Wall clock time and date at job start Tue Mar 31 2020 15:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47470 * 2 1 4 4 C 1.53005 * 109.47179 * 240.00162 * 2 1 3 5 5 C 1.50705 * 109.47005 * 64.99925 * 4 2 1 6 6 H 1.08004 * 120.00124 * 0.02562 * 5 4 2 7 7 C 1.37873 * 119.99910 * 179.97438 * 5 4 2 8 8 N 1.31518 * 120.00301 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 120.00054 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46646 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46913 * 120.00169 * 9 7 5 12 12 H 1.48499 * 109.47290 * 240.00662 * 9 7 5 13 13 C 1.53000 * 109.47111 * 120.00203 * 2 1 3 14 14 N 1.46897 * 109.47003 * 294.99874 * 13 2 1 15 15 C 1.46901 * 110.99605 * 179.97438 * 14 13 2 16 16 C 1.50703 * 109.46905 * 180.02562 * 15 14 13 17 17 C 1.38284 * 119.92565 * 269.72889 * 16 15 14 18 18 C 1.38099 * 120.07651 * 179.72761 * 17 16 15 19 19 C 1.38910 * 119.92295 * 0.54307 * 18 17 16 20 20 N 1.39681 * 120.07428 * 179.70797 * 19 18 17 21 21 S 1.65598 * 119.99831 * 313.83141 * 20 19 18 22 22 C 1.81395 * 104.45025 * 298.76683 * 21 20 19 23 23 O 1.42093 * 104.27679 * 54.83883 * 21 20 19 24 24 O 1.42103 * 104.27420 * 182.69373 * 21 20 19 25 25 C 1.38908 * 119.85272 * 359.72709 * 19 18 17 26 26 C 1.38109 * 119.92300 * 0.02562 * 25 19 18 27 27 H 1.08995 * 109.47311 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46998 * 59.99763 * 1 2 3 29 29 H 1.08998 * 109.47470 * 299.99914 * 1 2 3 30 30 H 1.08999 * 109.47614 * 184.99944 * 4 2 1 31 31 H 1.08997 * 109.47121 * 305.00643 * 4 2 1 32 32 H 0.96995 * 120.00095 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.46717 * 55.00153 * 13 2 1 34 34 H 1.09002 * 109.46877 * 174.99494 * 13 2 1 35 35 H 1.00894 * 110.99990 * 56.04707 * 14 13 2 36 36 H 1.08998 * 109.47294 * 299.99871 * 15 14 13 37 37 H 1.09000 * 109.47220 * 60.00210 * 15 14 13 38 38 H 1.08003 * 119.96444 * 359.97438 * 17 16 15 39 39 H 1.08006 * 120.04309 * 180.27110 * 18 17 16 40 40 H 0.97002 * 120.00072 * 133.83833 * 20 19 18 41 41 H 1.09001 * 109.47686 * 65.01822 * 22 21 20 42 42 H 1.09000 * 109.47194 * 185.02143 * 22 21 20 43 43 H 1.09007 * 109.47352 * 305.01415 * 22 21 20 44 44 H 1.07995 * 120.04216 * 179.97438 * 25 19 18 45 45 H 1.07995 * 119.96188 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0806 0.9747 -2.3757 7 6 1.9932 -0.4016 -3.7283 8 7 2.6764 -1.5186 -3.8513 9 14 1.4996 0.5636 -5.2496 10 1 0.7431 1.7752 -4.8433 11 1 2.7180 0.9684 -5.9959 12 1 0.6458 -0.2852 -6.1190 13 6 2.0400 -0.7213 1.2492 14 7 1.6514 0.0374 2.4456 15 6 2.1248 -0.6273 3.6671 16 6 1.7077 0.1778 4.8709 17 6 2.5434 1.1622 5.3656 18 6 2.1619 1.9057 6.4651 19 6 0.9421 1.6561 7.0810 20 7 0.5558 2.4020 8.1970 21 16 1.6304 2.6655 9.4291 22 6 2.0302 1.0062 10.0436 23 8 2.7594 3.2464 8.7913 24 8 0.8829 3.3890 10.3972 25 6 0.1075 0.6627 6.5849 26 6 0.4930 -0.0736 5.4819 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 0.5138 0.8900 30 1 3.1263 -0.7995 -1.2057 31 1 1.6053 -1.7197 -1.2953 32 1 2.9237 -1.8415 -4.7319 33 1 1.6053 -1.7198 1.2950 34 1 3.1263 -0.7996 1.2055 35 1 0.6529 0.1792 2.4753 36 1 1.6903 -1.6250 3.7296 37 1 3.2116 -0.7053 3.6405 38 1 3.4938 1.3526 4.8892 39 1 2.8131 2.6774 6.8484 40 1 -0.3419 2.7657 8.2502 41 1 2.5506 0.4465 9.2664 42 1 2.6699 1.0885 10.9223 43 1 1.1102 0.4865 10.3114 44 1 -0.8413 0.4657 7.0616 45 1 -0.1552 -0.8464 5.0959 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602513131.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:35 Heat of formation + Delta-G solvation = -84.185082 kcal Electronic energy + Delta-G solvation = -24532.542290 eV Core-core repulsion = 20868.386888 eV Total energy + Delta-G solvation = -3664.155402 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.61960 -38.50298 -38.19649 -37.13766 -36.57801 -35.17931 -33.74298 -31.86522 -30.67890 -30.33558 -28.76857 -27.14393 -25.58620 -23.91021 -23.73035 -22.20038 -20.64062 -20.52969 -18.89980 -18.63632 -18.53279 -17.34425 -17.18622 -16.60795 -16.47694 -16.27794 -15.88226 -15.68009 -15.14089 -14.79019 -14.56011 -14.37559 -14.15672 -14.09144 -14.06955 -13.96732 -13.50435 -13.35289 -13.28462 -13.21246 -13.10251 -13.00927 -12.75223 -12.54994 -12.29406 -12.22691 -12.12187 -11.90038 -11.85949 -11.46529 -11.32982 -11.04335 -10.90205 -10.52613 -9.87226 -9.39410 -9.15362 -8.16480 -6.25081 -0.83443 0.31785 0.48301 1.40264 1.41182 1.53921 1.57858 2.42802 2.68410 2.75737 3.16963 3.19575 3.48934 3.86920 3.93059 4.02407 4.08341 4.14113 4.24499 4.28150 4.30952 4.44859 4.48616 4.52561 4.74963 4.82764 4.84301 4.90620 4.91323 5.07394 5.08015 5.20567 5.26678 5.36234 5.41196 5.51045 5.51904 5.57933 5.76026 5.82802 5.89291 5.91748 6.10006 6.18649 6.33517 6.54522 6.91281 7.43023 8.95599 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.033848 B = 0.001784 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.025587 B =15694.569500 C =15833.561625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.077 4.077 3 H 0.053 0.947 4 C 0.032 3.968 5 C -0.527 4.527 6 H 0.060 0.940 7 C -0.004 4.004 8 N -0.935 5.935 9 Si 0.960 3.040 10 H -0.263 1.263 11 H -0.281 1.281 12 H -0.279 1.279 13 C 0.078 3.922 14 N -0.687 5.687 15 C 0.096 3.904 16 C -0.093 4.093 17 C -0.086 4.086 18 C -0.167 4.167 19 C 0.135 3.865 20 N -1.052 6.052 21 S 2.615 3.385 22 C -0.650 4.650 23 O -0.989 6.989 24 O -0.990 6.990 25 C -0.124 4.124 26 C -0.097 4.097 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.066 0.934 30 H -0.013 1.013 31 H -0.008 1.008 32 H 0.261 0.739 33 H 0.028 0.972 34 H 0.058 0.942 35 H 0.345 0.655 36 H 0.048 0.952 37 H 0.077 0.923 38 H 0.127 0.873 39 H 0.145 0.855 40 H 0.434 0.566 41 H 0.140 0.860 42 H 0.151 0.849 43 H 0.154 0.846 44 H 0.156 0.844 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.568 1.927 31.232 31.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.095 4.095 3 H 0.072 0.928 4 C -0.005 4.005 5 C -0.565 4.565 6 H 0.078 0.922 7 C -0.201 4.201 8 N -0.576 5.576 9 Si 0.786 3.214 10 H -0.187 1.187 11 H -0.207 1.207 12 H -0.205 1.205 13 C -0.051 4.051 14 N -0.320 5.320 15 C -0.032 4.032 16 C -0.094 4.094 17 C -0.105 4.105 18 C -0.188 4.188 19 C 0.039 3.961 20 N -0.804 5.804 21 S 2.712 3.288 22 C -0.804 4.804 23 O -0.979 6.979 24 O -0.980 6.980 25 C -0.145 4.145 26 C -0.116 4.116 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.005 0.995 31 H 0.010 0.990 32 H 0.070 0.930 33 H 0.046 0.954 34 H 0.076 0.924 35 H 0.164 0.836 36 H 0.067 0.933 37 H 0.095 0.905 38 H 0.145 0.855 39 H 0.163 0.837 40 H 0.272 0.728 41 H 0.158 0.842 42 H 0.169 0.831 43 H 0.173 0.827 44 H 0.174 0.826 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.494 3.092 31.423 31.893 hybrid contribution -0.831 -0.919 -1.248 1.758 sum -5.325 2.173 30.175 30.719 Atomic orbital electron populations 1.21646 0.94961 1.00749 1.01010 1.21022 0.96255 0.98917 0.93351 0.92803 1.19015 0.94249 0.94639 0.92642 1.21680 1.34238 1.08471 0.92119 0.92197 1.25950 0.95364 0.96149 1.02644 1.70102 1.40374 1.22934 1.24167 0.85464 0.78029 0.78892 0.79060 1.18666 1.20677 1.20476 1.21845 0.99709 0.94328 0.89266 1.60537 1.20269 1.50326 1.00839 1.20913 1.00966 0.94557 0.86787 1.19904 0.95394 0.97606 0.96494 1.21043 1.00122 0.94374 0.95010 1.21909 0.98246 1.01682 0.96948 1.17422 0.95329 0.93390 0.89915 1.53101 1.30318 1.66243 1.30725 1.04677 0.73053 0.78278 0.72753 1.30299 1.14326 1.21495 1.14238 1.93548 1.53568 1.76449 1.74315 1.93589 1.71434 1.71505 1.61501 1.21342 1.01107 0.94386 0.97706 1.21191 0.95367 0.99786 0.95253 0.93827 0.93817 0.91534 0.99495 0.98988 0.92980 0.95407 0.92356 0.83577 0.93345 0.90459 0.85484 0.83717 0.72759 0.84180 0.83104 0.82724 0.82649 0.83999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.47 8.77 71.98 0.63 -3.84 16 2 C -0.08 -3.08 2.55 -10.79 -0.03 -3.11 16 3 H 0.05 2.29 8.14 -2.38 -0.02 2.27 16 4 C 0.03 1.68 4.45 29.85 0.13 1.81 16 5 C -0.53 -29.81 8.41 25.60 0.22 -29.59 16 6 H 0.06 3.28 7.06 -2.91 -0.02 3.26 16 7 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 8 N -0.93 -57.10 13.29 21.45 0.28 -56.81 16 9 Si 0.96 44.66 29.54 68.60 2.03 46.68 16 10 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 13 C 0.08 2.55 5.14 86.30 0.44 3.00 16 14 N -0.69 -18.23 6.49 -517.93 -3.36 -21.59 16 15 C 0.10 2.02 5.81 85.56 0.50 2.52 16 16 C -0.09 -1.72 5.39 -19.84 -0.11 -1.82 16 17 C -0.09 -1.70 9.69 22.25 0.22 -1.48 16 18 C -0.17 -3.12 9.24 22.40 0.21 -2.91 16 19 C 0.14 1.92 6.02 38.21 0.23 2.15 16 20 N -1.05 -11.28 5.67 -51.37 -0.29 -11.57 16 21 S 2.61 31.92 6.00 -56.49 -0.34 31.58 16 22 C -0.65 -2.56 10.74 113.37 1.22 -1.34 16 23 O -0.99 -20.02 15.18 -127.65 -1.94 -21.96 16 24 O -0.99 -18.42 18.08 -127.65 -2.31 -20.73 16 25 C -0.12 -1.45 9.97 22.40 0.22 -1.23 16 26 C -0.10 -1.38 9.69 22.25 0.22 -1.16 16 27 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.04 1.70 6.95 -2.38 -0.02 1.69 16 29 H 0.07 1.89 6.68 -2.39 -0.02 1.87 16 30 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 31 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 32 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 33 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.34 8.43 6.97 -89.70 -0.63 7.80 16 36 H 0.05 0.92 8.08 -2.39 -0.02 0.90 16 37 H 0.08 1.67 8.08 -2.39 -0.02 1.65 16 38 H 0.13 2.50 8.06 -2.91 -0.02 2.48 16 39 H 0.15 3.02 5.64 -2.91 -0.02 3.00 16 40 H 0.43 3.07 8.92 -96.74 -0.86 2.21 16 41 H 0.14 0.48 8.14 -2.39 -0.02 0.46 16 42 H 0.15 0.13 8.14 -2.39 -0.02 0.11 16 43 H 0.15 -0.03 8.14 -2.39 -0.02 -0.05 16 44 H 0.16 0.91 8.06 -2.91 -0.02 0.89 16 45 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 Total: -1.00 -76.92 381.03 -1.86 -78.78 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -0.49 Total: 12.40 kcal Atomic # 6 Polarization: -41.34 SS G_CDS: 4.56 Total: -36.78 kcal Atomic # 7 Polarization: -86.60 SS G_CDS: -3.37 Total: -89.97 kcal Atomic # 8 Polarization: -38.44 SS G_CDS: -4.24 Total: -42.68 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Atomic # 16 Polarization: 31.92 SS G_CDS: -0.34 Total: 31.58 kcal Total: -76.92 -1.86 -78.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602513131.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.403 kcal (2) G-P(sol) polarization free energy of solvation -76.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds