Wall clock time and date at job start Tue Mar 31 2020 15:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47426 * 2 1 4 4 C 1.53006 * 109.46819 * 240.00338 * 2 1 3 5 5 C 1.52995 * 109.47056 * 177.63859 * 4 2 1 6 6 N 1.46499 * 109.47408 * 176.16037 * 5 4 2 7 7 S 1.65598 * 120.00647 * 165.00064 * 6 5 4 8 8 O 1.42096 * 106.40829 * 178.53823 * 7 6 5 9 9 O 1.42107 * 106.39655 * 311.46060 * 7 6 5 10 10 C 1.76198 * 107.21941 * 64.99635 * 7 6 5 11 11 C 1.38662 * 119.87693 * 269.73302 * 10 7 6 12 12 C 1.38613 * 120.50055 * 179.72215 * 11 10 7 13 13 C 1.37639 * 120.24964 * 0.54817 * 12 11 10 14 14 C 1.40698 * 119.74042 * 359.72744 * 13 12 11 15 15 C 1.41401 * 120.24226 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00248 * 152.67306 * 15 14 13 17 17 C 1.39944 * 119.99893 * 332.67575 * 15 14 13 18 18 N 1.30820 * 119.99918 * 160.18683 * 17 15 14 19 19 Si 1.86803 * 120.00076 * 340.18524 * 17 15 14 20 20 H 1.48498 * 109.46872 * 94.39441 * 19 17 15 21 21 H 1.48493 * 109.47245 * 214.39290 * 19 17 15 22 22 H 1.48494 * 109.47097 * 334.39714 * 19 17 15 23 23 C 1.37593 * 119.87703 * 90.00146 * 10 7 6 24 24 N 1.46905 * 109.47205 * 120.00656 * 2 1 3 25 25 C 1.46899 * 110.99597 * 290.98055 * 24 2 1 26 26 C 1.46901 * 110.99970 * 54.93312 * 24 2 1 27 27 H 1.08994 * 109.47426 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47068 * 59.99564 * 1 2 3 29 29 H 1.09006 * 109.46837 * 299.99520 * 1 2 3 30 30 H 1.09008 * 109.47038 * 297.63518 * 4 2 1 31 31 H 1.08995 * 109.46914 * 57.63849 * 4 2 1 32 32 H 1.09006 * 109.47183 * 296.15789 * 5 4 2 33 33 H 1.09001 * 109.47644 * 56.15656 * 5 4 2 34 34 H 0.97006 * 119.99744 * 344.99682 * 6 5 4 35 35 H 1.08001 * 119.74494 * 359.97438 * 11 10 7 36 36 H 1.08003 * 119.87591 * 180.25365 * 12 11 10 37 37 H 1.07993 * 120.13054 * 179.74699 * 13 12 11 38 38 H 0.97006 * 120.00142 * 179.97438 * 18 17 15 39 39 H 1.08001 * 120.12665 * 359.97438 * 23 10 7 40 40 H 1.08999 * 109.46996 * 65.56914 * 25 24 2 41 41 H 1.09004 * 109.46977 * 185.56946 * 25 24 2 42 42 H 1.09000 * 109.47486 * 305.56692 * 25 24 2 43 43 H 1.08999 * 109.46931 * 60.00444 * 26 24 2 44 44 H 1.09002 * 109.46525 * 180.02562 * 26 24 2 45 45 H 1.08991 * 109.47027 * 300.00213 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5687 -0.6700 -1.2795 6 7 4.0607 -1.4383 -2.4257 7 16 5.6280 -1.2614 -2.9301 8 8 5.8013 -2.1535 -4.0225 9 8 5.8640 0.1368 -3.0235 10 6 6.6633 -1.8551 -1.6338 11 6 7.1039 -0.9850 -0.6483 12 6 7.9140 -1.4394 0.3806 13 6 8.2993 -2.7599 0.4281 14 6 7.8629 -3.6507 -0.5698 15 6 8.2519 -5.0096 -0.5311 16 1 7.6215 -5.7646 -0.9769 17 6 9.4537 -5.3760 0.0851 18 7 9.6411 -6.6123 0.4699 19 14 10.7905 -4.1000 0.3582 20 1 10.6602 -3.5312 1.7237 21 1 12.1226 -4.7400 0.2136 22 1 10.6511 -3.0147 -0.6456 23 6 7.0360 -3.1793 -1.6064 24 7 2.0197 -0.6927 1.1994 25 6 1.7322 0.0862 2.4113 26 6 1.4523 -2.0443 1.2953 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8901 30 1 1.7116 -1.7605 -1.2284 31 1 1.6424 -0.2323 -2.1387 32 1 3.8959 0.3660 -1.3692 33 1 3.9649 -1.0976 -0.3584 34 1 3.4682 -2.0508 -2.8893 35 1 6.8103 0.0539 -0.6803 36 1 8.2481 -0.7537 1.1452 37 1 8.9339 -3.1110 1.2283 38 1 10.4743 -6.8664 0.8967 39 1 6.6949 -3.8546 -2.3772 40 1 0.6537 0.1442 2.5585 41 1 2.1909 -0.3994 3.2726 42 1 2.1386 1.0917 2.3020 43 1 1.7392 -2.6219 0.4166 44 1 1.8310 -2.5344 2.1922 45 1 0.3656 -1.9792 1.3485 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594820708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:57 Heat of formation + Delta-G solvation = -78.753678 kcal Electronic energy + Delta-G solvation = -26126.039693 eV Core-core repulsion = 22462.119814 eV Total energy + Delta-G solvation = -3663.919879 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.67701 -39.61171 -38.26427 -36.90871 -36.39540 -35.64353 -32.61431 -32.51997 -31.86288 -29.34940 -28.38754 -27.23129 -25.44506 -24.10958 -23.65456 -22.65015 -20.92031 -20.34840 -19.60180 -18.40331 -18.05973 -17.30137 -17.22921 -16.97323 -16.60751 -16.04593 -15.89173 -15.58048 -15.48057 -14.82128 -14.81404 -14.66573 -14.46909 -14.01407 -13.60970 -13.52201 -13.45741 -13.36172 -13.20709 -13.10077 -13.04579 -12.89104 -12.76848 -12.63492 -12.51925 -12.31602 -12.10530 -12.04238 -11.81737 -11.73645 -11.54538 -11.50782 -11.04164 -10.36228 -9.98191 -9.68499 -9.10482 -8.98363 -6.58254 -0.49808 0.21362 0.67284 1.20795 1.36380 1.43266 2.03841 2.12867 2.42770 2.77925 3.11961 3.32916 3.45625 3.88300 4.01173 4.18906 4.23735 4.29918 4.35370 4.44502 4.46334 4.52195 4.53451 4.71741 4.74440 4.77612 4.78451 4.80545 4.87813 4.93793 5.03611 5.07749 5.10848 5.14630 5.24045 5.34664 5.37084 5.41111 5.46309 5.65540 5.77021 6.00477 6.15734 6.20856 6.24150 6.24907 6.59729 6.70101 8.09693 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.013236 B = 0.003835 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.869050 B = 7298.741966 C = 8342.298444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.079 3.921 3 H 0.090 0.910 4 C -0.113 4.113 5 C 0.117 3.883 6 N -1.105 6.105 7 S 2.719 3.281 8 O -0.997 6.997 9 O -0.983 6.983 10 C -0.631 4.631 11 C -0.142 4.142 12 C -0.093 4.093 13 C -0.210 4.210 14 C 0.055 3.945 15 C -0.483 4.483 16 H 0.062 0.938 17 C 0.051 3.949 18 N -0.838 5.838 19 Si 0.957 3.043 20 H -0.248 1.248 21 H -0.273 1.273 22 H -0.257 1.257 23 C -0.125 4.125 24 N -0.556 5.556 25 C 0.024 3.976 26 C 0.017 3.983 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.425 0.575 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.108 0.892 38 H 0.297 0.703 39 H 0.113 0.887 40 H 0.034 0.966 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.060 0.940 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.402 13.308 2.809 21.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.030 4.030 3 H 0.108 0.892 4 C -0.152 4.152 5 C -0.008 4.008 6 N -0.868 5.868 7 S 2.810 3.190 8 O -0.987 6.987 9 O -0.973 6.973 10 C -0.719 4.719 11 C -0.163 4.163 12 C -0.112 4.112 13 C -0.229 4.229 14 C 0.052 3.948 15 C -0.512 4.512 16 H 0.080 0.920 17 C -0.165 4.165 18 N -0.463 5.463 19 Si 0.780 3.220 20 H -0.173 1.173 21 H -0.200 1.200 22 H -0.181 1.181 23 C -0.146 4.146 24 N -0.280 5.280 25 C -0.124 4.124 26 C -0.131 4.131 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.262 0.738 35 H 0.159 0.841 36 H 0.160 0.840 37 H 0.126 0.874 38 H 0.107 0.893 39 H 0.131 0.869 40 H 0.053 0.947 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -15.369 13.469 2.164 20.550 hybrid contribution -0.156 -0.989 0.748 1.250 sum -15.525 12.480 2.912 20.131 Atomic orbital electron populations 1.22380 0.96075 1.02516 1.02906 1.21750 0.93626 0.98382 0.89280 0.89189 1.21846 0.92867 1.02281 0.98246 1.21413 0.96703 0.95563 0.87131 1.55206 1.28355 1.57760 1.45480 1.00827 0.72864 0.72643 0.72651 1.93514 1.86023 1.67051 1.52126 1.93501 1.85399 1.32016 1.86345 1.30441 1.19030 1.02802 1.19583 1.20573 1.01999 0.98541 0.95150 1.21138 0.96965 0.94849 0.98268 1.21480 1.06181 0.95449 0.99801 1.17930 0.92631 0.92988 0.91247 1.19501 1.06146 0.92429 1.33101 0.92021 1.26794 1.01134 0.97827 0.90776 1.69708 1.27273 1.20594 1.28725 0.85631 0.76623 0.78943 0.80796 1.17289 1.19978 1.18123 1.20849 1.02386 0.93512 0.97861 1.62192 1.59341 1.03274 1.03153 1.22394 0.99376 0.98584 0.92081 1.22461 0.97847 0.90277 1.02554 0.92185 0.90901 0.92238 0.90606 0.89232 0.90501 0.91154 0.73802 0.84129 0.84048 0.87389 0.89259 0.86897 0.94750 0.91778 0.90932 0.91454 0.92096 0.94130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.08 8.46 71.98 0.61 -1.47 16 2 C 0.08 1.16 2.34 44.92 0.11 1.27 16 3 H 0.09 1.27 8.01 -2.39 -0.02 1.26 16 4 C -0.11 -1.79 4.69 30.59 0.14 -1.65 16 5 C 0.12 2.60 6.14 86.38 0.53 3.13 16 6 N -1.11 -27.74 6.00 -187.49 -1.12 -28.86 16 7 S 2.72 93.76 5.74 -56.49 -0.32 93.44 16 8 O -1.00 -40.13 17.27 -128.00 -2.21 -42.34 16 9 O -0.98 -36.17 16.73 -128.00 -2.14 -38.31 16 10 C -0.63 -25.63 5.94 22.22 0.13 -25.50 16 11 C -0.14 -5.44 9.53 22.46 0.21 -5.23 16 12 C -0.09 -3.68 10.02 22.22 0.22 -3.46 16 13 C -0.21 -9.65 7.24 22.73 0.16 -9.49 16 14 C 0.06 2.83 5.16 -21.29 -0.11 2.72 16 15 C -0.48 -26.93 9.57 23.46 0.22 -26.70 16 16 H 0.06 3.68 8.06 -2.91 -0.02 3.66 16 17 C 0.05 2.68 5.40 85.26 0.46 3.14 16 18 N -0.84 -45.02 13.93 21.83 0.30 -44.71 16 19 Si 0.96 41.72 24.51 68.60 1.68 43.41 16 20 H -0.25 -9.91 6.61 99.48 0.66 -9.25 16 21 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 22 H -0.26 -11.66 6.92 99.48 0.69 -10.97 16 23 C -0.13 -5.91 9.26 22.73 0.21 -5.70 16 24 N -0.56 -9.89 4.25 -923.27 -3.92 -13.81 16 25 C 0.02 0.35 9.26 127.69 1.18 1.53 16 26 C 0.02 0.29 8.79 127.69 1.12 1.41 16 27 H 0.06 0.72 6.33 -2.39 -0.02 0.70 16 28 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.06 0.66 6.77 -2.38 -0.02 0.65 16 30 H 0.08 1.16 6.41 -2.38 -0.02 1.15 16 31 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.08 1.69 7.75 -2.38 -0.02 1.67 16 33 H 0.07 1.78 7.56 -2.39 -0.02 1.76 16 34 H 0.43 8.65 8.65 -96.74 -0.84 7.81 16 35 H 0.14 4.57 7.59 -2.91 -0.02 4.55 16 36 H 0.14 4.44 8.06 -2.91 -0.02 4.41 16 37 H 0.11 4.86 4.48 -2.91 -0.01 4.84 16 38 H 0.30 14.23 8.30 -92.70 -0.77 13.46 16 39 H 0.11 5.29 7.60 -2.91 -0.02 5.27 16 40 H 0.03 0.44 6.83 -2.39 -0.02 0.42 16 41 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 42 H 0.07 0.99 8.03 -2.39 -0.02 0.97 16 43 H 0.07 1.22 6.39 -2.39 -0.02 1.20 16 44 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.04 0.58 6.22 -2.39 -0.01 0.57 16 Total: -1.00 -67.21 366.47 -2.43 -69.64 By element: Atomic # 1 Polarization: 27.45 SS G_CDS: 0.10 Total: 27.55 kcal Atomic # 6 Polarization: -71.20 SS G_CDS: 5.21 Total: -65.98 kcal Atomic # 7 Polarization: -82.65 SS G_CDS: -4.74 Total: -87.39 kcal Atomic # 8 Polarization: -76.30 SS G_CDS: -4.35 Total: -80.65 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 1.68 Total: 43.41 kcal Atomic # 16 Polarization: 93.76 SS G_CDS: -0.32 Total: 93.44 kcal Total: -67.21 -2.43 -69.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594820708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.117 kcal (2) G-P(sol) polarization free energy of solvation -67.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds