Wall clock time and date at job start Tue Mar 31 2020 15:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47433 * 2 1 4 4 C 1.52999 * 109.47352 * 120.00531 * 2 1 3 5 5 C 1.52994 * 109.47225 * 185.00118 * 4 2 1 6 6 N 1.46506 * 109.47339 * 179.97438 * 5 4 2 7 7 S 1.65593 * 120.00027 * 163.54261 * 6 5 4 8 8 O 1.42098 * 106.40580 * 309.34093 * 7 6 5 9 9 O 1.42108 * 106.40042 * 176.41860 * 7 6 5 10 10 C 1.76196 * 107.21865 * 62.88511 * 7 6 5 11 11 C 1.37644 * 120.12501 * 244.62403 * 10 7 6 12 12 C 1.38615 * 120.24901 * 179.97438 * 11 10 7 13 13 C 1.38656 * 120.49881 * 0.02562 * 12 11 10 14 14 C 1.37597 * 120.25049 * 0.02562 * 13 12 11 15 15 C 1.40692 * 120.13184 * 64.34676 * 10 7 6 16 16 C 1.41395 * 120.24273 * 359.97438 * 15 10 7 17 17 H 1.08006 * 120.00192 * 331.39649 * 16 15 10 18 18 C 1.39951 * 120.00135 * 151.40422 * 16 15 10 19 19 N 1.30822 * 119.99846 * 348.39596 * 18 16 15 20 20 Si 1.86799 * 119.99846 * 168.40248 * 18 16 15 21 21 H 1.48492 * 109.47525 * 359.97438 * 20 18 16 22 22 H 1.48506 * 109.46759 * 119.99858 * 20 18 16 23 23 H 1.48498 * 109.47014 * 239.99403 * 20 18 16 24 24 N 1.46908 * 109.46938 * 240.00534 * 2 1 3 25 25 C 1.46899 * 111.00000 * 306.04139 * 24 2 1 26 26 C 1.46900 * 110.99987 * 69.99886 * 24 2 1 27 27 H 1.09003 * 109.46982 * 59.99685 * 1 2 3 28 28 H 1.09001 * 109.47174 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46998 * 299.99358 * 1 2 3 30 30 H 1.09006 * 109.47083 * 64.99957 * 4 2 1 31 31 H 1.08995 * 109.46792 * 305.00184 * 4 2 1 32 32 H 1.08996 * 109.47708 * 59.99748 * 5 4 2 33 33 H 1.09005 * 109.47281 * 299.99779 * 5 4 2 34 34 H 0.97000 * 119.99313 * 343.54378 * 6 5 4 35 35 H 1.07999 * 119.87934 * 359.97438 * 11 10 7 36 36 H 1.07991 * 119.75128 * 179.97438 * 12 11 10 37 37 H 1.08007 * 119.87645 * 180.02562 * 13 12 11 38 38 H 1.07999 * 120.12789 * 179.97438 * 14 13 12 39 39 H 0.97001 * 119.99922 * 180.02562 * 19 18 16 40 40 H 1.09002 * 109.46660 * 60.00171 * 25 24 2 41 41 H 1.08996 * 109.47155 * 179.97438 * 25 24 2 42 42 H 1.08996 * 109.47338 * 300.00836 * 25 24 2 43 43 H 1.09000 * 109.46951 * 59.99805 * 26 24 2 44 44 H 1.08997 * 109.46941 * 179.97438 * 26 24 2 45 45 H 1.09000 * 109.47025 * 299.99960 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5648 -0.6134 1.3136 6 7 4.0532 -1.3036 2.5100 7 16 5.6543 -1.7062 2.6380 8 8 5.9947 -2.3849 1.4369 9 8 5.8224 -2.2778 3.9282 10 6 6.5721 -0.2022 2.6370 11 6 7.4402 0.0767 1.6058 12 6 8.1631 1.2594 1.6021 13 6 8.0216 2.1739 2.6347 14 6 7.1604 1.9155 3.6763 15 6 6.4161 0.7211 3.6871 16 6 5.5226 0.4483 4.7484 17 1 4.6541 -0.1707 4.5775 18 6 5.7633 0.9805 6.0202 19 7 6.9172 1.5350 6.2895 20 14 4.4371 0.8988 7.3331 21 1 3.2335 0.2277 6.7800 22 1 4.9415 0.1295 8.4990 23 1 4.0820 2.2748 7.7642 24 7 2.0196 -0.6924 -1.1996 25 6 1.4343 -2.0354 -1.3080 26 6 1.7528 0.0974 -2.4091 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.7517 -1.7717 1.2054 31 1 1.6054 -0.2619 2.1368 32 1 3.8532 0.4368 1.3573 33 1 3.9995 -1.0728 0.4258 34 1 3.4386 -1.5246 3.2272 35 1 7.5585 -0.6286 0.7966 36 1 8.8422 1.4698 0.7893 37 1 8.5895 3.0925 2.6214 38 1 7.0520 2.6290 4.4798 39 1 7.0842 1.9035 7.1711 40 1 0.3490 -1.9548 -1.3695 41 1 1.8133 -2.5256 -2.2047 42 1 1.7059 -2.6220 -0.4304 43 1 2.2560 1.0612 -2.3320 44 1 2.1258 -0.4380 -3.2822 45 1 0.6791 0.2552 -2.5105 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601464447.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:07 Heat of formation + Delta-G solvation = -58.448795 kcal Electronic energy + Delta-G solvation = -26697.513089 eV Core-core repulsion = 23034.473696 eV Total energy + Delta-G solvation = -3663.039393 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -38.76711 -37.54260 -36.12996 -35.04285 -34.73770 -33.84164 -31.63149 -30.17829 -29.50479 -28.31776 -27.61350 -25.50415 -24.59263 -22.48806 -21.60223 -21.08132 -19.75559 -18.42467 -17.66301 -16.71212 -16.40150 -16.12569 -15.46164 -15.27314 -14.93591 -14.84763 -14.32632 -14.06422 -13.81769 -13.62633 -13.24183 -13.10148 -12.73413 -12.61739 -12.40959 -12.09810 -11.89639 -11.82216 -11.65149 -11.47783 -11.42392 -11.24537 -11.13275 -11.10192 -10.99016 -10.91657 -10.76960 -10.68431 -10.52205 -10.42674 -9.85563 -9.42312 -9.34586 -8.64378 -8.32360 -7.98291 -7.55421 -6.99482 -4.72108 1.64077 2.38662 2.75853 2.98152 3.03905 3.13110 3.79210 3.89068 4.03254 4.44676 4.74627 4.81711 4.90923 5.06653 5.16453 5.22470 5.34832 5.40800 5.43950 5.45221 5.49693 5.65141 5.73040 5.78129 5.81652 5.86132 6.01726 6.04338 6.09197 6.19706 6.29054 6.36529 6.44916 6.61665 6.82371 6.99090 7.00279 7.00696 7.13595 7.35661 7.54076 7.63759 7.74546 7.85476 7.93945 8.33284 8.54240 8.69597 9.93551 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.011949 B = 0.004563 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.790105 B = 6134.568888 C = 6888.791045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.079 3.921 3 H 0.087 0.913 4 C -0.118 4.118 5 C 0.130 3.870 6 N -1.124 6.124 7 S 2.702 3.298 8 O -0.997 6.997 9 O -0.968 6.968 10 C -0.773 4.773 11 C -0.002 4.002 12 C -0.250 4.250 13 C -0.077 4.077 14 C -0.159 4.159 15 C 0.186 3.814 16 C -0.447 4.447 17 H 0.088 0.912 18 C 0.080 3.920 19 N -0.778 5.778 20 Si 0.916 3.084 21 H -0.255 1.255 22 H -0.269 1.269 23 H -0.270 1.270 24 N -0.537 5.537 25 C 0.016 3.984 26 C 0.023 3.977 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.408 0.592 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.125 0.875 39 H 0.286 0.714 40 H 0.028 0.972 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.926 0.100 -8.764 14.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.030 4.030 3 H 0.105 0.895 4 C -0.157 4.157 5 C 0.004 3.996 6 N -0.881 5.881 7 S 2.799 3.201 8 O -0.988 6.988 9 O -0.959 6.959 10 C -0.868 4.868 11 C -0.022 4.022 12 C -0.271 4.271 13 C -0.096 4.096 14 C -0.179 4.179 15 C 0.182 3.818 16 C -0.475 4.475 17 H 0.106 0.894 18 C -0.141 4.141 19 N -0.401 5.401 20 Si 0.740 3.260 21 H -0.179 1.179 22 H -0.194 1.194 23 H -0.195 1.195 24 N -0.260 5.260 25 C -0.132 4.132 26 C -0.126 4.126 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.241 0.759 35 H 0.126 0.874 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.142 0.858 39 H 0.097 0.903 40 H 0.046 0.954 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -10.835 -0.696 -8.630 13.869 hybrid contribution -1.414 0.917 0.844 1.885 sum -12.249 0.221 -7.785 14.516 Atomic orbital electron populations 1.22448 0.97543 1.02253 1.02210 1.21736 0.92476 0.98684 0.90107 0.89456 1.21850 0.95854 1.01202 0.96802 1.21066 0.94144 0.97168 0.87212 1.55662 1.28216 1.76442 1.27763 1.01023 0.72084 0.74459 0.72548 1.93447 1.83238 1.73051 1.49042 1.93537 1.84666 1.77322 1.40361 1.29900 1.23617 1.23477 1.09782 1.20265 0.92307 0.95202 0.94424 1.20486 1.07425 0.97816 1.01335 1.20901 0.97020 0.97306 0.94365 1.21510 0.99994 0.98213 0.98185 1.17009 0.88185 0.88426 0.88198 1.19882 1.08401 1.25926 0.93298 0.89436 1.25951 0.95968 0.92081 1.00097 1.69792 1.21059 1.26266 1.23004 0.86112 0.81145 0.78892 0.79879 1.17872 1.19369 1.19539 1.62186 1.58449 1.02977 1.02403 1.22488 0.96982 0.90774 1.02945 1.22397 0.98858 0.98653 0.92652 0.92670 0.92157 0.91806 0.91217 0.90858 0.92143 0.89676 0.75902 0.87400 0.88784 0.88892 0.85752 0.90266 0.95384 0.91589 0.90834 0.91293 0.91505 0.95721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.64 8.44 37.16 0.31 -1.32 16 2 C 0.08 0.84 2.31 -67.71 -0.16 0.69 16 3 H 0.09 0.95 8.06 -51.93 -0.42 0.53 16 4 C -0.12 -1.41 4.75 -26.73 -0.13 -1.53 16 5 C 0.13 2.03 6.09 -4.04 -0.02 2.00 16 6 N -1.12 -19.90 5.05 -10.61 -0.05 -19.96 16 7 S 2.70 60.33 4.95 -107.50 -0.53 59.80 16 8 O -1.00 -23.29 16.50 -57.17 -0.94 -24.24 16 9 O -0.97 -24.50 16.63 -57.17 -0.95 -25.45 16 10 C -0.77 -18.77 5.89 -38.87 -0.23 -19.00 16 11 C 0.00 -0.05 9.53 -39.66 -0.38 -0.43 16 12 C -0.25 -5.56 10.05 -39.29 -0.39 -5.95 16 13 C -0.08 -1.75 10.02 -39.66 -0.40 -2.14 16 14 C -0.16 -3.97 8.66 -38.87 -0.34 -4.30 16 15 C 0.19 4.78 5.55 -106.83 -0.59 4.19 16 16 C -0.45 -11.23 7.66 -37.74 -0.29 -11.52 16 17 H 0.09 2.05 5.76 -52.48 -0.30 1.75 16 18 C 0.08 1.93 5.24 -17.34 -0.09 1.83 16 19 N -0.78 -19.24 10.86 55.55 0.60 -18.63 16 20 Si 0.92 18.01 29.58 -169.99 -5.03 12.98 16 21 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 22 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 23 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 24 N -0.54 -5.97 4.42 -243.18 -1.08 -7.05 16 25 C 0.02 0.16 8.79 60.06 0.53 0.69 16 26 C 0.02 0.21 9.36 60.06 0.56 0.77 16 27 H 0.05 0.46 6.69 -51.93 -0.35 0.11 16 28 H 0.06 0.52 6.33 -51.93 -0.33 0.19 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.79 6.34 -51.93 -0.33 0.47 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.08 1.41 7.39 -51.93 -0.38 1.03 16 34 H 0.41 6.41 8.45 -34.47 -0.29 6.12 16 35 H 0.11 2.33 7.33 -52.49 -0.38 1.94 16 36 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 37 H 0.09 1.84 8.06 -52.48 -0.42 1.41 16 38 H 0.12 3.12 6.22 -52.49 -0.33 2.79 16 39 H 0.29 6.34 8.30 -40.82 -0.34 6.01 16 40 H 0.03 0.24 6.21 -51.93 -0.32 -0.08 16 41 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 42 H 0.07 0.77 6.37 -51.93 -0.33 0.44 16 43 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 44 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 45 H 0.02 0.20 6.62 -51.93 -0.34 -0.14 16 LS Contribution 366.61 15.07 5.52 5.52 Total: -1.00 -30.80 366.61 -10.69 -41.49 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -6.62 Total: 11.55 kcal Atomic # 6 Polarization: -34.41 SS G_CDS: -1.61 Total: -36.02 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: -0.53 Total: -45.64 kcal Atomic # 8 Polarization: -47.79 SS G_CDS: -1.89 Total: -49.68 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.03 Total: 12.98 kcal Atomic # 16 Polarization: 60.33 SS G_CDS: -0.53 Total: 59.80 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.80 -10.69 -41.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601464447.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.955 kcal (2) G-P(sol) polarization free energy of solvation -30.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds