Wall clock time and date at job start Tue Mar 31 2020 15:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47325 * 2 1 4 4 C 1.52997 * 109.47632 * 239.99530 * 2 1 3 5 5 C 1.50710 * 109.46609 * 65.00015 * 4 2 1 6 6 H 1.07993 * 120.00028 * 0.02562 * 5 4 2 7 7 C 1.37874 * 119.99988 * 179.97438 * 5 4 2 8 8 N 1.31518 * 120.00089 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00196 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47197 * 60.00359 * 9 7 5 11 11 H 1.48501 * 109.47307 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47010 * 300.00295 * 9 7 5 13 13 C 1.53002 * 109.47226 * 119.99759 * 2 1 3 14 14 N 1.46502 * 109.47514 * 295.00483 * 13 2 1 15 15 C 1.39669 * 120.00681 * 179.97438 * 14 13 2 16 16 C 1.38905 * 120.07711 * 179.97438 * 15 14 13 17 17 C 1.38102 * 119.92398 * 179.72013 * 16 15 14 18 18 C 1.38284 * 120.07730 * 0.28542 * 17 16 15 19 19 C 1.50702 * 119.92910 * 179.97438 * 18 17 16 20 20 N 1.46498 * 109.47209 * 89.99435 * 19 18 17 21 21 S 1.65599 * 119.99904 * 165.00203 * 20 19 18 22 22 C 1.81402 * 104.45160 * 64.99889 * 21 20 19 23 23 O 1.42096 * 104.28012 * 181.07221 * 21 20 19 24 24 O 1.42102 * 104.27575 * 308.93044 * 21 20 19 25 25 C 1.38287 * 120.14784 * 359.96989 * 18 17 16 26 26 C 1.38104 * 120.07420 * 0.02562 * 25 18 17 27 27 H 1.08996 * 109.47078 * 300.00060 * 1 2 3 28 28 H 1.09000 * 109.46889 * 60.00066 * 1 2 3 29 29 H 1.08997 * 109.46990 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47337 * 184.99770 * 4 2 1 31 31 H 1.08996 * 109.47293 * 305.00260 * 4 2 1 32 32 H 0.96995 * 120.00525 * 179.97438 * 8 7 5 33 33 H 1.08995 * 109.47465 * 174.99912 * 13 2 1 34 34 H 1.09006 * 109.46988 * 54.99998 * 13 2 1 35 35 H 0.97008 * 119.99236 * 359.97438 * 14 13 2 36 36 H 1.08002 * 120.04044 * 0.02562 * 16 15 14 37 37 H 1.08008 * 119.96515 * 180.25651 * 17 16 15 38 38 H 1.08998 * 109.46900 * 209.99776 * 19 18 17 39 39 H 1.09005 * 109.46585 * 329.99345 * 19 18 17 40 40 H 0.96993 * 120.00059 * 345.00143 * 20 19 18 41 41 H 1.09002 * 109.47060 * 59.99840 * 22 21 20 42 42 H 1.08996 * 109.47296 * 179.97438 * 22 21 20 43 43 H 1.09001 * 109.47254 * 300.00265 * 22 21 20 44 44 H 1.08007 * 119.96182 * 180.02562 * 25 18 17 45 45 H 1.07997 * 120.03619 * 180.02562 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.6414 0.0570 -2.4766 6 1 1.0807 0.9745 -2.3757 7 6 1.9934 -0.4017 -3.7282 8 7 2.6766 -1.5188 -3.8511 9 14 1.4999 0.5633 -5.2495 10 1 2.0920 1.9237 -5.1865 11 1 1.9948 -0.1368 -6.4620 12 1 0.0199 0.6699 -5.3096 13 6 2.0400 -0.7212 1.2493 14 7 1.6524 0.0353 2.4425 15 6 2.0079 -0.4298 3.7105 16 6 1.6417 0.2866 4.8428 17 6 1.9899 -0.1793 6.0954 18 6 2.7075 -1.3544 6.2229 19 6 3.0862 -1.8594 7.5913 20 7 2.0283 -2.7370 8.0981 21 16 2.3218 -3.7243 9.3947 22 6 2.6139 -2.5840 10.7750 23 8 1.1028 -4.4304 9.5807 24 8 3.5192 -4.4078 9.0507 25 6 3.0783 -2.0674 5.0975 26 6 2.7333 -1.6072 3.8419 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1264 -0.7995 -1.2054 31 1 1.6055 -1.7198 -1.2950 32 1 2.9240 -1.8417 -4.7316 33 1 3.1263 -0.7995 1.2057 34 1 1.6054 -1.7198 1.2952 35 1 1.1487 0.8594 2.3517 36 1 1.0809 1.2043 4.7440 37 1 1.7018 0.3751 6.9764 38 1 4.0208 -2.4166 7.5271 39 1 3.2127 -1.0144 8.2682 40 1 1.1559 -2.7398 7.6741 41 1 1.7304 -1.9641 10.9273 42 1 2.8174 -3.1548 11.6810 43 1 3.4689 -1.9479 10.5461 44 1 3.6384 -2.9851 5.2006 45 1 3.0229 -2.1647 2.9634 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602498564.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:24 Heat of formation + Delta-G solvation = -64.497146 kcal Electronic energy + Delta-G solvation = -24341.068878 eV Core-core repulsion = 20677.767209 eV Total energy + Delta-G solvation = -3663.301669 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.62924 -37.46564 -37.09598 -36.27695 -35.49598 -33.71791 -32.09513 -30.91864 -29.92845 -29.54558 -27.03074 -26.26682 -24.71976 -23.22108 -22.29109 -20.87506 -19.79420 -19.35254 -18.05861 -17.26446 -16.79918 -16.63653 -16.49558 -15.67349 -15.37434 -14.84845 -14.65591 -14.55028 -14.28481 -13.89131 -13.71096 -13.60861 -13.44077 -13.12409 -13.00027 -12.87293 -12.56965 -12.43102 -12.33771 -12.28223 -11.94370 -11.59594 -11.46586 -11.28978 -10.98367 -10.95788 -10.89803 -10.46498 -10.40484 -10.07324 -9.82548 -9.71857 -9.35621 -9.10881 -8.91748 -8.40705 -7.27494 -6.05210 -4.07509 -0.11006 1.46854 1.49557 2.46644 3.29233 3.34456 3.35926 3.45158 3.64810 3.79864 3.90430 4.29943 4.41416 4.50651 4.57529 4.75833 5.02292 5.04335 5.14013 5.18968 5.30464 5.42040 5.46055 5.56786 5.61441 5.67232 5.80144 5.85768 6.04619 6.13397 6.29105 6.33419 6.37379 6.42243 6.63679 6.68425 6.76085 6.90644 6.94390 6.99554 7.48550 7.57154 7.70576 7.88852 7.92805 8.34874 8.97829 9.56387 11.06060 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.032917 B = 0.001761 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.431801 B =15894.867505 C =16242.903080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.096 4.096 3 H 0.062 0.938 4 C 0.030 3.970 5 C -0.518 4.518 6 H 0.056 0.944 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.892 3.108 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.124 3.876 14 N -0.737 5.737 15 C 0.235 3.765 16 C -0.208 4.208 17 C -0.053 4.053 18 C -0.180 4.180 19 C 0.167 3.833 20 N -1.115 6.115 21 S 2.613 3.387 22 C -0.675 4.675 23 O -0.962 6.962 24 O -0.957 6.957 25 C -0.047 4.047 26 C -0.202 4.202 27 H 0.030 0.970 28 H 0.064 0.936 29 H 0.046 0.954 30 H 0.017 0.983 31 H 0.019 0.981 32 H 0.261 0.739 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.398 0.602 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.084 0.916 39 H 0.066 0.934 40 H 0.420 0.580 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.127 0.873 44 H 0.121 0.879 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.308 1.675 28.716 28.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.115 4.115 3 H 0.080 0.920 4 C -0.007 4.007 5 C -0.556 4.556 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.720 3.280 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.203 1.203 13 C 0.000 4.000 14 N -0.363 5.363 15 C 0.128 3.872 16 C -0.231 4.231 17 C -0.073 4.073 18 C -0.184 4.184 19 C 0.042 3.958 20 N -0.875 5.875 21 S 2.704 3.296 22 C -0.824 4.824 23 O -0.952 6.952 24 O -0.947 6.947 25 C -0.067 4.067 26 C -0.225 4.225 27 H 0.049 0.951 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.036 0.964 31 H 0.037 0.963 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.233 0.767 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.102 0.898 39 H 0.084 0.916 40 H 0.255 0.745 41 H 0.147 0.853 42 H 0.145 0.855 43 H 0.146 0.854 44 H 0.139 0.861 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.043 0.487 28.488 28.492 hybrid contribution -0.744 1.538 -0.922 1.942 sum -0.701 2.026 27.566 27.649 Atomic orbital electron populations 1.21723 0.95890 1.01143 1.00182 1.21446 0.95660 0.99802 0.94601 0.91972 1.19075 0.96271 0.95553 0.89812 1.21140 1.35189 1.08396 0.90920 0.92620 1.25018 0.95207 0.95089 0.99151 1.69944 1.38633 1.21076 1.23683 0.86664 0.78866 0.80078 0.82412 1.20286 1.21294 1.20284 1.21675 0.99183 0.95225 0.83872 1.45113 1.60568 1.27862 1.02788 1.18017 0.91358 0.92241 0.85600 1.20540 1.08649 1.02412 0.91507 1.20660 0.95428 0.94731 0.96476 1.19280 1.07173 0.98237 0.93684 1.20063 0.89886 0.92778 0.93052 1.55716 1.22979 1.60512 1.48330 1.04741 0.74327 0.74916 0.75580 1.30546 1.12071 1.18745 1.21077 1.93623 1.45517 1.70098 1.85962 1.93622 1.49248 1.70446 1.81399 1.20813 0.96473 0.97981 0.91408 1.20735 1.05624 0.97987 0.98126 0.95131 0.91731 0.93438 0.96434 0.96290 0.92892 0.92391 0.92464 0.76689 0.86413 0.86464 0.89815 0.91616 0.74508 0.85281 0.85487 0.85389 0.86106 0.85729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.30 8.88 37.16 0.33 -1.97 16 2 C -0.10 -1.80 2.37 -90.62 -0.22 -2.01 16 3 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 4 C 0.03 0.74 4.45 -27.88 -0.12 0.61 16 5 C -0.52 -13.94 8.41 -34.44 -0.29 -14.23 16 6 H 0.06 1.45 7.06 -52.49 -0.37 1.08 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.89 -26.21 13.29 55.43 0.74 -25.48 16 9 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 C 0.12 1.97 4.30 -4.04 -0.02 1.95 16 14 N -0.74 -9.94 5.46 -58.63 -0.32 -10.26 16 15 C 0.23 3.00 6.65 -83.79 -0.56 2.45 16 16 C -0.21 -2.25 9.90 -39.38 -0.39 -2.64 16 17 C -0.05 -0.49 9.69 -39.61 -0.38 -0.87 16 18 C -0.18 -1.67 5.28 -104.59 -0.55 -2.22 16 19 C 0.17 1.13 6.25 -5.19 -0.03 1.09 16 20 N -1.11 -7.31 5.88 -11.66 -0.07 -7.38 16 21 S 2.61 18.14 6.10 -107.50 -0.66 17.49 16 22 C -0.67 -2.06 10.89 101.05 1.10 -0.96 16 23 O -0.96 -10.32 18.08 -57.54 -1.04 -11.36 16 24 O -0.96 -10.31 17.50 -57.54 -1.01 -11.31 16 25 C -0.05 -0.52 9.69 -39.61 -0.38 -0.90 16 26 C -0.20 -2.57 9.31 -39.38 -0.37 -2.94 16 27 H 0.03 0.44 7.18 -51.93 -0.37 0.07 16 28 H 0.06 1.22 6.95 -51.93 -0.36 0.86 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 33 H 0.06 0.95 7.94 -51.93 -0.41 0.54 16 34 H 0.06 0.93 7.96 -51.93 -0.41 0.52 16 35 H 0.40 4.91 7.67 -40.82 -0.31 4.60 16 36 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 38 H 0.08 0.57 7.64 -51.93 -0.40 0.18 16 39 H 0.07 0.26 8.08 -51.93 -0.42 -0.16 16 40 H 0.42 2.70 8.61 -34.47 -0.30 2.41 16 41 H 0.13 0.24 8.14 -51.92 -0.42 -0.19 16 42 H 0.13 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.13 0.22 8.14 -51.92 -0.42 -0.20 16 44 H 0.12 1.20 8.06 -52.48 -0.42 0.77 16 45 H 0.12 1.64 6.73 -52.49 -0.35 1.28 16 LS Contribution 383.97 15.07 5.79 5.79 Total: -1.00 -34.57 383.97 -10.64 -45.21 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -7.07 Total: 2.31 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: -1.98 Total: -21.16 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: 0.35 Total: -43.11 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -2.05 Total: -22.67 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 18.14 SS G_CDS: -0.66 Total: 17.49 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.57 -10.64 -45.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602498564.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.287 kcal (2) G-P(sol) polarization free energy of solvation -34.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds