 32 32 H 1.00905 * 110.99990 * 123.95145 * 2 1 3 33 33 H 1.08997 * 109.47481 * 300.00285 * 5 3 2 34 34 H 1.09005 * 109.47557 * 59.99746 * 5 3 2 35 35 H 1.08999 * 109.47228 * 179.97438 * 5 3 2 36 36 H 1.08999 * 109.46778 * 174.99982 * 6 3 2 37 37 H 1.08994 * 109.47328 * 55.00138 * 6 3 2 38 38 H 1.08001 * 126.52870 * 359.93702 * 12 11 10 39 39 H 1.07994 * 120.11712 * 359.72629 * 14 13 12 40 40 H 1.07994 * 119.73250 * 179.97438 * 15 14 13 41 41 H 1.07992 * 119.65204 * 180.02562 * 16 15 14 42 42 H 1.07993 * 120.08560 * 180.02562 * 17 16 15 43 43 H 0.97006 * 119.99542 * 175.08100 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3398 2.0123 0.5894 5 6 2.0609 1.8926 -1.4370 6 6 3.3987 1.3790 0.6096 7 6 3.3178 0.9831 2.0614 8 7 3.1554 1.7897 3.0690 9 8 3.1260 1.1692 4.1106 10 6 3.2812 -0.1417 3.8605 11 6 3.3064 -1.2281 4.8502 12 6 3.3589 -2.5568 4.5582 13 6 3.3673 -3.2730 5.8321 14 6 3.4113 -4.6264 6.1798 15 6 3.4058 -4.9890 7.4976 16 6 3.3561 -4.0241 8.4944 17 6 3.3125 -2.6835 8.1747 18 6 3.3175 -2.2901 6.8408 19 7 3.2817 -1.0597 6.2197 20 6 3.2281 0.1475 6.8645 21 1 3.7925 0.9873 6.4865 22 6 2.4473 0.2920 8.0051 23 7 1.5003 -0.5798 8.2676 24 14 2.7446 1.7258 9.1649 25 1 2.5501 3.0031 8.4330 26 1 1.7869 1.6530 10.2976 27 1 4.1334 1.6607 9.6867 28 7 3.4011 -0.2641 2.5473 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8306 -0.5261 0.7814 33 1 2.7165 1.2517 -2.0265 34 1 1.0612 1.8871 -1.8715 35 1 2.4511 2.9103 -1.4370 36 1 3.8244 2.3792 0.5290 37 1 4.0312 0.6708 0.0746 38 1 3.3880 -2.9978 3.5728 39 1 3.4446 -5.3829 5.4099 40 1 3.4394 -6.0346 7.7655 41 1 3.3528 -4.3265 9.5311 42 1 3.2744 -1.9411 8.9581 43 1 1.0031 -0.5204 9.0984 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592355410.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:13 Heat of formation + Delta-G solvation = 109.468525 kcal Electronic energy + Delta-G solvation = -27381.058736 eV Core-core repulsion = 23622.149584 eV Total energy + Delta-G solvation = -3758.909152 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -46.49574 -41.91753 -38.84047 -37.81720 -36.61658 -35.48955 -33.97676 -32.38610 -32.26942 -30.72348 -29.59493 -28.90711 -26.75962 -26.11055 -25.53178 -23.94475 -22.95613 -22.18383 -21.50751 -21.13276 -19.78361 -19.13435 -18.47696 -17.55412 -17.01854 -16.83317 -16.50095 -16.40773 -16.26611 -15.74996 -15.39045 -14.80883 -14.65787 -14.58117 -14.53309 -13.84366 -13.74298 -13.59639 -13.47487 -13.42757 -13.13449 -13.03243 -12.98699 -12.88606 -12.67602 -12.44050 -12.29890 -12.23801 -12.18509 -12.08817 -11.86862 -11.49305 -11.27901 -10.83636 -10.33337 -9.57557 -8.99834 -8.67106 -8.34971 -6.45067 -0.48360 0.59289 1.05455 1.11875 1.32545 1.37402 1.43625 1.66528 2.01731 2.13026 2.29085 2.77403 2.81352 3.09865 3.30940 3.34677 3.73315 3.83073 4.09987 4.22307 4.23084 4.38643 4.43237 4.45105 4.47053 4.54337 4.66323 4.71633 4.75331 4.81079 4.81925 4.88328 4.92515 4.97418 5.02434 5.10706 5.18359 5.33440 5.36930 5.42461 5.70397 5.87626 5.94449 5.95076 6.13511 6.21838 6.27098 6.54153 6.87372 7.05817 7.36574 8.33584 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.012649 B = 0.004060 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.035415 B = 6894.425778 C = 8401.443852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.697 5.697 3 C 0.086 3.914 4 H 0.029 0.971 5 C -0.129 4.129 6 C -0.028 4.028 7 C 0.175 3.825 8 N -0.417 5.417 9 O 0.060 5.940 10 C 0.279 3.721 11 C 0.046 3.954 12 C -0.156 4.156 13 C -0.153 4.153 14 C -0.079 4.079 15 C -0.155 4.155 16 C -0.125 4.125 17 C -0.096 4.096 18 C 0.085 3.915 19 N -0.281 5.281 20 C -0.384 4.384 21 H 0.098 0.902 22 C 0.026 3.974 23 N -0.847 5.847 24 Si 0.985 3.015 25 H -0.266 1.266 26 H -0.265 1.265 27 H -0.258 1.258 28 N -0.484 5.484 29 H 0.002 0.998 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.341 0.659 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.164 0.836 39 H 0.142 0.858 40 H 0.150 0.850 41 H 0.138 0.862 42 H 0.098 0.902 43 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.275 -0.764 -9.452 9.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.329 5.329 3 C -0.025 4.025 4 H 0.047 0.953 5 C -0.186 4.186 6 C -0.066 4.066 7 C -0.099 4.099 8 N -0.132 5.132 9 O 0.009 5.991 10 C 0.064 3.936 11 C -0.067 4.067 12 C -0.186 4.186 13 C -0.157 4.157 14 C -0.098 4.098 15 C -0.174 4.174 16 C -0.146 4.146 17 C -0.116 4.116 18 C -0.029 4.029 19 N 0.054 4.946 20 C -0.511 4.511 21 H 0.115 0.885 22 C -0.185 4.185 23 N -0.476 5.476 24 Si 0.806 3.194 25 H -0.191 1.191 26 H -0.190 1.190 27 H -0.182 1.182 28 N -0.220 5.220 29 H 0.021 0.979 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.160 0.840 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.181 0.819 39 H 0.160 0.840 40 H 0.168 0.832 41 H 0.156 0.844 42 H 0.116 0.884 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.051 0.205 -10.344 10.399 hybrid contribution -0.467 1.185 2.057 2.419 sum 0.584 1.389 -8.287 8.423 Atomic orbital electron populations 1.22281 0.87406 1.02439 1.00163 1.60685 1.08367 1.13613 1.50250 1.21629 0.92804 0.89639 0.98427 0.95262 1.21719 1.02993 1.01195 0.92733 1.20505 0.99609 1.05076 0.81453 1.26467 0.98707 0.84593 1.00135 1.74558 1.24037 1.21569 0.92987 1.85563 1.66026 1.18573 1.28958 1.25347 0.93569 0.83802 0.90836 1.17190 1.17648 0.89838 0.82033 1.21606 1.10788 0.88651 0.97505 1.19289 1.10511 0.94140 0.91807 1.20460 0.99560 0.92556 0.97229 1.20809 1.04620 0.99941 0.91983 1.21063 1.02024 0.91192 1.00286 1.20190 1.02269 0.96407 0.92716 1.18543 1.05620 0.84168 0.94590 1.40058 1.47528 1.05264 1.01721 1.19883 1.30149 0.88840 1.12224 0.88465 1.26331 0.91674 1.01093 0.99358 1.70078 1.15794 1.37432 1.24321 0.85125 0.79388 0.77502 0.77398 1.19085 1.18950 1.18233 1.72179 1.23677 1.22569 1.03615 0.97907 0.89835 0.90737 0.84039 0.90920 0.91997 0.90569 0.86255 0.86317 0.81900 0.83988 0.83231 0.84411 0.88405 0.90350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.50 127.69 1.34 1.97 16 2 N -0.70 -18.31 6.66 -514.62 -3.43 -21.74 16 3 C 0.09 2.02 2.64 44.91 0.12 2.13 16 4 H 0.03 0.79 7.80 -2.39 -0.02 0.77 16 5 C -0.13 -2.12 9.41 71.98 0.68 -1.45 16 6 C -0.03 -0.67 5.44 29.85 0.16 -0.51 16 7 C 0.17 6.13 6.76 138.54 0.94 7.07 16 8 N -0.42 -16.98 12.14 -58.15 -0.71 -17.69 16 9 O 0.06 2.78 9.88 68.19 0.67 3.46 16 10 C 0.28 12.55 8.05 87.00 0.70 13.25 16 11 C 0.05 2.21 6.75 39.98 0.27 2.48 16 12 C -0.16 -6.74 10.98 23.83 0.26 -6.48 16 13 C -0.15 -6.73 6.35 -20.19 -0.13 -6.86 16 14 C -0.08 -2.82 10.06 22.28 0.22 -2.60 16 15 C -0.15 -5.05 9.98 22.04 0.22 -4.83 16 16 C -0.13 -4.60 10.02 22.33 0.22 -4.37 16 17 C -0.10 -4.36 8.55 22.38 0.19 -4.17 16 18 C 0.08 4.19 6.07 39.05 0.24 4.43 16 19 N -0.28 -14.70 2.82 -331.33 -0.93 -15.63 16 20 C -0.38 -20.28 8.89 84.07 0.75 -19.53 16 21 H 0.10 5.13 7.18 -2.91 -0.02 5.11 16 22 C 0.03 1.29 4.37 84.94 0.37 1.66 16 23 N -0.85 -43.99 10.98 21.67 0.24 -43.75 16 24 Si 0.99 39.11 29.59 68.60 2.03 41.14 16 25 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 26 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 27 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 28 N -0.48 -18.89 10.52 -302.53 -3.18 -22.07 16 29 H 0.00 0.06 8.05 -2.39 -0.02 0.04 16 30 H 0.08 1.62 7.44 -2.39 -0.02 1.60 16 31 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.34 10.51 6.68 -89.69 -0.60 9.91 16 33 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.06 0.98 7.45 -2.38 -0.02 0.96 16 35 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.16 6.05 8.06 -2.91 -0.02 6.03 16 39 H 0.14 4.01 8.06 -2.91 -0.02 3.98 16 40 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 41 H 0.14 4.11 8.06 -2.91 -0.02 4.08 16 42 H 0.10 4.68 6.45 -2.91 -0.02 4.66 16 43 H 0.29 13.75 8.32 -92.70 -0.77 12.98 16 Total: -1.00 -61.69 361.07 1.69 -60.00 By element: Atomic # 1 Polarization: 33.63 SS G_CDS: 0.45 Total: 34.08 kcal Atomic # 6 Polarization: -24.35 SS G_CDS: 6.55 Total: -17.79 kcal Atomic # 7 Polarization: -112.86 SS G_CDS: -8.01 Total: -120.88 kcal Atomic # 8 Polarization: 2.78 SS G_CDS: 0.67 Total: 3.46 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.14 kcal Total: -61.69 1.69 -60.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592355410.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.468 kcal (2) G-P(sol) polarization free energy of solvation -61.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds