Wall clock time and date at job start Tue Mar 31 2020 15:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47126 * 2 1 4 4 N 1.46500 * 109.47048 * 119.99613 * 2 1 3 5 5 C 1.34776 * 120.00419 * 275.00568 * 4 2 1 6 6 O 1.21611 * 119.99536 * 359.97438 * 5 4 2 7 7 C 1.47423 * 120.00344 * 180.02562 * 5 4 2 8 8 C 1.39228 * 120.28156 * 354.90692 * 7 5 4 9 9 C 1.38225 * 120.09299 * 180.27780 * 8 7 5 10 10 C 1.38830 * 120.67276 * 359.48410 * 9 8 7 11 11 C 1.37597 * 120.56984 * 0.51549 * 10 9 8 12 12 C 1.40700 * 119.88225 * 359.74959 * 11 10 9 13 13 C 1.40889 * 120.32539 * 180.02562 * 12 11 10 14 14 H 1.08008 * 120.00080 * 141.29906 * 13 12 11 15 15 C 1.40275 * 119.99921 * 321.29330 * 13 12 11 16 16 N 1.30629 * 119.99875 * 174.57531 * 15 13 12 17 17 Si 1.86800 * 120.00059 * 354.57746 * 15 13 12 18 18 H 1.48493 * 109.47045 * 89.15896 * 17 15 13 19 19 H 1.48501 * 109.46896 * 209.15845 * 17 15 13 20 20 H 1.48498 * 109.46926 * 329.15654 * 17 15 13 21 21 C 1.50703 * 109.47436 * 240.00043 * 2 1 3 22 22 N 1.30502 * 126.36813 * 284.68983 * 21 2 1 23 23 N 1.28570 * 109.66705 * 179.88747 * 22 21 2 24 24 C 1.30681 * 109.63315 * 0.48392 * 23 22 21 25 25 N 1.35164 * 107.33238 * 359.60832 * 24 23 22 26 26 C 1.46802 * 111.15267 * 180.23462 * 25 24 23 27 27 C 1.54431 * 105.55404 * 342.93714 * 26 25 24 28 28 C 1.51334 * 142.71955 * 179.47198 * 24 23 22 29 29 H 1.08996 * 109.46647 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47363 * 300.00486 * 1 2 3 31 31 H 1.09004 * 109.46863 * 60.00255 * 1 2 3 32 32 H 0.97007 * 119.99552 * 95.00034 * 4 2 1 33 33 H 1.08003 * 119.95202 * 359.97438 * 8 7 5 34 34 H 1.08000 * 119.66089 * 179.72117 * 9 8 7 35 35 H 1.08000 * 119.70865 * 180.28274 * 10 9 8 36 36 H 1.08003 * 120.05597 * 179.76737 * 11 10 9 37 37 H 0.96999 * 119.99841 * 179.97438 * 16 15 13 38 38 H 1.08999 * 110.23148 * 101.95463 * 26 25 24 39 39 H 1.09001 * 110.23528 * 223.91780 * 26 25 24 40 40 H 1.09003 * 110.95756 * 267.48844 * 27 26 25 41 41 H 1.08994 * 110.96328 * 143.74950 * 27 26 25 42 42 H 1.08999 * 110.47592 * 315.27283 * 28 24 23 43 43 H 1.09005 * 110.46747 * 77.74702 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8581 1.1618 2.4116 7 6 2.6389 -0.7130 3.5608 8 6 2.8717 -2.0854 3.5334 9 6 3.3275 -2.7338 4.6658 10 6 3.5685 -2.0285 5.8371 11 6 3.3479 -0.6716 5.8949 12 6 2.8788 0.0114 4.7577 13 6 2.6502 1.4008 4.8064 14 1 2.9013 2.0195 3.9574 15 6 2.0963 1.9806 5.9573 16 7 1.9823 3.2789 6.0444 17 14 1.5218 0.8960 7.3655 18 1 2.6491 0.6651 8.3042 19 1 0.4085 1.5663 8.0842 20 1 1.0511 -0.4057 6.8276 21 6 2.0324 -0.7104 -1.2305 22 7 2.0392 -1.9999 -1.4310 23 7 2.5359 -2.2551 -2.5891 24 6 2.8782 -1.1387 -3.1758 25 7 2.5670 -0.1290 -2.3328 26 6 2.9140 1.1732 -2.9151 27 6 3.8907 0.8631 -4.0705 28 6 3.4917 -0.5831 -4.4427 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 2.2490 -1.6318 1.1526 33 1 2.6912 -2.6449 2.6274 34 1 3.5014 -3.7993 4.6381 35 1 3.9289 -2.5501 6.7114 36 1 3.5346 -0.1318 6.8115 37 1 1.5989 3.6798 6.8402 38 1 2.0200 1.6647 -3.2990 39 1 3.4000 1.8022 -2.1693 40 1 4.9249 0.9066 -3.7289 41 1 3.7299 1.5402 -4.9093 42 1 4.3718 -1.1607 -4.7253 43 1 2.7610 -0.5828 -5.2517 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601010437.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:17 Heat of formation + Delta-G solvation = 77.363708 kcal Electronic energy + Delta-G solvation = -27215.807715 eV Core-core repulsion = 23455.506393 eV Total energy + Delta-G solvation = -3760.301321 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.53791 -39.21854 -37.58139 -37.17872 -35.14944 -33.63297 -32.44176 -31.08991 -30.46760 -29.74853 -29.10598 -27.72172 -25.42837 -24.07555 -22.93033 -22.30597 -21.34772 -21.17493 -20.17337 -19.45244 -17.69429 -17.31323 -17.08548 -16.12327 -15.76425 -15.34866 -14.92697 -14.56859 -14.20032 -14.08367 -14.04747 -13.81238 -13.69763 -13.57296 -13.33261 -12.77005 -12.67583 -12.42557 -12.13011 -11.98863 -11.91343 -11.84076 -11.59570 -11.46584 -11.31413 -10.93501 -10.72557 -10.46587 -10.41262 -10.25688 -10.10845 -9.78413 -9.27646 -9.17805 -8.60632 -8.53140 -7.82457 -7.59107 -6.88124 -4.47489 1.62001 2.08056 2.21698 2.60394 2.72595 3.09661 3.18204 3.29710 3.42375 3.76999 3.91062 3.97597 3.98183 4.14231 4.23940 4.37426 4.59793 4.85097 4.93263 5.01519 5.11657 5.24725 5.25989 5.38077 5.40405 5.43041 5.59899 5.81146 5.81319 5.90718 5.99914 6.03472 6.10616 6.32234 6.39452 6.50742 6.63342 6.78914 6.97363 7.10778 7.22009 7.38972 7.58562 7.73193 8.00412 8.26410 8.46768 8.61400 8.63886 8.82027 9.25637 10.10161 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.018546 B = 0.003296 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.412314 B = 8492.765708 C = 9266.068355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.239 3.761 3 H 0.098 0.902 4 N -0.736 5.736 5 C 0.565 3.435 6 O -0.525 6.525 7 C -0.246 4.246 8 C -0.041 4.041 9 C -0.249 4.249 10 C -0.065 4.065 11 C -0.226 4.226 12 C 0.120 3.880 13 C -0.398 4.398 14 H 0.114 0.886 15 C 0.079 3.921 16 N -0.799 5.799 17 Si 0.907 3.093 18 H -0.268 1.268 19 H -0.290 1.290 20 H -0.242 1.242 21 C 0.198 3.802 22 N -0.278 5.278 23 N -0.280 5.280 24 C 0.150 3.850 25 N -0.488 5.488 26 C 0.098 3.902 27 C -0.128 4.128 28 C -0.038 4.038 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.057 0.943 32 H 0.401 0.599 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.286 0.714 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.105 0.895 42 H 0.102 0.898 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.562 -2.633 -17.321 17.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.131 3.869 3 H 0.116 0.884 4 N -0.393 5.393 5 C 0.359 3.641 6 O -0.402 6.402 7 C -0.251 4.251 8 C -0.060 4.060 9 C -0.269 4.269 10 C -0.083 4.083 11 C -0.245 4.245 12 C 0.115 3.885 13 C -0.425 4.425 14 H 0.132 0.868 15 C -0.140 4.140 16 N -0.423 5.423 17 Si 0.734 3.266 18 H -0.194 1.194 19 H -0.217 1.217 20 H -0.165 1.165 21 C -0.069 4.069 22 N -0.118 5.118 23 N -0.120 5.120 24 C -0.118 4.118 25 N -0.180 5.180 26 C -0.024 4.024 27 C -0.167 4.167 28 C -0.078 4.078 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.076 0.924 32 H 0.237 0.763 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.124 0.876 37 H 0.097 0.903 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.109 0.891 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.016 -2.870 -16.792 17.066 hybrid contribution 0.007 0.476 0.479 0.675 sum 1.023 -2.395 -16.313 16.519 Atomic orbital electron populations 1.22161 0.93308 1.03169 1.02807 1.18842 0.94337 0.95264 0.78504 0.88388 1.46037 1.70614 1.14349 1.08308 1.18384 0.77056 0.86449 0.82242 1.90765 1.49952 1.15422 1.84021 1.19384 1.17145 0.92833 0.95738 1.20858 0.95105 0.93382 0.96618 1.20335 1.13935 0.98248 0.94356 1.20764 0.96962 0.94059 0.96542 1.21189 1.09235 0.94673 0.99428 1.17548 0.88084 0.93184 0.89658 1.19917 1.30616 0.91259 1.00744 0.86834 1.26281 0.93825 0.95245 0.98644 1.69541 1.32577 1.11547 1.28659 0.86405 0.78438 0.81719 0.80085 1.19447 1.21724 1.16546 1.24680 1.00911 0.90511 0.90794 1.74376 1.18052 1.09993 1.09383 1.73989 1.14873 1.21591 1.01583 1.25966 1.03793 0.85920 0.96108 1.47162 1.45643 1.10614 1.14589 1.22487 1.00560 0.82565 0.96777 1.22817 1.00035 0.96103 0.97717 1.20640 1.01485 0.94646 0.91016 0.91497 0.90159 0.92399 0.76255 0.88387 0.88349 0.88468 0.87636 0.90337 0.88475 0.88175 0.89069 0.87659 0.87932 0.88123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.47 37.16 0.35 -1.90 16 2 C 0.24 3.80 3.12 -69.08 -0.22 3.58 16 3 H 0.10 1.60 7.58 -51.93 -0.39 1.21 16 4 N -0.74 -13.53 5.02 -56.01 -0.28 -13.81 16 5 C 0.57 12.79 7.69 -12.52 -0.10 12.70 16 6 O -0.52 -13.48 13.33 5.27 0.07 -13.41 16 7 C -0.25 -5.82 5.92 -104.37 -0.62 -6.44 16 8 C -0.04 -0.84 9.52 -39.22 -0.37 -1.22 16 9 C -0.25 -5.02 10.03 -39.37 -0.39 -5.42 16 10 C -0.06 -1.36 10.01 -39.60 -0.40 -1.75 16 11 C -0.23 -5.36 6.94 -38.89 -0.27 -5.63 16 12 C 0.12 3.08 5.04 -106.54 -0.54 2.55 16 13 C -0.40 -11.08 8.08 -37.81 -0.31 -11.39 16 14 H 0.11 3.47 6.36 -52.48 -0.33 3.13 16 15 C 0.08 2.12 5.51 -17.30 -0.10 2.03 16 16 N -0.80 -21.70 13.92 55.56 0.77 -20.93 16 17 Si 0.91 20.85 24.49 -169.99 -4.16 16.69 16 18 H -0.27 -5.86 6.70 56.52 0.38 -5.48 16 19 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.24 -5.72 6.68 56.52 0.38 -5.34 16 21 C 0.20 2.98 7.09 -154.89 -1.10 1.89 16 22 N -0.28 -4.71 11.92 32.82 0.39 -4.31 16 23 N -0.28 -4.49 12.22 32.92 0.40 -4.09 16 24 C 0.15 1.82 8.69 -154.84 -1.35 0.48 16 25 N -0.49 -5.86 3.62 -109.38 -0.40 -6.26 16 26 C 0.10 0.70 7.77 -3.13 -0.02 0.67 16 27 C -0.13 -0.55 7.17 -25.15 -0.18 -0.73 16 28 C -0.04 -0.24 6.85 -26.74 -0.18 -0.42 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.40 7.02 6.41 -40.82 -0.26 6.76 16 33 H 0.10 1.75 6.43 -52.48 -0.34 1.41 16 34 H 0.10 1.71 8.06 -52.49 -0.42 1.28 16 35 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 36 H 0.11 2.45 4.89 -52.48 -0.26 2.20 16 37 H 0.29 7.00 8.29 -40.82 -0.34 6.66 16 38 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.10 0.16 8.14 -51.93 -0.42 -0.27 16 42 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 353.26 15.07 5.32 5.32 Total: -1.00 -33.72 353.26 -9.08 -42.79 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -5.41 Total: 9.01 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -5.78 Total: -11.00 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: 0.89 Total: -49.40 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: 0.07 Total: -13.41 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.16 Total: 16.69 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.72 -9.08 -42.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601010437.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.157 kcal (2) G-P(sol) polarization free energy of solvation -33.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds