Wall clock time and date at job start Tue Mar 31 2020 15:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47004 * 2 1 4 4 C 1.52996 * 109.47356 * 239.99683 * 2 1 3 5 5 C 1.53002 * 109.47116 * 175.00024 * 4 2 1 6 6 N 1.46497 * 109.46961 * 180.02562 * 5 4 2 7 7 S 1.65601 * 119.99823 * 165.00356 * 6 5 4 8 8 O 1.42099 * 106.40104 * 311.45397 * 7 6 5 9 9 O 1.42104 * 106.39901 * 178.53676 * 7 6 5 10 10 C 1.76194 * 107.22058 * 64.99882 * 7 6 5 11 11 C 1.38637 * 119.74766 * 269.72954 * 10 7 6 12 12 C 1.37622 * 120.24934 * 179.72129 * 11 10 7 13 13 C 1.40711 * 119.74255 * 0.56643 * 12 11 10 14 14 C 1.41400 * 120.24519 * 179.67986 * 13 12 11 15 15 H 1.08001 * 120.00194 * 204.40627 * 14 13 12 16 16 C 1.39944 * 119.99373 * 24.41192 * 14 13 12 17 17 N 1.30817 * 120.00582 * 17.84615 * 16 14 13 18 18 Si 1.86808 * 119.99683 * 197.84328 * 16 14 13 19 19 H 1.48494 * 109.46840 * 89.99921 * 18 16 14 20 20 H 1.48496 * 109.47317 * 210.00192 * 18 16 14 21 21 H 1.48504 * 109.46832 * 330.00254 * 18 16 14 22 22 C 1.40712 * 119.51307 * 359.70710 * 13 12 11 23 23 C 1.37625 * 119.74640 * 359.97438 * 22 13 12 24 24 N 1.46902 * 109.46548 * 119.99796 * 2 1 3 25 25 C 1.46895 * 111.00346 * 294.99779 * 24 2 1 26 26 C 1.46896 * 111.00065 * 58.95753 * 24 2 1 27 27 H 1.08996 * 109.47327 * 300.00234 * 1 2 3 28 28 H 1.09004 * 109.46642 * 60.00416 * 1 2 3 29 29 H 1.08999 * 109.47004 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.47087 * 55.00108 * 4 2 1 31 31 H 1.08999 * 109.47205 * 295.00748 * 4 2 1 32 32 H 1.09000 * 109.46851 * 60.00112 * 5 4 2 33 33 H 1.08999 * 109.47274 * 300.00075 * 5 4 2 34 34 H 0.97001 * 120.00037 * 344.99633 * 6 5 4 35 35 H 1.08000 * 119.87356 * 359.96820 * 11 10 7 36 36 H 1.07994 * 120.12883 * 180.27827 * 12 11 10 37 37 H 0.97002 * 120.00371 * 179.97438 * 17 16 14 38 38 H 1.08003 * 120.13403 * 179.97438 * 22 13 12 39 39 H 1.07994 * 119.87525 * 180.02562 * 23 22 13 40 40 H 1.09007 * 109.46622 * 60.00519 * 25 24 2 41 41 H 1.08992 * 109.47583 * 180.02562 * 25 24 2 42 42 H 1.08998 * 109.47412 * 300.00592 * 25 24 2 43 43 H 1.09000 * 109.47457 * 59.99571 * 26 24 2 44 44 H 1.09003 * 109.47024 * 179.97438 * 26 24 2 45 45 H 1.09004 * 109.47534 * 299.99762 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5650 -0.6133 -1.3135 6 7 4.0533 -1.3034 -2.5100 7 16 5.5999 -1.0442 -3.0421 8 8 5.7845 0.3645 -3.0680 9 8 5.7755 -1.8722 -4.1835 10 6 6.6885 -1.6661 -1.8041 11 6 7.1224 -0.8302 -0.7867 12 6 7.9682 -1.3067 0.1888 13 6 8.4021 -2.6445 0.1440 14 6 9.2766 -3.1432 1.1369 15 1 9.9111 -3.9902 0.9216 16 6 9.3196 -2.5393 2.3986 17 7 8.3399 -1.7641 2.7866 18 14 10.7761 -2.8403 3.5290 19 1 11.8189 -1.8138 3.2765 20 1 10.3309 -2.7564 4.9431 21 1 11.3363 -4.1902 3.2656 22 6 7.9599 -3.4821 -0.8966 23 6 7.1089 -2.9860 -1.8577 24 7 2.0196 -0.6925 1.1995 25 6 1.6487 0.0392 2.4181 26 6 1.5283 -2.0761 1.2460 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6055 -0.2618 -2.1370 31 1 1.7517 -1.7715 -1.2055 32 1 3.9995 -1.0728 -0.4258 33 1 3.8533 0.4369 -1.3572 34 1 3.4707 -1.9123 -2.9904 35 1 6.7921 0.1976 -0.7573 36 1 8.3014 -0.6551 0.9829 37 1 8.3695 -1.3458 3.6613 38 1 8.2870 -4.5105 -0.9409 39 1 6.7679 -3.6272 -2.6570 40 1 0.5631 0.1176 2.4784 41 1 2.0237 -0.4950 3.2910 42 1 2.0841 1.0380 2.3890 43 1 1.8762 -2.6150 0.3648 44 1 1.9059 -2.5657 2.1437 45 1 0.4384 -2.0743 1.2639 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697344523.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:10 Heat of formation + Delta-G solvation = -84.496496 kcal Electronic energy + Delta-G solvation = -26123.853597 eV Core-core repulsion = 22459.684691 eV Total energy + Delta-G solvation = -3664.168906 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.66399 -39.34766 -38.10829 -36.75839 -36.34711 -35.77322 -32.58054 -32.03650 -31.26201 -29.42033 -28.32612 -27.59087 -25.48335 -23.70342 -23.23308 -22.90951 -20.80641 -20.07205 -19.39407 -18.56546 -18.11590 -17.28073 -17.15869 -17.07095 -15.96126 -15.88212 -15.80131 -15.55837 -15.17976 -14.92526 -14.80116 -14.51553 -14.08501 -13.94819 -13.58293 -13.50555 -13.39666 -13.15068 -13.07126 -12.98239 -12.88839 -12.86386 -12.74442 -12.66488 -12.57046 -12.30200 -12.12571 -11.96929 -11.79791 -11.54821 -11.52014 -11.28585 -11.20875 -10.28797 -9.75908 -9.51647 -9.09165 -8.84235 -6.62339 -0.24708 0.51729 1.08850 1.36655 1.44757 1.51403 2.12885 2.29740 2.56042 2.97610 3.11128 3.55955 3.61978 3.88432 4.01413 4.22411 4.27737 4.33412 4.35939 4.42628 4.51585 4.51724 4.69380 4.71245 4.76188 4.81914 4.88946 4.91849 4.97345 5.02186 5.08387 5.12106 5.14111 5.23116 5.27155 5.35177 5.40147 5.55168 5.62341 5.79556 5.95691 6.17850 6.19606 6.23084 6.28730 6.51812 6.71004 6.83970 8.10585 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.010015 B = 0.004306 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2795.267110 B = 6501.740671 C = 8623.753287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.078 3.922 3 H 0.083 0.917 4 C -0.112 4.112 5 C 0.123 3.877 6 N -1.110 6.110 7 S 2.727 3.273 8 O -1.005 7.005 9 O -1.004 7.004 10 C -0.795 4.795 11 C -0.018 4.018 12 C -0.205 4.205 13 C 0.112 3.888 14 C -0.469 4.469 15 H 0.090 0.910 16 C 0.036 3.964 17 N -0.793 5.793 18 Si 0.990 3.010 19 H -0.261 1.261 20 H -0.263 1.263 21 H -0.254 1.254 22 C -0.258 4.258 23 C -0.002 4.002 24 N -0.560 5.560 25 C 0.024 3.976 26 C 0.018 3.982 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.423 0.577 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.298 0.702 38 H 0.110 0.890 39 H 0.125 0.875 40 H 0.040 0.960 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.058 0.942 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.458 1.774 0.788 14.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.031 4.031 3 H 0.101 0.899 4 C -0.151 4.151 5 C -0.002 4.002 6 N -0.871 5.871 7 S 2.822 3.178 8 O -0.995 6.995 9 O -0.994 6.994 10 C -0.888 4.888 11 C -0.038 4.038 12 C -0.226 4.226 13 C 0.109 3.891 14 C -0.495 4.495 15 H 0.108 0.892 16 C -0.184 4.184 17 N -0.416 5.416 18 Si 0.809 3.191 19 H -0.186 1.186 20 H -0.187 1.187 21 H -0.178 1.178 22 C -0.278 4.278 23 C -0.022 4.022 24 N -0.284 5.284 25 C -0.124 4.124 26 C -0.130 4.130 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.109 0.891 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.259 0.741 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.109 0.891 38 H 0.128 0.872 39 H 0.143 0.857 40 H 0.059 0.941 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.077 0.923 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -13.721 2.436 0.260 13.938 hybrid contribution -0.158 -0.659 1.188 1.368 sum -13.878 1.778 1.449 14.067 Atomic orbital electron populations 1.22368 0.95715 1.02645 1.02996 1.21745 0.93864 0.98242 0.89276 0.89870 1.21863 0.92706 1.02395 0.98130 1.21240 0.96758 0.96363 0.85881 1.55275 1.30689 1.60351 1.40800 1.00217 0.72624 0.72341 0.72629 1.93451 1.86251 1.32385 1.87415 1.93457 1.86301 1.70085 1.49561 1.29646 1.30339 1.05365 1.23458 1.20422 0.94403 0.97057 0.91896 1.21325 1.04722 0.96125 1.00402 1.18184 0.88209 0.91553 0.91155 1.20221 1.18866 1.13921 0.96526 0.89188 1.26967 0.98941 0.92345 1.00100 1.69853 1.29533 1.21498 1.20727 0.85078 0.77137 0.80330 0.76558 1.18552 1.18713 1.17756 1.21267 1.06769 0.99259 1.00539 1.20449 0.93436 0.92858 0.95451 1.62158 1.60283 1.03077 1.02902 1.22383 0.99129 0.98975 0.91923 1.22455 0.98412 0.89483 1.02624 0.92098 0.90799 0.91955 0.89133 0.90138 0.92176 0.91616 0.74093 0.86980 0.87231 0.89096 0.87174 0.85678 0.94149 0.91945 0.91502 0.91270 0.92269 0.93906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.53 8.50 71.98 0.61 -1.92 16 2 C 0.08 1.48 2.35 44.92 0.11 1.58 16 3 H 0.08 1.63 8.13 -2.39 -0.02 1.61 16 4 C -0.11 -2.19 4.64 30.59 0.14 -2.05 16 5 C 0.12 3.42 6.11 86.38 0.53 3.94 16 6 N -1.11 -31.89 6.00 -187.49 -1.12 -33.01 16 7 S 2.73 103.84 5.73 -56.49 -0.32 103.52 16 8 O -1.00 -42.84 16.72 -128.00 -2.14 -44.98 16 9 O -1.00 -41.33 17.26 -128.00 -2.21 -43.54 16 10 C -0.80 -35.56 5.97 22.46 0.13 -35.43 16 11 C -0.02 -0.85 9.49 22.22 0.21 -0.64 16 12 C -0.21 -10.76 8.70 22.73 0.20 -10.56 16 13 C 0.11 5.94 5.57 -21.29 -0.12 5.82 16 14 C -0.47 -23.79 9.05 23.46 0.21 -23.58 16 15 H 0.09 4.33 7.91 -2.91 -0.02 4.31 16 16 C 0.04 1.69 5.14 85.26 0.44 2.13 16 17 N -0.79 -38.59 10.95 21.83 0.24 -38.35 16 18 Si 0.99 35.00 29.60 68.60 2.03 37.03 16 19 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16 20 H -0.26 -8.74 7.11 99.48 0.71 -8.04 16 21 H -0.25 -8.72 7.11 99.48 0.71 -8.01 16 22 C -0.26 -12.59 9.80 22.73 0.22 -12.37 16 23 C 0.00 -0.10 9.49 22.22 0.21 0.11 16 24 N -0.56 -12.61 4.46 -923.29 -4.12 -16.72 16 25 C 0.02 0.47 9.31 127.69 1.19 1.65 16 26 C 0.02 0.37 8.82 127.69 1.13 1.50 16 27 H 0.06 0.84 6.52 -2.39 -0.02 0.82 16 28 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 29 H 0.06 0.86 6.39 -2.39 -0.02 0.84 16 30 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 31 H 0.08 1.45 6.17 -2.39 -0.01 1.44 16 32 H 0.06 1.95 7.75 -2.39 -0.02 1.93 16 33 H 0.07 1.91 7.75 -2.39 -0.02 1.89 16 34 H 0.42 9.56 8.65 -96.74 -0.84 8.73 16 35 H 0.11 5.02 7.59 -2.91 -0.02 5.00 16 36 H 0.11 5.87 6.15 -2.91 -0.02 5.86 16 37 H 0.30 12.88 8.30 -92.71 -0.77 12.11 16 38 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 39 H 0.13 5.01 7.60 -2.91 -0.02 4.98 16 40 H 0.04 0.65 6.44 -2.38 -0.02 0.63 16 41 H 0.06 1.26 8.12 -2.39 -0.02 1.24 16 42 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.07 1.44 6.22 -2.39 -0.01 1.42 16 44 H 0.06 1.28 8.12 -2.39 -0.02 1.26 16 45 H 0.04 0.71 6.28 -2.38 -0.01 0.70 16 Total: -1.00 -64.74 371.57 -2.27 -67.01 By element: Atomic # 1 Polarization: 38.71 SS G_CDS: 0.16 Total: 38.87 kcal Atomic # 6 Polarization: -75.03 SS G_CDS: 5.21 Total: -69.82 kcal Atomic # 7 Polarization: -83.08 SS G_CDS: -5.00 Total: -88.08 kcal Atomic # 8 Polarization: -84.17 SS G_CDS: -4.35 Total: -88.52 kcal Atomic # 14 Polarization: 35.00 SS G_CDS: 2.03 Total: 37.03 kcal Atomic # 16 Polarization: 103.84 SS G_CDS: -0.32 Total: 103.52 kcal Total: -64.74 -2.27 -67.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697344523.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.485 kcal (2) G-P(sol) polarization free energy of solvation -64.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds