Wall clock time and date at job start Tue Mar 31 2020 15:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47190 * 2 1 4 4 C 1.50692 * 109.47355 * 119.99986 * 2 1 3 5 5 H 1.08005 * 120.00198 * 114.36283 * 4 2 1 6 6 C 1.37883 * 120.00282 * 294.36575 * 4 2 1 7 7 N 1.31516 * 120.00392 * 156.60075 * 6 4 2 8 8 Si 1.86799 * 119.99751 * 336.88068 * 6 4 2 9 9 H 1.48495 * 109.47179 * 179.72282 * 8 6 4 10 10 H 1.48504 * 109.47000 * 299.72206 * 8 6 4 11 11 H 1.48500 * 109.47297 * 59.72321 * 8 6 4 12 12 N 1.46897 * 109.47069 * 240.00066 * 2 1 3 13 13 C 1.46910 * 110.99968 * 84.99944 * 12 2 1 14 14 C 1.52995 * 109.47174 * 180.02562 * 13 12 2 15 15 N 1.46494 * 109.47341 * 180.02562 * 14 13 12 16 16 C 1.46497 * 119.99899 * 85.00001 * 15 14 13 17 17 C 1.50701 * 109.47278 * 85.00424 * 16 15 14 18 18 C 1.38239 * 119.99776 * 269.72752 * 17 16 15 19 19 C 1.38229 * 119.99868 * 179.76803 * 18 17 16 20 20 C 1.38226 * 120.00190 * 0.50233 * 19 18 17 21 21 C 1.38233 * 120.00066 * 359.74880 * 20 19 18 22 22 C 1.38226 * 120.00417 * 89.99787 * 17 16 15 23 23 S 1.65597 * 120.00101 * 265.00258 * 15 14 13 24 24 C 1.81397 * 104.45184 * 89.99806 * 23 15 14 25 25 O 1.42096 * 104.27795 * 206.07125 * 23 15 14 26 26 O 1.42103 * 104.27775 * 333.92510 * 23 15 14 27 27 H 1.09003 * 109.46967 * 293.10580 * 1 2 3 28 28 H 1.09006 * 109.47378 * 53.10132 * 1 2 3 29 29 H 1.08996 * 109.47246 * 173.10534 * 1 2 3 30 30 H 0.97002 * 119.99516 * 355.21211 * 7 6 4 31 31 H 1.00899 * 110.99860 * 321.05226 * 12 2 1 32 32 H 1.08994 * 109.47092 * 300.00027 * 13 12 2 33 33 H 1.08997 * 109.46937 * 60.00212 * 13 12 2 34 34 H 1.09007 * 109.47226 * 300.00268 * 14 13 12 35 35 H 1.09008 * 109.47308 * 59.99536 * 14 13 12 36 36 H 1.09003 * 109.47112 * 205.00032 * 16 15 14 37 37 H 1.09000 * 109.47238 * 325.00032 * 16 15 14 38 38 H 1.08007 * 119.99831 * 359.97438 * 18 17 16 39 39 H 1.08009 * 119.99940 * 180.23042 * 19 18 17 40 40 H 1.08009 * 120.00278 * 179.73048 * 20 19 18 41 41 H 1.08004 * 120.00381 * 179.97438 * 21 20 19 42 42 H 1.07999 * 120.00054 * 0.02562 * 22 17 16 43 43 H 1.08993 * 109.47357 * 51.62317 * 24 23 15 44 44 H 1.08999 * 109.46976 * 171.62419 * 24 23 15 45 45 H 1.09003 * 109.46811 * 291.62305 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.5762 -1.6385 1.1339 6 6 1.7978 -0.1755 2.4794 7 7 1.8025 -0.9538 3.5396 8 14 1.4655 1.6533 2.6648 9 1 1.2395 1.9726 4.0973 10 1 2.6336 2.4219 2.1647 11 1 0.2592 2.0194 1.8799 12 7 2.0196 -0.6925 -1.1994 13 6 2.0824 0.2227 -2.3469 14 6 2.5949 -0.5330 -3.5745 15 7 2.6581 0.3797 -4.7187 16 6 3.8394 1.2227 -4.9188 17 6 4.8914 0.4442 -5.6661 18 6 5.8292 -0.2950 -4.9697 19 6 6.7912 -1.0129 -5.6552 20 6 6.8217 -0.9834 -7.0369 21 6 5.8871 -0.2401 -7.7332 22 6 4.9219 0.4737 -7.0477 23 16 1.3943 0.4585 -5.7857 24 6 0.3099 1.7455 -5.1087 25 8 1.9880 0.8951 -7.0006 26 8 0.7747 -0.8167 -5.6900 27 1 -0.3633 0.4033 0.9453 28 1 -0.3634 0.6170 -0.8219 29 1 -0.3633 -1.0202 -0.1234 30 1 1.9017 -1.9132 3.4364 31 1 1.4495 -1.4978 -1.4101 32 1 1.0871 0.6164 -2.5525 33 1 2.7588 1.0462 -2.1183 34 1 3.5903 -0.9272 -3.3692 35 1 1.9182 -1.3565 -3.8030 36 1 3.5625 2.1052 -5.4954 37 1 4.2344 1.5304 -3.9506 38 1 5.8083 -0.3142 -3.8900 39 1 7.5217 -1.5935 -5.1112 40 1 7.5761 -1.5409 -7.5724 41 1 5.9112 -0.2167 -8.8127 42 1 4.1922 1.0550 -7.5917 43 1 0.8923 2.6460 -4.9140 44 1 -0.4786 1.9710 -5.8268 45 1 -0.1357 1.3928 -4.1786 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602872034.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:33 Heat of formation + Delta-G solvation = -64.293443 kcal Electronic energy + Delta-G solvation = -26152.981821 eV Core-core repulsion = 22489.688985 eV Total energy + Delta-G solvation = -3663.292836 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.24501 -38.59118 -38.14077 -37.11681 -36.88077 -34.61181 -32.81746 -31.71628 -31.25082 -30.31786 -28.30588 -26.78885 -26.17419 -23.54501 -23.03911 -22.18755 -21.83329 -19.85764 -19.50032 -18.73521 -17.72346 -17.57855 -17.09008 -16.42333 -16.12156 -16.06194 -15.90441 -15.56813 -15.45528 -15.00892 -14.39397 -14.33648 -14.21794 -14.01386 -13.96470 -13.81394 -13.61680 -13.43310 -13.28045 -13.23695 -13.15487 -13.01078 -12.82227 -12.46858 -12.34542 -12.18655 -11.94086 -11.85240 -11.80290 -11.72823 -11.58849 -11.11215 -10.34246 -10.08183 -9.76254 -9.65700 -9.07695 -8.63593 -6.24072 -0.74334 0.43544 0.55892 1.48623 1.56199 1.62836 1.74872 2.55116 2.89276 2.94713 3.07716 3.14760 3.45463 3.82568 3.92860 4.02216 4.07653 4.12413 4.19379 4.24875 4.26928 4.38127 4.49182 4.58357 4.64068 4.66253 4.71044 4.77997 4.80256 4.85684 4.94064 5.05843 5.13946 5.16238 5.19145 5.28519 5.48402 5.52394 5.62659 5.67537 5.77987 5.92457 6.14476 6.17881 6.46065 6.74637 6.81579 7.50988 8.68655 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.014286 B = 0.003451 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.432848 B = 8111.084716 C = 9321.775540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.194 3.806 3 H 0.034 0.966 4 C -0.593 4.593 5 H 0.019 0.981 6 C -0.020 4.020 7 N -0.938 5.938 8 Si 1.079 2.921 9 H -0.293 1.293 10 H -0.264 1.264 11 H -0.246 1.246 12 N -0.687 5.687 13 C 0.038 3.962 14 C 0.126 3.874 15 N -0.987 5.987 16 C 0.160 3.840 17 C -0.119 4.119 18 C -0.114 4.114 19 C -0.137 4.137 20 C -0.124 4.124 21 C -0.139 4.139 22 C -0.115 4.115 23 S 2.605 3.395 24 C -0.659 4.659 25 O -0.973 6.973 26 O -0.998 6.998 27 H 0.043 0.957 28 H 0.056 0.944 29 H 0.040 0.960 30 H 0.252 0.748 31 H 0.333 0.667 32 H 0.035 0.965 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.110 0.890 37 H 0.104 0.896 38 H 0.127 0.873 39 H 0.134 0.866 40 H 0.139 0.861 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.155 0.845 44 H 0.147 0.853 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.926 8.985 -23.674 25.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.084 3.916 3 H 0.051 0.949 4 C -0.632 4.632 5 H 0.038 0.962 6 C -0.218 4.218 7 N -0.574 5.574 8 Si 0.900 3.100 9 H -0.219 1.219 10 H -0.190 1.190 11 H -0.170 1.170 12 N -0.317 5.317 13 C -0.093 4.093 14 C 0.000 4.000 15 N -0.822 5.822 16 C 0.035 3.965 17 C -0.121 4.121 18 C -0.133 4.133 19 C -0.155 4.155 20 C -0.143 4.143 21 C -0.157 4.157 22 C -0.133 4.133 23 S 2.702 3.298 24 C -0.812 4.812 25 O -0.964 6.964 26 O -0.988 6.988 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.150 0.850 32 H 0.053 0.947 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.128 0.872 37 H 0.122 0.878 38 H 0.145 0.855 39 H 0.152 0.848 40 H 0.157 0.843 41 H 0.153 0.847 42 H 0.153 0.847 43 H 0.173 0.827 44 H 0.165 0.835 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.236 9.713 -23.181 25.341 hybrid contribution -0.642 -1.525 -0.362 1.693 sum 2.595 8.188 -23.543 25.061 Atomic orbital electron populations 1.22715 0.99567 1.00407 1.00592 1.19291 0.89986 0.94085 0.88247 0.94862 1.22149 1.38694 1.09539 0.92780 0.96239 1.27101 0.93256 1.09448 0.91982 1.70975 1.47674 1.05564 1.33175 0.83628 0.78878 0.71209 0.76262 1.21949 1.18957 1.17034 1.60448 1.58271 1.09654 1.03375 1.22500 0.99816 0.96443 0.90534 1.21173 1.03927 0.91323 0.83570 1.57351 1.30603 1.52940 1.41311 1.20381 0.83217 0.91389 1.01471 1.20403 0.97433 1.00029 0.94245 1.21321 0.94960 0.96570 1.00418 1.21426 0.99322 0.99833 0.94941 1.21465 0.99229 0.99039 0.94526 1.21459 0.95594 0.97758 1.00877 1.21533 0.98292 0.99294 0.94225 1.04861 0.74802 0.76132 0.74014 1.30485 1.16957 1.19196 1.14568 1.93539 1.75412 1.84108 1.43330 1.93554 1.77963 1.40372 1.86927 0.93811 0.92536 0.94051 0.93898 0.85008 0.94666 0.90272 0.89473 0.90013 0.87189 0.87812 0.85510 0.84813 0.84302 0.84688 0.84682 0.82686 0.83487 0.84749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.78 8.90 71.98 0.64 -6.14 16 2 C 0.19 8.40 2.17 44.17 0.10 8.49 16 3 H 0.03 1.41 6.37 -2.38 -0.02 1.40 16 4 C -0.59 -32.92 9.05 25.60 0.23 -32.68 16 5 H 0.02 1.21 8.06 -2.91 -0.02 1.19 16 6 C -0.02 -1.11 5.19 84.66 0.44 -0.67 16 7 N -0.94 -58.26 13.70 21.45 0.29 -57.97 16 8 Si 1.08 47.84 26.44 68.60 1.81 49.66 16 9 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 10 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 11 H -0.25 -9.51 6.15 99.48 0.61 -8.90 16 12 N -0.69 -25.38 6.23 -495.46 -3.09 -28.47 16 13 C 0.04 1.02 5.81 86.30 0.50 1.52 16 14 C 0.13 3.01 5.91 86.38 0.51 3.53 16 15 N -0.99 -19.31 2.70 -519.85 -1.40 -20.71 16 16 C 0.16 2.71 5.42 85.63 0.46 3.17 16 17 C -0.12 -2.52 5.46 -19.87 -0.11 -2.63 16 18 C -0.11 -2.44 9.37 22.27 0.21 -2.23 16 19 C -0.14 -2.75 10.05 22.26 0.22 -2.53 16 20 C -0.12 -2.35 10.05 22.27 0.22 -2.13 16 21 C -0.14 -2.78 10.05 22.27 0.22 -2.56 16 22 C -0.11 -2.52 9.12 22.27 0.20 -2.32 16 23 S 2.60 51.16 6.01 -56.49 -0.34 50.82 16 24 C -0.66 -7.30 10.99 113.37 1.25 -6.06 16 25 O -0.97 -22.17 14.82 -127.65 -1.89 -24.06 16 26 O -1.00 -28.25 16.53 -127.65 -2.11 -30.36 16 27 H 0.04 1.82 5.48 -2.39 -0.01 1.80 16 28 H 0.06 1.77 7.64 -2.38 -0.02 1.75 16 29 H 0.04 1.62 8.00 -2.39 -0.02 1.60 16 30 H 0.25 15.98 8.73 -92.71 -0.81 15.17 16 31 H 0.33 12.04 8.38 -89.69 -0.75 11.29 16 32 H 0.04 0.82 6.74 -2.39 -0.02 0.80 16 33 H 0.08 2.03 8.05 -2.39 -0.02 2.01 16 34 H 0.09 2.17 7.64 -2.38 -0.02 2.15 16 35 H 0.08 2.14 6.82 -2.38 -0.02 2.12 16 36 H 0.11 1.35 7.55 -2.39 -0.02 1.33 16 37 H 0.10 1.52 8.05 -2.39 -0.02 1.50 16 38 H 0.13 2.57 7.92 -2.91 -0.02 2.55 16 39 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 40 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 41 H 0.14 2.14 8.06 -2.91 -0.02 2.11 16 42 H 0.14 2.97 6.48 -2.91 -0.02 2.95 16 43 H 0.15 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.15 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.13 1.53 7.30 -2.39 -0.02 1.51 16 Total: -1.00 -75.06 374.00 -1.52 -76.58 By element: Atomic # 1 Polarization: 27.63 SS G_CDS: 0.10 Total: 27.73 kcal Atomic # 6 Polarization: -48.33 SS G_CDS: 5.10 Total: -43.23 kcal Atomic # 7 Polarization: -102.94 SS G_CDS: -4.20 Total: -107.14 kcal Atomic # 8 Polarization: -50.42 SS G_CDS: -4.00 Total: -54.42 kcal Atomic # 14 Polarization: 47.84 SS G_CDS: 1.81 Total: 49.66 kcal Atomic # 16 Polarization: 51.16 SS G_CDS: -0.34 Total: 50.82 kcal Total: -75.06 -1.52 -76.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602872034.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.289 kcal (2) G-P(sol) polarization free energy of solvation -75.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds