Wall clock time and date at job start Tue Mar 31 2020 15:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47004 * 2 1 4 4 C 1.52996 * 109.47356 * 239.99683 * 2 1 3 5 5 C 1.53002 * 109.47116 * 175.00024 * 4 2 1 6 6 N 1.46497 * 109.46961 * 180.02562 * 5 4 2 7 7 S 1.65601 * 119.99823 * 165.00356 * 6 5 4 8 8 O 1.42099 * 106.40104 * 311.45397 * 7 6 5 9 9 O 1.42104 * 106.39901 * 178.53676 * 7 6 5 10 10 C 1.76194 * 107.22058 * 64.99882 * 7 6 5 11 11 C 1.38637 * 119.74766 * 269.72954 * 10 7 6 12 12 C 1.37622 * 120.24934 * 179.72129 * 11 10 7 13 13 C 1.40711 * 119.74255 * 0.56643 * 12 11 10 14 14 C 1.41400 * 120.24519 * 179.67986 * 13 12 11 15 15 H 1.08001 * 120.00194 * 204.40627 * 14 13 12 16 16 C 1.39944 * 119.99373 * 24.41192 * 14 13 12 17 17 N 1.30817 * 120.00582 * 17.84615 * 16 14 13 18 18 Si 1.86808 * 119.99683 * 197.84328 * 16 14 13 19 19 H 1.48494 * 109.46840 * 89.99921 * 18 16 14 20 20 H 1.48496 * 109.47317 * 210.00192 * 18 16 14 21 21 H 1.48504 * 109.46832 * 330.00254 * 18 16 14 22 22 C 1.40712 * 119.51307 * 359.70710 * 13 12 11 23 23 C 1.37625 * 119.74640 * 359.97438 * 22 13 12 24 24 N 1.46902 * 109.46548 * 119.99796 * 2 1 3 25 25 C 1.46895 * 111.00346 * 294.99779 * 24 2 1 26 26 C 1.46896 * 111.00065 * 58.95753 * 24 2 1 27 27 H 1.08996 * 109.47327 * 300.00234 * 1 2 3 28 28 H 1.09004 * 109.46642 * 60.00416 * 1 2 3 29 29 H 1.08999 * 109.47004 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.47087 * 55.00108 * 4 2 1 31 31 H 1.08999 * 109.47205 * 295.00748 * 4 2 1 32 32 H 1.09000 * 109.46851 * 60.00112 * 5 4 2 33 33 H 1.08999 * 109.47274 * 300.00075 * 5 4 2 34 34 H 0.97001 * 120.00037 * 344.99633 * 6 5 4 35 35 H 1.08000 * 119.87356 * 359.96820 * 11 10 7 36 36 H 1.07994 * 120.12883 * 180.27827 * 12 11 10 37 37 H 0.97002 * 120.00371 * 179.97438 * 17 16 14 38 38 H 1.08003 * 120.13403 * 179.97438 * 22 13 12 39 39 H 1.07994 * 119.87525 * 180.02562 * 23 22 13 40 40 H 1.09007 * 109.46622 * 60.00519 * 25 24 2 41 41 H 1.08992 * 109.47583 * 180.02562 * 25 24 2 42 42 H 1.08998 * 109.47412 * 300.00592 * 25 24 2 43 43 H 1.09000 * 109.47457 * 59.99571 * 26 24 2 44 44 H 1.09003 * 109.47024 * 179.97438 * 26 24 2 45 45 H 1.09004 * 109.47534 * 299.99762 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5650 -0.6133 -1.3135 6 7 4.0533 -1.3034 -2.5100 7 16 5.5999 -1.0442 -3.0421 8 8 5.7845 0.3645 -3.0680 9 8 5.7755 -1.8722 -4.1835 10 6 6.6885 -1.6661 -1.8041 11 6 7.1224 -0.8302 -0.7867 12 6 7.9682 -1.3067 0.1888 13 6 8.4021 -2.6445 0.1440 14 6 9.2766 -3.1432 1.1369 15 1 9.9111 -3.9902 0.9216 16 6 9.3196 -2.5393 2.3986 17 7 8.3399 -1.7641 2.7866 18 14 10.7761 -2.8403 3.5290 19 1 11.8189 -1.8138 3.2765 20 1 10.3309 -2.7564 4.9431 21 1 11.3363 -4.1902 3.2656 22 6 7.9599 -3.4821 -0.8966 23 6 7.1089 -2.9860 -1.8577 24 7 2.0196 -0.6925 1.1995 25 6 1.6487 0.0392 2.4181 26 6 1.5283 -2.0761 1.2460 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6055 -0.2618 -2.1370 31 1 1.7517 -1.7715 -1.2055 32 1 3.9995 -1.0728 -0.4258 33 1 3.8533 0.4369 -1.3572 34 1 3.4707 -1.9123 -2.9904 35 1 6.7921 0.1976 -0.7573 36 1 8.3014 -0.6551 0.9829 37 1 8.3695 -1.3458 3.6613 38 1 8.2870 -4.5105 -0.9409 39 1 6.7679 -3.6272 -2.6570 40 1 0.5631 0.1176 2.4784 41 1 2.0237 -0.4950 3.2910 42 1 2.0841 1.0380 2.3890 43 1 1.8762 -2.6150 0.3648 44 1 1.9059 -2.5657 2.1437 45 1 0.4384 -2.0743 1.2639 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697344523.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:10 Heat of formation + Delta-G solvation = -63.980231 kcal Electronic energy + Delta-G solvation = -26122.963945 eV Core-core repulsion = 22459.684691 eV Total energy + Delta-G solvation = -3663.279254 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -38.80998 -37.50969 -36.42378 -35.16767 -35.02998 -33.98240 -31.66132 -30.19575 -29.40216 -28.52193 -27.47926 -25.75835 -24.62904 -22.61681 -21.43997 -21.06266 -19.81153 -18.64956 -17.55935 -16.99649 -16.51309 -16.35318 -15.71825 -15.45605 -15.00121 -14.78762 -14.33777 -14.06395 -13.80366 -13.76221 -13.31393 -13.15925 -12.63063 -12.43026 -12.34645 -12.13322 -12.10371 -11.83935 -11.82059 -11.71805 -11.46012 -11.40678 -11.29392 -11.26578 -11.20404 -11.15525 -10.85714 -10.74534 -10.69432 -10.34772 -9.69864 -9.55629 -9.46039 -8.91119 -8.27321 -7.89823 -7.63420 -7.08875 -4.74672 1.35865 2.31564 2.90875 2.95047 2.95627 2.99192 3.70095 3.82550 3.91229 4.29166 4.60614 4.68618 4.86645 5.02935 5.16540 5.19404 5.28031 5.34133 5.42400 5.47062 5.48105 5.50874 5.63125 5.69326 5.82958 5.88325 5.91534 6.00620 6.08745 6.13212 6.19510 6.30323 6.48755 6.73522 6.76592 6.97632 7.01703 7.03265 7.11218 7.38841 7.43335 7.49234 7.70340 7.82856 8.02761 8.37810 8.57095 8.71218 9.82350 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.010015 B = 0.004306 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2795.267110 B = 6501.740671 C = 8623.753287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.079 3.921 3 H 0.087 0.913 4 C -0.119 4.119 5 C 0.126 3.874 6 N -1.129 6.129 7 S 2.695 3.305 8 O -0.986 6.986 9 O -0.990 6.990 10 C -0.785 4.785 11 C -0.014 4.014 12 C -0.181 4.181 13 C 0.140 3.860 14 C -0.438 4.438 15 H 0.087 0.913 16 C 0.073 3.927 17 N -0.764 5.764 18 Si 0.916 3.084 19 H -0.263 1.263 20 H -0.274 1.274 21 H -0.259 1.259 22 C -0.240 4.240 23 C 0.002 3.998 24 N -0.534 5.534 25 C 0.023 3.977 26 C 0.017 3.983 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.407 0.593 35 H 0.103 0.897 36 H 0.122 0.878 37 H 0.288 0.712 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.024 0.976 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.067 0.933 45 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.143 1.904 0.862 13.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.030 4.030 3 H 0.105 0.895 4 C -0.158 4.158 5 C 0.000 4.000 6 N -0.885 5.885 7 S 2.794 3.206 8 O -0.976 6.976 9 O -0.981 6.981 10 C -0.881 4.881 11 C -0.034 4.034 12 C -0.202 4.202 13 C 0.137 3.863 14 C -0.465 4.465 15 H 0.105 0.895 16 C -0.149 4.149 17 N -0.387 5.387 18 Si 0.739 3.261 19 H -0.188 1.188 20 H -0.199 1.199 21 H -0.183 1.183 22 C -0.260 4.260 23 C -0.018 4.018 24 N -0.257 5.257 25 C -0.125 4.125 26 C -0.131 4.131 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.239 0.761 35 H 0.121 0.879 36 H 0.140 0.860 37 H 0.099 0.901 38 H 0.117 0.883 39 H 0.121 0.879 40 H 0.043 0.957 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -12.412 2.588 0.332 12.683 hybrid contribution -0.460 -0.737 1.222 1.500 sum -12.872 1.850 1.554 13.097 Atomic orbital electron populations 1.22458 0.97618 1.02242 1.02237 1.21730 0.92419 0.98754 0.90124 0.89485 1.21874 0.95648 1.01354 0.96910 1.21157 0.94211 0.97219 0.87429 1.55721 1.32380 1.59979 1.40418 1.01135 0.72362 0.73280 0.73871 1.93474 1.85544 1.31226 1.87391 1.93481 1.85650 1.69829 1.49100 1.29152 1.29734 1.05592 1.23581 1.20256 0.94906 0.96358 0.91913 1.21319 1.03232 0.95940 0.99691 1.17841 0.87342 0.91087 0.90053 1.19935 1.18127 1.12911 0.95544 0.89530 1.26107 0.96532 0.93079 0.99170 1.69823 1.27981 1.21083 1.19791 0.86173 0.81052 0.80430 0.78444 1.18823 1.19913 1.18250 1.21037 1.06136 0.98664 1.00189 1.20151 0.94056 0.92326 0.95284 1.62174 1.59163 1.02432 1.01979 1.22399 0.98175 0.99356 0.92605 1.22487 0.97432 0.89947 1.03264 0.92436 0.91952 0.92245 0.91052 0.91081 0.90058 0.91011 0.76107 0.87927 0.86028 0.90060 0.88311 0.87897 0.95707 0.91330 0.91340 0.90820 0.91394 0.95580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.58 8.50 37.16 0.32 -1.26 16 2 C 0.08 0.82 2.35 -67.71 -0.16 0.66 16 3 H 0.09 0.91 8.13 -51.93 -0.42 0.49 16 4 C -0.12 -1.30 4.64 -26.73 -0.12 -1.42 16 5 C 0.13 1.81 6.11 -4.04 -0.02 1.79 16 6 N -1.13 -17.18 6.00 -10.61 -0.06 -17.25 16 7 S 2.69 52.82 5.73 -107.50 -0.62 52.21 16 8 O -0.99 -21.47 16.72 -57.17 -0.96 -22.43 16 9 O -0.99 -21.22 17.26 -57.17 -0.99 -22.20 16 10 C -0.78 -17.54 5.97 -39.29 -0.23 -17.77 16 11 C -0.01 -0.33 9.49 -39.66 -0.38 -0.71 16 12 C -0.18 -4.58 8.70 -38.87 -0.34 -4.92 16 13 C 0.14 3.59 5.57 -106.83 -0.60 3.00 16 14 C -0.44 -10.84 9.05 -37.74 -0.34 -11.19 16 15 H 0.09 2.04 7.91 -52.49 -0.42 1.62 16 16 C 0.07 1.70 5.14 -17.35 -0.09 1.61 16 17 N -0.76 -18.21 10.95 55.55 0.61 -17.60 16 18 Si 0.92 17.16 29.60 -169.99 -5.03 12.13 16 19 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 20 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 21 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 22 C -0.24 -5.75 9.80 -38.87 -0.38 -6.13 16 23 C 0.00 0.04 9.49 -39.66 -0.38 -0.33 16 24 N -0.53 -6.24 4.46 -243.18 -1.08 -7.33 16 25 C 0.02 0.23 9.31 60.06 0.56 0.79 16 26 C 0.02 0.18 8.82 60.06 0.53 0.71 16 27 H 0.06 0.47 6.52 -51.93 -0.34 0.13 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.50 6.39 -51.93 -0.33 0.17 16 30 H 0.07 0.70 8.14 -51.92 -0.42 0.27 16 31 H 0.07 0.73 6.17 -51.93 -0.32 0.41 16 32 H 0.08 1.32 7.75 -51.93 -0.40 0.92 16 33 H 0.07 1.07 7.75 -51.93 -0.40 0.67 16 34 H 0.41 5.12 8.65 -34.47 -0.30 4.82 16 35 H 0.10 2.25 7.59 -52.49 -0.40 1.85 16 36 H 0.12 3.11 6.15 -52.49 -0.32 2.79 16 37 H 0.29 6.16 8.30 -40.82 -0.34 5.82 16 38 H 0.10 2.18 8.06 -52.48 -0.42 1.76 16 39 H 0.10 2.12 7.60 -52.49 -0.40 1.72 16 40 H 0.02 0.22 6.44 -51.92 -0.33 -0.12 16 41 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.81 6.22 -51.93 -0.32 0.48 16 44 H 0.07 0.74 8.12 -51.93 -0.42 0.32 16 45 H 0.03 0.24 6.28 -51.93 -0.33 -0.08 16 LS Contribution 371.57 15.07 5.60 5.60 Total: -1.00 -30.07 371.57 -10.87 -40.94 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -6.70 Total: 11.11 kcal Atomic # 6 Polarization: -33.54 SS G_CDS: -1.64 Total: -35.18 kcal Atomic # 7 Polarization: -41.64 SS G_CDS: -0.54 Total: -42.18 kcal Atomic # 8 Polarization: -42.69 SS G_CDS: -1.94 Total: -44.63 kcal Atomic # 14 Polarization: 17.16 SS G_CDS: -5.03 Total: 12.13 kcal Atomic # 16 Polarization: 52.82 SS G_CDS: -0.62 Total: 52.21 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.07 -10.87 -40.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697344523.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.038 kcal (2) G-P(sol) polarization free energy of solvation -30.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds