Wall clock time and date at job start Tue Mar 31 2020 15:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47426 * 2 1 4 4 C 1.53006 * 109.46819 * 240.00338 * 2 1 3 5 5 C 1.52995 * 109.47056 * 177.63859 * 4 2 1 6 6 N 1.46499 * 109.47408 * 176.16037 * 5 4 2 7 7 S 1.65598 * 120.00647 * 165.00064 * 6 5 4 8 8 O 1.42096 * 106.40829 * 178.53823 * 7 6 5 9 9 O 1.42107 * 106.39655 * 311.46060 * 7 6 5 10 10 C 1.76198 * 107.21941 * 64.99635 * 7 6 5 11 11 C 1.38662 * 119.87693 * 269.73302 * 10 7 6 12 12 C 1.38613 * 120.50055 * 179.72215 * 11 10 7 13 13 C 1.37639 * 120.24964 * 0.54817 * 12 11 10 14 14 C 1.40698 * 119.74042 * 359.72744 * 13 12 11 15 15 C 1.41401 * 120.24226 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00248 * 152.67306 * 15 14 13 17 17 C 1.39944 * 119.99893 * 332.67575 * 15 14 13 18 18 N 1.30820 * 119.99918 * 160.18683 * 17 15 14 19 19 Si 1.86803 * 120.00076 * 340.18524 * 17 15 14 20 20 H 1.48498 * 109.46872 * 94.39441 * 19 17 15 21 21 H 1.48493 * 109.47245 * 214.39290 * 19 17 15 22 22 H 1.48494 * 109.47097 * 334.39714 * 19 17 15 23 23 C 1.37593 * 119.87703 * 90.00146 * 10 7 6 24 24 N 1.46905 * 109.47205 * 120.00656 * 2 1 3 25 25 C 1.46899 * 110.99597 * 290.98055 * 24 2 1 26 26 C 1.46901 * 110.99970 * 54.93312 * 24 2 1 27 27 H 1.08994 * 109.47426 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47068 * 59.99564 * 1 2 3 29 29 H 1.09006 * 109.46837 * 299.99520 * 1 2 3 30 30 H 1.09008 * 109.47038 * 297.63518 * 4 2 1 31 31 H 1.08995 * 109.46914 * 57.63849 * 4 2 1 32 32 H 1.09006 * 109.47183 * 296.15789 * 5 4 2 33 33 H 1.09001 * 109.47644 * 56.15656 * 5 4 2 34 34 H 0.97006 * 119.99744 * 344.99682 * 6 5 4 35 35 H 1.08001 * 119.74494 * 359.97438 * 11 10 7 36 36 H 1.08003 * 119.87591 * 180.25365 * 12 11 10 37 37 H 1.07993 * 120.13054 * 179.74699 * 13 12 11 38 38 H 0.97006 * 120.00142 * 179.97438 * 18 17 15 39 39 H 1.08001 * 120.12665 * 359.97438 * 23 10 7 40 40 H 1.08999 * 109.46996 * 65.56914 * 25 24 2 41 41 H 1.09004 * 109.46977 * 185.56946 * 25 24 2 42 42 H 1.09000 * 109.47486 * 305.56692 * 25 24 2 43 43 H 1.08999 * 109.46931 * 60.00444 * 26 24 2 44 44 H 1.09002 * 109.46525 * 180.02562 * 26 24 2 45 45 H 1.08991 * 109.47027 * 300.00213 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5687 -0.6700 -1.2795 6 7 4.0607 -1.4383 -2.4257 7 16 5.6280 -1.2614 -2.9301 8 8 5.8013 -2.1535 -4.0225 9 8 5.8640 0.1368 -3.0235 10 6 6.6633 -1.8551 -1.6338 11 6 7.1039 -0.9850 -0.6483 12 6 7.9140 -1.4394 0.3806 13 6 8.2993 -2.7599 0.4281 14 6 7.8629 -3.6507 -0.5698 15 6 8.2519 -5.0096 -0.5311 16 1 7.6215 -5.7646 -0.9769 17 6 9.4537 -5.3760 0.0851 18 7 9.6411 -6.6123 0.4699 19 14 10.7905 -4.1000 0.3582 20 1 10.6602 -3.5312 1.7237 21 1 12.1226 -4.7400 0.2136 22 1 10.6511 -3.0147 -0.6456 23 6 7.0360 -3.1793 -1.6064 24 7 2.0197 -0.6927 1.1994 25 6 1.7322 0.0862 2.4113 26 6 1.4523 -2.0443 1.2953 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8901 30 1 1.7116 -1.7605 -1.2284 31 1 1.6424 -0.2323 -2.1387 32 1 3.8959 0.3660 -1.3692 33 1 3.9649 -1.0976 -0.3584 34 1 3.4682 -2.0508 -2.8893 35 1 6.8103 0.0539 -0.6803 36 1 8.2481 -0.7537 1.1452 37 1 8.9339 -3.1110 1.2283 38 1 10.4743 -6.8664 0.8967 39 1 6.6949 -3.8546 -2.3772 40 1 0.6537 0.1442 2.5585 41 1 2.1909 -0.3994 3.2726 42 1 2.1386 1.0917 2.3020 43 1 1.7392 -2.6219 0.4166 44 1 1.8310 -2.5344 2.1922 45 1 0.3656 -1.9792 1.3485 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594820708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:58 Heat of formation + Delta-G solvation = -56.157423 kcal Electronic energy + Delta-G solvation = -26125.059846 eV Core-core repulsion = 22462.119814 eV Total energy + Delta-G solvation = -3662.940032 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -38.92279 -37.86987 -36.70929 -35.38887 -35.29983 -33.76968 -31.83229 -30.69048 -30.11377 -28.57355 -27.69229 -25.35758 -24.73215 -22.79482 -22.33691 -20.86022 -19.96985 -19.02963 -17.98133 -16.99294 -16.50163 -16.27867 -15.98424 -15.40153 -15.11423 -14.94582 -14.80151 -14.44830 -14.00653 -13.83119 -13.71387 -13.13520 -12.85382 -12.75639 -12.57626 -12.27540 -12.16984 -12.02966 -11.93375 -11.83676 -11.66127 -11.60965 -11.53769 -11.42176 -11.36801 -11.02405 -10.91736 -10.84297 -10.74516 -10.30640 -9.98518 -9.71830 -9.34976 -9.08731 -8.41959 -8.23087 -7.85542 -7.08601 -4.61206 0.98259 1.96688 2.46284 3.00850 3.13247 3.22496 3.51945 3.78255 3.86799 4.15368 4.36308 4.54515 4.74434 4.87410 5.01510 5.06228 5.09351 5.19716 5.22868 5.28596 5.37926 5.39259 5.51012 5.58012 5.70129 5.73490 5.76941 5.86292 5.89147 5.94709 6.06887 6.13589 6.24092 6.30022 6.50488 6.62854 6.87958 6.89368 6.89631 7.09952 7.23566 7.24586 7.44376 7.64982 7.81601 8.19940 8.46224 8.63703 9.93160 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.013236 B = 0.003835 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.869050 B = 7298.741966 C = 8342.298444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.079 3.921 3 H 0.087 0.913 4 C -0.118 4.118 5 C 0.123 3.877 6 N -1.122 6.122 7 S 2.691 3.309 8 O -0.972 6.972 9 O -0.974 6.974 10 C -0.622 4.622 11 C -0.156 4.156 12 C -0.090 4.090 13 C -0.202 4.202 14 C 0.074 3.926 15 C -0.443 4.443 16 H 0.095 0.905 17 C 0.084 3.916 18 N -0.799 5.799 19 Si 0.908 3.092 20 H -0.268 1.268 21 H -0.287 1.287 22 H -0.244 1.244 23 C -0.104 4.104 24 N -0.536 5.536 25 C 0.023 3.977 26 C 0.016 3.984 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.412 0.588 35 H 0.111 0.889 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.287 0.713 39 H 0.118 0.882 40 H 0.024 0.976 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.326 10.282 2.299 18.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.030 4.030 3 H 0.105 0.895 4 C -0.157 4.157 5 C -0.003 4.003 6 N -0.881 5.881 7 S 2.786 3.214 8 O -0.962 6.962 9 O -0.964 6.964 10 C -0.713 4.713 11 C -0.177 4.177 12 C -0.109 4.109 13 C -0.221 4.221 14 C 0.070 3.930 15 C -0.470 4.470 16 H 0.113 0.887 17 C -0.136 4.136 18 N -0.422 5.422 19 Si 0.734 3.266 20 H -0.194 1.194 21 H -0.215 1.215 22 H -0.167 1.167 23 C -0.125 4.125 24 N -0.260 5.260 25 C -0.125 4.125 26 C -0.132 4.132 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.245 0.755 35 H 0.129 0.871 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.098 0.902 39 H 0.136 0.864 40 H 0.043 0.957 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -14.302 10.463 1.631 17.795 hybrid contribution -0.296 -0.224 0.948 1.018 sum -14.598 10.239 2.579 18.016 Atomic orbital electron populations 1.22453 0.97415 1.02403 1.02253 1.21730 0.92610 0.98557 0.90152 0.89527 1.21847 0.95296 1.01537 0.97036 1.21236 0.94539 0.95954 0.88574 1.55557 1.30230 1.57332 1.44974 1.01618 0.72427 0.73494 0.73880 1.93548 1.85205 1.66378 1.51101 1.93514 1.84665 1.31720 1.86463 1.29929 1.18934 1.03771 1.18715 1.20049 1.04073 0.97296 0.96324 1.20682 0.97699 0.95261 0.97288 1.21289 1.06133 0.94506 1.00193 1.17771 0.91831 0.93222 0.90195 1.19523 1.04939 0.92017 1.30565 0.88739 1.26169 0.99988 0.96207 0.91207 1.69690 1.26133 1.19261 1.27109 0.86374 0.78408 0.81326 0.80470 1.19425 1.21454 1.16686 1.20804 1.01621 0.92254 0.97847 1.62194 1.58592 1.02901 1.02265 1.22394 0.98737 0.98648 0.92738 1.22494 0.97113 0.90384 1.03215 0.92052 0.91893 0.92538 0.90995 0.90899 0.90826 0.89840 0.75458 0.87093 0.87989 0.87663 0.90192 0.86375 0.95710 0.91285 0.91398 0.90817 0.91361 0.95340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.34 8.46 37.16 0.31 -1.03 16 2 C 0.08 0.69 2.34 -67.71 -0.16 0.53 16 3 H 0.09 0.74 8.01 -51.93 -0.42 0.33 16 4 C -0.12 -1.10 4.69 -26.73 -0.13 -1.22 16 5 C 0.12 1.52 6.14 -4.04 -0.02 1.49 16 6 N -1.12 -15.26 6.00 -10.61 -0.06 -15.33 16 7 S 2.69 48.67 5.74 -107.50 -0.62 48.06 16 8 O -0.97 -19.92 17.27 -57.17 -0.99 -20.91 16 9 O -0.97 -19.23 16.73 -57.17 -0.96 -20.19 16 10 C -0.62 -13.04 5.94 -39.66 -0.24 -13.27 16 11 C -0.16 -3.22 9.53 -39.29 -0.37 -3.59 16 12 C -0.09 -1.91 10.02 -39.66 -0.40 -2.30 16 13 C -0.20 -4.74 7.24 -38.87 -0.28 -5.02 16 14 C 0.07 1.84 5.16 -106.82 -0.55 1.29 16 15 C -0.44 -11.70 9.57 -37.74 -0.36 -12.06 16 16 H 0.09 2.59 8.06 -52.49 -0.42 2.16 16 17 C 0.08 2.16 5.40 -17.34 -0.09 2.07 16 18 N -0.80 -20.69 13.93 55.55 0.77 -19.92 16 19 Si 0.91 20.32 24.51 -169.99 -4.17 16.16 16 20 H -0.27 -5.74 6.61 56.52 0.37 -5.37 16 21 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.24 -5.65 6.92 56.52 0.39 -5.26 16 23 C -0.10 -2.42 9.26 -38.88 -0.36 -2.78 16 24 N -0.54 -5.28 4.25 -243.18 -1.03 -6.31 16 25 C 0.02 0.19 9.26 60.06 0.56 0.75 16 26 C 0.02 0.15 8.79 60.07 0.53 0.68 16 27 H 0.06 0.45 6.33 -51.93 -0.33 0.12 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.40 6.77 -51.93 -0.35 0.04 16 30 H 0.07 0.64 6.41 -51.92 -0.33 0.31 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.92 7.75 -51.93 -0.40 0.52 16 33 H 0.08 1.14 7.56 -51.93 -0.39 0.75 16 34 H 0.41 4.62 8.65 -34.47 -0.30 4.32 16 35 H 0.11 2.05 7.59 -52.49 -0.40 1.65 16 36 H 0.10 1.84 8.06 -52.48 -0.42 1.42 16 37 H 0.11 2.43 4.48 -52.49 -0.24 2.20 16 38 H 0.29 6.72 8.30 -40.82 -0.34 6.38 16 39 H 0.12 2.64 7.60 -52.49 -0.40 2.24 16 40 H 0.02 0.18 6.83 -51.93 -0.35 -0.17 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.54 8.03 -51.93 -0.42 0.12 16 43 H 0.07 0.71 6.39 -51.93 -0.33 0.37 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.03 0.23 6.22 -51.93 -0.32 -0.09 16 LS Contribution 366.47 15.07 5.52 5.52 Total: -1.00 -30.83 366.47 -9.78 -40.61 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -6.69 Total: 6.79 kcal Atomic # 6 Polarization: -32.91 SS G_CDS: -1.56 Total: -34.48 kcal Atomic # 7 Polarization: -41.23 SS G_CDS: -0.32 Total: -41.56 kcal Atomic # 8 Polarization: -39.15 SS G_CDS: -1.94 Total: -41.09 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -4.17 Total: 16.16 kcal Atomic # 16 Polarization: 48.67 SS G_CDS: -0.62 Total: 48.06 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.83 -9.78 -40.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594820708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.547 kcal (2) G-P(sol) polarization free energy of solvation -30.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds