Wall clock time and date at job start Tue Mar 31 2020 15:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47470 * 2 1 4 4 C 1.53005 * 109.47179 * 240.00162 * 2 1 3 5 5 C 1.50705 * 109.47005 * 64.99925 * 4 2 1 6 6 H 1.08004 * 120.00124 * 0.02562 * 5 4 2 7 7 C 1.37873 * 119.99910 * 179.97438 * 5 4 2 8 8 N 1.31518 * 120.00301 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 120.00054 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46646 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46913 * 120.00169 * 9 7 5 12 12 H 1.48499 * 109.47290 * 240.00662 * 9 7 5 13 13 C 1.53000 * 109.47111 * 120.00203 * 2 1 3 14 14 N 1.46897 * 109.47003 * 294.99874 * 13 2 1 15 15 C 1.46901 * 110.99605 * 179.97438 * 14 13 2 16 16 C 1.50703 * 109.46905 * 180.02562 * 15 14 13 17 17 C 1.38284 * 119.92565 * 269.72889 * 16 15 14 18 18 C 1.38099 * 120.07651 * 179.72761 * 17 16 15 19 19 C 1.38910 * 119.92295 * 0.54307 * 18 17 16 20 20 N 1.39681 * 120.07428 * 179.70797 * 19 18 17 21 21 S 1.65598 * 119.99831 * 313.83141 * 20 19 18 22 22 C 1.81395 * 104.45025 * 298.76683 * 21 20 19 23 23 O 1.42093 * 104.27679 * 54.83883 * 21 20 19 24 24 O 1.42103 * 104.27420 * 182.69373 * 21 20 19 25 25 C 1.38908 * 119.85272 * 359.72709 * 19 18 17 26 26 C 1.38109 * 119.92300 * 0.02562 * 25 19 18 27 27 H 1.08995 * 109.47311 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46998 * 59.99763 * 1 2 3 29 29 H 1.08998 * 109.47470 * 299.99914 * 1 2 3 30 30 H 1.08999 * 109.47614 * 184.99944 * 4 2 1 31 31 H 1.08997 * 109.47121 * 305.00643 * 4 2 1 32 32 H 0.96995 * 120.00095 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.46717 * 55.00153 * 13 2 1 34 34 H 1.09002 * 109.46877 * 174.99494 * 13 2 1 35 35 H 1.00894 * 110.99990 * 56.04707 * 14 13 2 36 36 H 1.08998 * 109.47294 * 299.99871 * 15 14 13 37 37 H 1.09000 * 109.47220 * 60.00210 * 15 14 13 38 38 H 1.08003 * 119.96444 * 359.97438 * 17 16 15 39 39 H 1.08006 * 120.04309 * 180.27110 * 18 17 16 40 40 H 0.97002 * 120.00072 * 133.83833 * 20 19 18 41 41 H 1.09001 * 109.47686 * 65.01822 * 22 21 20 42 42 H 1.09000 * 109.47194 * 185.02143 * 22 21 20 43 43 H 1.09007 * 109.47352 * 305.01415 * 22 21 20 44 44 H 1.07995 * 120.04216 * 179.97438 * 25 19 18 45 45 H 1.07995 * 119.96188 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0806 0.9747 -2.3757 7 6 1.9932 -0.4016 -3.7283 8 7 2.6764 -1.5186 -3.8513 9 14 1.4996 0.5636 -5.2496 10 1 0.7431 1.7752 -4.8433 11 1 2.7180 0.9684 -5.9959 12 1 0.6458 -0.2852 -6.1190 13 6 2.0400 -0.7213 1.2492 14 7 1.6514 0.0374 2.4456 15 6 2.1248 -0.6273 3.6671 16 6 1.7077 0.1778 4.8709 17 6 2.5434 1.1622 5.3656 18 6 2.1619 1.9057 6.4651 19 6 0.9421 1.6561 7.0810 20 7 0.5558 2.4020 8.1970 21 16 1.6304 2.6655 9.4291 22 6 2.0302 1.0062 10.0436 23 8 2.7594 3.2464 8.7913 24 8 0.8829 3.3890 10.3972 25 6 0.1075 0.6627 6.5849 26 6 0.4930 -0.0736 5.4819 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 0.5138 0.8900 30 1 3.1263 -0.7995 -1.2057 31 1 1.6053 -1.7197 -1.2953 32 1 2.9237 -1.8415 -4.7319 33 1 1.6053 -1.7198 1.2950 34 1 3.1263 -0.7996 1.2055 35 1 0.6529 0.1792 2.4753 36 1 1.6903 -1.6250 3.7296 37 1 3.2116 -0.7053 3.6405 38 1 3.4938 1.3526 4.8892 39 1 2.8131 2.6774 6.8484 40 1 -0.3419 2.7657 8.2502 41 1 2.5506 0.4465 9.2664 42 1 2.6699 1.0885 10.9223 43 1 1.1102 0.4865 10.3114 44 1 -0.8413 0.4657 7.0616 45 1 -0.1552 -0.8464 5.0959 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602513131.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:36 Heat of formation + Delta-G solvation = -58.774535 kcal Electronic energy + Delta-G solvation = -24531.440406 eV Core-core repulsion = 20868.386888 eV Total energy + Delta-G solvation = -3663.053518 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.94415 -37.65704 -37.14357 -36.49021 -35.62540 -33.70990 -32.00027 -31.20793 -30.01984 -29.70020 -26.92340 -25.90552 -24.24371 -23.14906 -22.20622 -21.43516 -19.98428 -19.00020 -18.32613 -18.06710 -16.79002 -16.59518 -16.05307 -15.84485 -15.55406 -14.92892 -14.76474 -14.29412 -14.22468 -13.86146 -13.76180 -13.75218 -13.51657 -13.36053 -12.95303 -12.64538 -12.58633 -12.46861 -12.31096 -12.12268 -11.80065 -11.65162 -11.44129 -11.37434 -11.20953 -10.87635 -10.75590 -10.71470 -10.32568 -10.20252 -9.72691 -9.20443 -9.17804 -8.96328 -8.60697 -8.33146 -8.15094 -5.97653 -3.98613 -0.34281 1.00122 1.14683 2.08406 3.22029 3.32353 3.39752 3.40281 3.44304 3.67685 4.20102 4.42477 4.45165 4.53322 4.60761 4.69172 4.76280 4.88103 5.13611 5.14576 5.18903 5.38299 5.54357 5.56573 5.71846 5.76481 5.79710 5.88292 6.00863 6.04972 6.16667 6.24280 6.43428 6.44585 6.48622 6.55020 6.78151 6.92673 7.10358 7.16725 7.32753 7.61313 7.70277 7.85831 8.02749 8.46642 9.08013 9.64890 11.13864 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.033848 B = 0.001784 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.025587 B =15694.569500 C =15833.561625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 H 0.066 0.934 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.057 0.943 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.064 3.936 14 N -0.685 5.685 15 C 0.093 3.907 16 C -0.080 4.080 17 C -0.075 4.075 18 C -0.152 4.152 19 C 0.129 3.871 20 N -1.057 6.057 21 S 2.610 3.390 22 C -0.668 4.668 23 O -0.947 6.947 24 O -0.956 6.956 25 C -0.130 4.130 26 C -0.099 4.099 27 H 0.040 0.960 28 H 0.063 0.937 29 H 0.031 0.969 30 H 0.015 0.985 31 H 0.014 0.986 32 H 0.259 0.741 33 H 0.024 0.976 34 H 0.068 0.932 35 H 0.339 0.661 36 H 0.036 0.964 37 H 0.081 0.919 38 H 0.133 0.867 39 H 0.156 0.844 40 H 0.425 0.575 41 H 0.132 0.868 42 H 0.131 0.869 43 H 0.130 0.870 44 H 0.126 0.874 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.778 2.163 29.800 30.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.103 4.103 3 H 0.084 0.916 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.065 4.065 14 N -0.316 5.316 15 C -0.036 4.036 16 C -0.081 4.081 17 C -0.094 4.094 18 C -0.173 4.173 19 C 0.033 3.967 20 N -0.808 5.808 21 S 2.703 3.297 22 C -0.818 4.818 23 O -0.937 6.937 24 O -0.946 6.946 25 C -0.152 4.152 26 C -0.118 4.118 27 H 0.060 0.940 28 H 0.082 0.918 29 H 0.050 0.950 30 H 0.034 0.966 31 H 0.032 0.968 32 H 0.068 0.932 33 H 0.042 0.958 34 H 0.087 0.913 35 H 0.158 0.842 36 H 0.054 0.946 37 H 0.099 0.901 38 H 0.150 0.850 39 H 0.174 0.826 40 H 0.262 0.738 41 H 0.151 0.849 42 H 0.150 0.850 43 H 0.149 0.851 44 H 0.144 0.856 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.679 3.278 29.983 30.280 hybrid contribution -1.409 -0.950 -0.905 1.925 sum -4.088 2.328 29.079 29.457 Atomic orbital electron populations 1.21743 0.96714 1.00388 1.00311 1.21226 0.94855 1.00157 0.94088 0.91579 1.19119 0.96156 0.95355 0.90374 1.21279 1.34508 1.08247 0.90968 0.92497 1.25030 0.95362 0.95119 0.99139 1.69974 1.39173 1.21275 1.23259 0.86570 0.78250 0.80119 0.83261 1.19748 1.21092 1.21148 1.22172 1.00459 0.94417 0.89409 1.60637 1.19822 1.50326 1.00849 1.20920 1.01074 0.93951 0.87607 1.20005 0.94412 0.97229 0.96461 1.21020 0.99968 0.93876 0.94578 1.21929 0.97302 1.01507 0.96527 1.17389 0.95919 0.93399 0.89958 1.53270 1.30016 1.66354 1.31189 1.05054 0.74120 0.77098 0.73410 1.30458 1.12622 1.25305 1.13465 1.93597 1.52326 1.74242 1.73531 1.93633 1.70801 1.69372 1.60841 1.21072 1.00352 0.95467 0.98318 1.20969 0.95985 0.99549 0.95297 0.94050 0.91845 0.94971 0.96631 0.96761 0.93168 0.95763 0.91340 0.84198 0.94572 0.90104 0.84951 0.82650 0.73790 0.84946 0.85005 0.85090 0.85570 0.85679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 8.77 37.16 0.33 -2.13 16 2 C -0.08 -1.69 2.55 -90.62 -0.23 -1.92 16 3 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.25 8.41 -34.44 -0.29 -14.54 16 6 H 0.06 1.55 7.06 -52.48 -0.37 1.18 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.87 13.29 55.43 0.74 -26.13 16 9 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 10 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 C 0.06 1.06 5.14 -3.83 -0.02 1.04 16 14 N -0.68 -9.54 6.49 -115.06 -0.75 -10.28 16 15 C 0.09 1.05 5.81 -4.97 -0.03 1.02 16 16 C -0.08 -0.80 5.39 -104.59 -0.56 -1.37 16 17 C -0.08 -0.76 9.69 -39.62 -0.38 -1.14 16 18 C -0.15 -1.46 9.24 -39.38 -0.36 -1.82 16 19 C 0.13 1.04 6.02 -83.78 -0.50 0.53 16 20 N -1.06 -6.53 5.67 32.41 0.18 -6.35 16 21 S 2.61 17.13 6.00 -107.50 -0.64 16.48 16 22 C -0.67 -2.29 10.74 101.05 1.09 -1.20 16 23 O -0.95 -9.44 15.18 -57.54 -0.87 -10.31 16 24 O -0.96 -9.17 18.08 -57.54 -1.04 -10.21 16 25 C -0.13 -0.98 9.97 -39.38 -0.39 -1.37 16 26 C -0.10 -0.85 9.69 -39.61 -0.38 -1.23 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.06 1.26 6.95 -51.92 -0.36 0.90 16 29 H 0.03 0.49 6.68 -51.93 -0.35 0.14 16 30 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.34 4.54 6.97 -39.30 -0.27 4.27 16 36 H 0.04 0.38 8.08 -51.93 -0.42 -0.04 16 37 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 38 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 39 H 0.16 1.57 5.64 -52.48 -0.30 1.27 16 40 H 0.43 1.89 8.92 -34.47 -0.31 1.58 16 41 H 0.13 0.43 8.14 -51.92 -0.42 0.00 16 42 H 0.13 0.27 8.14 -51.92 -0.42 -0.16 16 43 H 0.13 0.26 8.14 -51.92 -0.42 -0.17 16 44 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 45 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 LS Contribution 381.03 15.07 5.74 5.74 Total: -1.00 -34.98 381.03 -10.64 -45.62 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -7.00 Total: 0.89 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: -1.97 Total: -22.11 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: 0.17 Total: -42.76 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -1.91 Total: -20.52 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 17.13 SS G_CDS: -0.64 Total: 16.48 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.98 -10.64 -45.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602513131.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.155 kcal (2) G-P(sol) polarization free energy of solvation -34.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds