Wall clock time and date at job start Tue Mar 31 2020 15:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46943 * 2 1 4 4 C 1.53000 * 109.46936 * 119.99253 * 2 1 3 5 5 C 1.53003 * 109.47268 * 182.68035 * 4 2 1 6 6 N 1.46494 * 109.47331 * 174.98068 * 5 4 2 7 7 S 1.65597 * 120.00286 * 165.00244 * 6 5 4 8 8 O 1.42100 * 106.40654 * 178.54005 * 7 6 5 9 9 O 1.42103 * 106.40160 * 311.45760 * 7 6 5 10 10 C 1.76203 * 107.21945 * 64.99731 * 7 6 5 11 11 C 1.38640 * 119.74453 * 269.73430 * 10 7 6 12 12 C 1.37617 * 120.24183 * 179.72223 * 11 10 7 13 13 C 1.40720 * 119.74845 * 0.56484 * 12 11 10 14 14 C 1.41395 * 120.24619 * 179.68207 * 13 12 11 15 15 H 1.07998 * 119.99993 * 205.73252 * 14 13 12 16 16 C 1.39944 * 120.00004 * 25.73332 * 14 13 12 17 17 N 1.30826 * 119.99742 * 16.42479 * 16 14 13 18 18 Si 1.86797 * 120.00295 * 196.42082 * 16 14 13 19 19 H 1.48502 * 109.47066 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47194 * 119.99731 * 18 16 14 21 21 H 1.48499 * 109.47493 * 240.00395 * 18 16 14 22 22 C 1.40718 * 119.50911 * 359.70881 * 13 12 11 23 23 C 1.37615 * 119.74218 * 359.97438 * 22 13 12 24 24 N 1.46893 * 109.47221 * 239.99519 * 2 1 3 25 25 C 1.46900 * 111.00238 * 69.16236 * 24 2 1 26 26 C 1.46898 * 111.00185 * 305.20810 * 24 2 1 27 27 H 1.08996 * 109.47398 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47487 * 300.00434 * 1 2 3 29 29 H 1.09005 * 109.46957 * 60.00961 * 1 2 3 30 30 H 1.08999 * 109.47497 * 302.68270 * 4 2 1 31 31 H 1.09006 * 109.46950 * 62.67999 * 4 2 1 32 32 H 1.09009 * 109.46748 * 294.98178 * 5 4 2 33 33 H 1.08995 * 109.46780 * 54.97580 * 5 4 2 34 34 H 0.97003 * 120.00263 * 344.99623 * 6 5 4 35 35 H 1.07993 * 119.87819 * 359.97166 * 11 10 7 36 36 H 1.08003 * 120.12629 * 180.27331 * 12 11 10 37 37 H 0.97006 * 119.99700 * 179.97438 * 17 16 14 38 38 H 1.07998 * 120.12447 * 179.97438 * 22 13 12 39 39 H 1.08000 * 119.87478 * 180.02562 * 23 22 13 40 40 H 1.09004 * 109.46881 * 54.46213 * 25 24 2 41 41 H 1.08997 * 109.46849 * 294.46395 * 25 24 2 42 42 H 1.08998 * 109.47143 * 174.46468 * 25 24 2 43 43 H 1.08996 * 109.47302 * 180.02562 * 26 24 2 44 44 H 1.09005 * 109.47279 * 299.99914 * 26 24 2 45 45 H 1.09001 * 109.47083 * 59.99828 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 3.5685 -0.6630 1.2836 6 7 4.0514 -1.2471 2.5372 7 16 5.6471 -1.6598 2.6979 8 8 5.8014 -2.1593 4.0192 9 8 5.9864 -2.4092 1.5392 10 6 6.5822 -0.1685 2.6174 11 6 7.0411 0.2904 1.3922 12 6 7.7674 1.4568 1.3168 13 6 8.0541 2.1780 2.4907 14 6 8.8052 3.3742 2.4261 15 1 9.3725 3.7025 3.2845 16 6 8.8137 4.1325 1.2500 17 7 7.9008 3.9305 0.3349 18 14 10.1281 5.4334 0.9868 19 1 11.0360 5.4645 2.1616 20 1 10.9095 5.1078 -0.2333 21 1 9.4845 6.7615 0.8228 22 6 7.5880 1.6996 3.7293 23 6 6.8579 0.5343 3.7801 24 7 2.0197 -0.6926 -1.1993 25 6 1.7352 0.0878 -2.4110 26 6 1.4497 -2.0429 -1.2971 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8901 30 1 1.6379 -0.2357 2.1386 31 1 1.7163 -1.7617 1.2257 32 1 3.9724 -1.2251 0.4415 33 1 3.8941 0.3751 1.2172 34 1 3.4366 -1.3921 3.2734 35 1 6.8243 -0.2675 0.4933 36 1 8.1202 1.8148 0.3609 37 1 7.9065 4.4564 -0.4802 38 1 7.8026 2.2450 4.6364 39 1 6.4988 0.1654 4.7295 40 1 2.1441 1.0922 -2.3005 41 1 0.6571 0.1487 -2.5591 42 1 2.1935 -0.3983 -3.2722 43 1 1.8291 -2.5334 -2.1935 44 1 1.7343 -2.6220 -0.4185 45 1 0.3631 -1.9756 -1.3515 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697344525.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:13 Heat of formation + Delta-G solvation = -85.550964 kcal Electronic energy + Delta-G solvation = -25968.138186 eV Core-core repulsion = 22303.923555 eV Total energy + Delta-G solvation = -3664.214631 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.64522 -39.36265 -38.10409 -36.75477 -36.35950 -35.77244 -32.60133 -32.04295 -31.27811 -29.34297 -28.39246 -27.59781 -25.45757 -23.70929 -23.24161 -22.92129 -20.79032 -20.10905 -19.40154 -18.59290 -18.11493 -17.31817 -17.15678 -17.00191 -15.94814 -15.82784 -15.81032 -15.61406 -15.12400 -14.99099 -14.80950 -14.46804 -14.08753 -13.94529 -13.63714 -13.52836 -13.38648 -13.15391 -13.08084 -12.98963 -12.89358 -12.85186 -12.75994 -12.64055 -12.59063 -12.25919 -12.06701 -11.95978 -11.87360 -11.59230 -11.52187 -11.29084 -11.22436 -10.28596 -9.75831 -9.53146 -9.12135 -8.84475 -6.63480 -0.25106 0.49867 1.07146 1.36842 1.42766 1.53436 2.12919 2.29570 2.55935 2.97272 3.10435 3.54284 3.61575 3.90018 4.01452 4.19717 4.31961 4.33824 4.34230 4.42905 4.46886 4.55933 4.70617 4.73108 4.76070 4.83257 4.88639 4.91174 4.96934 5.01079 5.07954 5.11861 5.13904 5.21140 5.25678 5.33995 5.38960 5.54599 5.60751 5.78159 5.94881 6.17002 6.19313 6.21781 6.28768 6.51050 6.70214 6.82497 8.10865 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.011091 B = 0.003828 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.960628 B = 7312.378583 C = 9078.737693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.077 3.923 3 H 0.077 0.923 4 C -0.110 4.110 5 C 0.126 3.874 6 N -1.110 6.110 7 S 2.726 3.274 8 O -1.003 7.003 9 O -1.004 7.004 10 C -0.795 4.795 11 C -0.019 4.019 12 C -0.204 4.204 13 C 0.112 3.888 14 C -0.468 4.468 15 H 0.090 0.910 16 C 0.035 3.965 17 N -0.797 5.797 18 Si 0.990 3.010 19 H -0.255 1.255 20 H -0.262 1.262 21 H -0.261 1.261 22 C -0.257 4.257 23 C -0.003 4.003 24 N -0.560 5.560 25 C 0.024 3.976 26 C 0.017 3.983 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.423 0.577 35 H 0.113 0.887 36 H 0.110 0.890 37 H 0.298 0.702 38 H 0.111 0.889 39 H 0.126 0.874 40 H 0.062 0.938 41 H 0.037 0.963 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.097 -3.244 -3.552 14.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.032 4.032 3 H 0.096 0.904 4 C -0.149 4.149 5 C 0.000 4.000 6 N -0.872 5.872 7 S 2.821 3.179 8 O -0.994 6.994 9 O -0.994 6.994 10 C -0.887 4.887 11 C -0.039 4.039 12 C -0.225 4.225 13 C 0.109 3.891 14 C -0.496 4.496 15 H 0.108 0.892 16 C -0.184 4.184 17 N -0.420 5.420 18 Si 0.810 3.190 19 H -0.178 1.178 20 H -0.187 1.187 21 H -0.185 1.185 22 C -0.277 4.277 23 C -0.023 4.023 24 N -0.284 5.284 25 C -0.124 4.124 26 C -0.131 4.131 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.107 0.893 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.259 0.741 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.109 0.891 38 H 0.129 0.871 39 H 0.144 0.856 40 H 0.081 0.919 41 H 0.056 0.944 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -13.254 -4.059 -3.798 14.372 hybrid contribution -0.327 1.418 -0.119 1.460 sum -13.581 -2.641 -3.917 14.379 Atomic orbital electron populations 1.22361 0.95651 1.02772 1.02839 1.21738 0.93908 0.97982 0.89579 0.90443 1.21827 0.92630 1.02308 0.98118 1.21203 0.96852 0.97711 0.84227 1.55291 1.26936 1.81026 1.23903 1.00249 0.72602 0.73448 0.71597 1.93456 1.86338 1.79985 1.39623 1.93459 1.83816 1.70034 1.52078 1.29672 1.31397 1.28057 0.99611 1.20439 0.94052 0.94370 0.95011 1.21331 1.06220 0.96044 0.98869 1.18203 0.87241 0.91654 0.92011 1.20232 1.24476 1.04994 0.99848 0.89181 1.26970 0.97218 1.00294 0.93904 1.69852 1.28916 1.35618 1.07656 0.85022 0.77625 0.76685 0.79683 1.17838 1.18694 1.18501 1.21292 1.08303 1.00558 0.97550 1.20464 0.93463 0.92533 0.95793 1.62166 1.59598 1.03656 1.02995 1.22382 0.99488 0.98300 0.92217 1.22490 0.97934 0.89883 1.02805 0.91555 0.91056 0.92305 0.89257 0.90112 0.90943 0.93093 0.74077 0.86953 0.87234 0.89118 0.87061 0.85583 0.91922 0.94439 0.91272 0.91487 0.91325 0.93957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.57 8.45 71.98 0.61 -1.97 16 2 C 0.08 1.49 2.34 44.92 0.11 1.59 16 3 H 0.08 1.66 8.01 -2.39 -0.02 1.64 16 4 C -0.11 -2.18 4.69 30.60 0.14 -2.03 16 5 C 0.13 3.52 6.02 86.38 0.52 4.04 16 6 N -1.11 -32.05 6.00 -187.49 -1.12 -33.18 16 7 S 2.73 104.28 5.73 -56.49 -0.32 103.96 16 8 O -1.00 -41.41 17.26 -128.00 -2.21 -43.62 16 9 O -1.00 -43.27 16.72 -128.00 -2.14 -45.42 16 10 C -0.79 -35.46 5.97 22.46 0.13 -35.32 16 11 C -0.02 -0.90 9.49 22.22 0.21 -0.69 16 12 C -0.20 -10.66 8.69 22.73 0.20 -10.46 16 13 C 0.11 5.90 5.56 -21.29 -0.12 5.79 16 14 C -0.47 -23.68 9.06 23.46 0.21 -23.47 16 15 H 0.09 4.32 7.90 -2.91 -0.02 4.30 16 16 C 0.04 1.64 5.16 85.26 0.44 2.08 16 17 N -0.80 -38.58 10.96 21.83 0.24 -38.34 16 18 Si 0.99 34.86 29.59 68.60 2.03 36.89 16 19 H -0.26 -8.81 7.11 99.48 0.71 -8.10 16 20 H -0.26 -8.95 7.11 99.48 0.71 -8.24 16 21 H -0.26 -8.69 7.11 99.48 0.71 -7.99 16 22 C -0.26 -12.45 9.80 22.73 0.22 -12.23 16 23 C 0.00 -0.13 9.49 22.22 0.21 0.09 16 24 N -0.56 -11.83 4.42 -923.30 -4.08 -15.91 16 25 C 0.02 0.44 9.27 127.69 1.18 1.63 16 26 C 0.02 0.30 8.79 127.69 1.12 1.42 16 27 H 0.07 0.89 6.33 -2.39 -0.02 0.87 16 28 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.06 0.83 6.78 -2.38 -0.02 0.82 16 30 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.08 1.44 6.41 -2.38 -0.02 1.43 16 32 H 0.07 2.26 7.44 -2.38 -0.02 2.25 16 33 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.42 9.56 8.65 -96.75 -0.84 8.72 16 35 H 0.11 5.06 7.59 -2.91 -0.02 5.03 16 36 H 0.11 5.85 6.20 -2.91 -0.02 5.83 16 37 H 0.30 12.75 8.30 -92.70 -0.77 11.98 16 38 H 0.11 4.95 8.06 -2.91 -0.02 4.93 16 39 H 0.13 5.01 7.60 -2.91 -0.02 4.98 16 40 H 0.06 1.22 8.03 -2.38 -0.02 1.20 16 41 H 0.04 0.58 6.83 -2.39 -0.02 0.56 16 42 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.07 1.25 6.39 -2.38 -0.02 1.24 16 45 H 0.04 0.62 6.22 -2.39 -0.01 0.61 16 Total: -1.00 -64.57 372.22 -2.26 -66.82 By element: Atomic # 1 Polarization: 38.17 SS G_CDS: 0.16 Total: 38.33 kcal Atomic # 6 Polarization: -74.73 SS G_CDS: 5.19 Total: -69.54 kcal Atomic # 7 Polarization: -82.46 SS G_CDS: -4.97 Total: -87.43 kcal Atomic # 8 Polarization: -84.69 SS G_CDS: -4.35 Total: -89.04 kcal Atomic # 14 Polarization: 34.86 SS G_CDS: 2.03 Total: 36.89 kcal Atomic # 16 Polarization: 104.28 SS G_CDS: -0.32 Total: 103.96 kcal Total: -64.57 -2.26 -66.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697344525.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.728 kcal (2) G-P(sol) polarization free energy of solvation -64.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds