Wall clock time and date at job start Tue Mar 31 2020 15:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09006 * 109.46738 * 2 1 4 4 N 1.46491 * 109.46929 * 240.00116 * 2 1 3 5 5 C 1.34783 * 120.00242 * 85.00469 * 4 2 1 6 6 O 1.21610 * 119.99613 * 359.97438 * 5 4 2 7 7 C 1.47433 * 120.00038 * 180.02562 * 5 4 2 8 8 C 1.39224 * 120.28219 * 355.36734 * 7 5 4 9 9 C 1.38218 * 120.08837 * 180.02562 * 8 7 5 10 10 C 1.38822 * 120.67861 * 0.02562 * 9 8 7 11 11 C 1.37595 * 120.57000 * 0.02562 * 10 9 8 12 12 C 1.40701 * 119.88114 * 359.67704 * 11 10 9 13 13 C 1.40900 * 120.33003 * 180.30035 * 12 11 10 14 14 H 1.08001 * 119.99656 * 215.84550 * 13 12 11 15 15 C 1.40272 * 119.99948 * 35.84059 * 13 12 11 16 16 N 1.30631 * 120.00068 * 8.98634 * 15 13 12 17 17 Si 1.86798 * 120.00068 * 188.97954 * 15 13 12 18 18 H 1.48506 * 109.46807 * 60.00385 * 17 15 13 19 19 H 1.48496 * 109.47175 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47375 * 300.00491 * 17 15 13 21 21 C 1.50701 * 109.46843 * 119.99791 * 2 1 3 22 22 N 1.30498 * 126.36838 * 75.03181 * 21 2 1 23 23 N 1.28572 * 109.66699 * 179.97438 * 22 21 2 24 24 C 1.30675 * 109.63556 * 359.96281 * 23 22 21 25 25 N 1.35172 * 107.33196 * 359.86718 * 24 23 22 26 26 C 1.46798 * 111.15109 * 180.02562 * 25 24 23 27 27 C 1.54429 * 105.55392 * 17.23163 * 26 25 24 28 28 C 1.51341 * 142.72107 * 180.26206 * 24 23 22 29 29 H 1.08998 * 109.47047 * 59.99846 * 1 2 3 30 30 H 1.08998 * 109.46913 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46869 * 300.00130 * 1 2 3 32 32 H 0.97003 * 120.00463 * 264.72002 * 4 2 1 33 33 H 1.07995 * 119.95403 * 0.02562 * 8 7 5 34 34 H 1.08002 * 119.66099 * 179.97438 * 9 8 7 35 35 H 1.08004 * 119.71783 * 179.97438 * 10 9 8 36 36 H 1.08010 * 120.06010 * 179.97438 * 11 10 9 37 37 H 0.96998 * 119.99814 * 179.97438 * 16 15 13 38 38 H 1.09000 * 110.22947 * 136.25008 * 26 25 24 39 39 H 1.09003 * 110.23170 * 258.12103 * 26 25 24 40 40 H 1.08997 * 110.95938 * 92.50895 * 27 26 25 41 41 H 1.09004 * 110.95558 * 216.20853 * 27 26 25 42 42 H 1.08999 * 110.46895 * 282.13796 * 28 24 23 43 43 H 1.08993 * 110.47696 * 44.74846 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1961 5 6 2.1472 -0.0182 -2.3571 6 8 1.8576 1.1617 -2.4118 7 6 2.6380 -0.7133 -3.5611 8 6 3.0611 -2.0375 -3.4837 9 6 3.5210 -2.6852 -4.6148 10 6 3.5681 -2.0287 -5.8371 11 6 3.1578 -0.7198 -5.9447 12 6 2.6794 -0.0396 -4.8097 13 6 2.2509 1.2989 -4.9105 14 1 2.4311 1.9862 -4.0971 15 6 1.5903 1.7387 -6.0671 16 7 1.2161 0.8757 -6.9736 17 14 1.2456 3.5583 -6.3111 18 1 2.5277 4.3076 -6.3234 19 1 0.5416 3.7598 -7.6030 20 1 0.3932 4.0539 -5.2008 21 6 2.0324 -0.7104 1.2305 22 7 2.0344 -1.9995 1.4332 23 7 2.5353 -2.2550 2.5894 24 6 2.8764 -1.1386 3.1766 25 7 2.5707 -0.1292 2.3311 26 6 2.9226 1.1726 2.9113 27 6 3.8997 0.8610 4.0658 28 6 3.4884 -0.5828 4.4443 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.2529 -1.6307 -1.1517 33 1 3.0298 -2.5592 -2.5387 34 1 3.8479 -3.7123 -4.5468 35 1 3.9307 -2.5496 -6.7110 36 1 3.1983 -0.2169 -6.8997 37 1 0.7590 1.1798 -7.7733 38 1 3.4096 1.7990 2.1640 39 1 2.0304 1.6682 3.2942 40 1 4.9336 0.9006 3.7230 41 1 3.7425 1.5402 4.9037 42 1 2.7565 -0.5812 5.2520 43 1 4.3688 -1.1597 4.7274 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601010438.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:19 Heat of formation + Delta-G solvation = 53.766449 kcal Electronic energy + Delta-G solvation = -27149.791327 eV Core-core repulsion = 23388.466752 eV Total energy + Delta-G solvation = -3761.324575 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.51938 -40.84909 -38.79430 -38.23323 -36.65634 -35.55641 -33.51333 -32.31542 -31.68946 -30.81114 -30.30832 -28.50351 -27.33489 -25.41563 -24.06229 -23.31990 -22.74355 -22.21126 -21.41639 -20.98917 -19.43391 -18.43492 -18.00731 -17.28296 -17.15248 -16.92566 -16.07565 -15.88219 -15.75862 -15.48684 -15.23395 -15.02284 -14.68647 -14.48434 -14.31081 -14.15895 -14.04438 -13.81813 -13.43618 -13.19639 -12.89749 -12.84368 -12.73247 -12.54669 -12.50372 -12.45412 -12.31855 -12.23164 -11.94697 -11.50580 -11.45748 -11.13348 -11.06781 -10.39006 -10.18955 -10.09157 -9.43815 -9.23554 -8.67467 -6.37891 0.47433 0.63415 1.00797 1.34996 1.35627 1.46804 1.51759 1.65563 2.21517 2.26482 2.40968 2.67152 2.79498 3.10690 3.42307 3.67148 3.71316 3.86669 3.93479 4.02639 4.30648 4.31839 4.33134 4.40592 4.50097 4.52506 4.57104 4.71512 4.77945 4.82658 4.89661 4.98165 5.06368 5.08082 5.09315 5.16179 5.23308 5.32290 5.49892 5.59687 5.76029 5.80531 6.02851 6.09290 6.32354 6.57943 6.74850 6.89254 6.97646 7.53437 7.59842 8.30781 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015584 B = 0.003374 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.322957 B = 8296.464932 C = 9406.691378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.242 3.758 3 H 0.094 0.906 4 N -0.724 5.724 5 C 0.569 3.431 6 O -0.568 6.568 7 C -0.280 4.280 8 C -0.056 4.056 9 C -0.237 4.237 10 C -0.090 4.090 11 C -0.174 4.174 12 C 0.121 3.879 13 C -0.461 4.461 14 H 0.091 0.909 15 C 0.032 3.968 16 N -0.823 5.823 17 Si 0.981 3.019 18 H -0.257 1.257 19 H -0.262 1.262 20 H -0.270 1.270 21 C 0.183 3.817 22 N -0.309 5.309 23 N -0.329 5.329 24 C 0.160 3.840 25 N -0.488 5.488 26 C 0.082 3.918 27 C -0.112 4.112 28 C -0.037 4.037 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.405 0.595 33 H 0.119 0.881 34 H 0.129 0.871 35 H 0.122 0.878 36 H 0.101 0.899 37 H 0.290 0.710 38 H 0.099 0.901 39 H 0.119 0.881 40 H 0.094 0.906 41 H 0.145 0.855 42 H 0.127 0.873 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.684 2.827 20.921 21.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.135 3.865 3 H 0.112 0.888 4 N -0.378 5.378 5 C 0.363 3.637 6 O -0.449 6.449 7 C -0.285 4.285 8 C -0.075 4.075 9 C -0.256 4.256 10 C -0.109 4.109 11 C -0.193 4.193 12 C 0.117 3.883 13 C -0.490 4.490 14 H 0.109 0.891 15 C -0.183 4.183 16 N -0.449 5.449 17 Si 0.802 3.198 18 H -0.181 1.181 19 H -0.186 1.186 20 H -0.195 1.195 21 C -0.085 4.085 22 N -0.149 5.149 23 N -0.170 5.170 24 C -0.109 4.109 25 N -0.180 5.180 26 C -0.038 4.038 27 C -0.150 4.150 28 C -0.077 4.077 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.242 0.758 33 H 0.137 0.863 34 H 0.147 0.853 35 H 0.140 0.860 36 H 0.119 0.881 37 H 0.100 0.900 38 H 0.117 0.883 39 H 0.137 0.863 40 H 0.112 0.888 41 H 0.163 0.837 42 H 0.145 0.855 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.093 2.259 20.292 20.651 hybrid contribution -0.195 1.213 -0.597 1.365 sum 2.898 3.471 19.696 20.208 Atomic orbital electron populations 1.22065 0.92491 1.03020 1.02989 1.18857 0.94971 0.94746 0.77968 0.88790 1.45843 1.69380 1.14406 1.08207 1.18335 0.76445 0.85959 0.82947 1.90617 1.52475 1.17076 1.84768 1.19762 1.18345 0.95907 0.94524 1.21021 0.95728 0.92598 0.98139 1.20769 1.11389 1.00660 0.92739 1.21170 0.97870 0.94213 0.97602 1.21303 1.03777 0.95762 0.98506 1.17825 0.86991 0.93075 0.90432 1.20248 1.30977 0.96371 1.01386 0.89119 1.26854 0.93443 1.04294 0.93739 1.69744 1.28738 1.37980 1.08465 0.85276 0.79508 0.76791 0.78246 1.18106 1.18578 1.19481 1.24282 1.02190 0.90466 0.91552 1.74267 1.18912 1.11243 1.10515 1.73870 1.17144 1.23883 1.02071 1.27054 1.01437 0.84922 0.97486 1.47473 1.44533 1.12513 1.13455 1.23019 1.02404 0.80651 0.97715 1.22947 0.99156 0.95339 0.97542 1.21083 1.02256 0.95552 0.88762 0.92287 0.91874 0.89672 0.75824 0.86308 0.85308 0.86037 0.88079 0.89975 0.88296 0.86278 0.88762 0.83743 0.85515 0.86546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.41 9.47 71.98 0.68 -3.73 16 2 C 0.24 7.89 3.12 44.25 0.14 8.03 16 3 H 0.09 3.10 7.58 -2.38 -0.02 3.08 16 4 N -0.72 -27.93 5.02 -449.35 -2.26 -30.18 16 5 C 0.57 27.17 7.69 86.66 0.67 27.83 16 6 O -0.57 -30.06 13.19 -4.06 -0.05 -30.11 16 7 C -0.28 -14.21 5.92 -19.70 -0.12 -14.33 16 8 C -0.06 -2.46 9.52 22.50 0.21 -2.24 16 9 C -0.24 -9.90 10.03 22.40 0.22 -9.67 16 10 C -0.09 -4.03 10.01 22.26 0.22 -3.81 16 11 C -0.17 -9.12 8.62 22.72 0.20 -8.93 16 12 C 0.12 6.73 5.48 -21.11 -0.12 6.61 16 13 C -0.46 -26.40 7.78 23.42 0.18 -26.22 16 14 H 0.09 5.39 5.73 -2.91 -0.02 5.37 16 15 C 0.03 1.68 5.25 85.37 0.45 2.13 16 16 N -0.82 -44.08 11.25 21.88 0.25 -43.83 16 17 Si 0.98 41.04 29.57 68.60 2.03 43.07 16 18 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 19 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 20 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 21 C 0.18 5.56 7.09 137.95 0.98 6.54 16 22 N -0.31 -10.73 11.92 -50.10 -0.60 -11.33 16 23 N -0.33 -10.61 12.22 -49.74 -0.61 -11.21 16 24 C 0.16 3.63 8.69 138.24 1.20 4.84 16 25 N -0.49 -11.01 3.62 -499.98 -1.81 -12.83 16 26 C 0.08 0.91 7.77 86.81 0.67 1.58 16 27 C -0.11 -0.45 7.18 31.70 0.23 -0.22 16 28 C -0.04 -0.32 6.86 30.67 0.21 -0.11 16 29 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 32 H 0.41 15.02 6.41 -92.71 -0.59 14.43 16 33 H 0.12 4.46 6.42 -2.91 -0.02 4.44 16 34 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 35 H 0.12 4.63 8.06 -2.91 -0.02 4.61 16 36 H 0.10 5.47 6.72 -2.91 -0.02 5.45 16 37 H 0.29 14.02 8.29 -92.71 -0.77 13.25 16 38 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 41 H 0.14 -0.46 8.14 -2.38 -0.02 -0.48 16 42 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -77.30 359.15 3.44 -73.85 By element: Atomic # 1 Polarization: 33.82 SS G_CDS: 0.46 Total: 34.29 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: 6.03 Total: -11.71 kcal Atomic # 7 Polarization: -104.36 SS G_CDS: -5.03 Total: -109.38 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -0.05 Total: -30.11 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Total: -77.30 3.44 -73.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601010438.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.621 kcal (2) G-P(sol) polarization free energy of solvation -77.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds