Wall clock time and date at job start Tue Mar 31 2020 15:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47010 * 2 1 4 4 C 1.47198 * 109.46983 * 119.99388 * 2 1 3 5 5 N 2.60801 * 109.46929 * 119.99409 * 2 1 3 6 6 C 1.52997 * 109.47412 * 239.99697 * 2 1 3 7 7 N 1.46895 * 109.47357 * 65.00171 * 6 2 1 8 8 C 1.46895 * 111.00132 * 66.04071 * 7 6 2 9 9 C 1.46903 * 111.00272 * 190.00299 * 7 6 2 10 10 C 1.50697 * 109.47179 * 169.99583 * 9 7 6 11 11 N 1.29825 * 118.34897 * 359.97438 * 10 9 7 12 12 C 1.35634 * 121.62648 * 180.02562 * 11 10 9 13 13 C 1.39635 * 121.62692 * 180.02562 * 12 11 10 14 14 C 1.37712 * 119.69167 * 179.97438 * 13 12 11 15 15 C 1.38872 * 120.83313 * 0.02562 * 14 13 12 16 16 C 1.37799 * 120.56367 * 359.97438 * 15 14 13 17 17 C 1.39364 * 119.52081 * 0.02562 * 16 15 14 18 18 C 1.46959 * 121.90337 * 180.02562 * 17 16 15 19 19 O 1.21722 * 121.29118 * 359.97438 * 18 17 16 20 20 N 1.35346 * 117.42341 * 179.97438 * 18 17 16 21 21 C 1.37111 * 119.71782 * 180.02562 * 20 18 17 22 22 H 1.07994 * 120.00446 * 134.78686 * 21 20 18 23 23 C 1.39081 * 119.99397 * 314.78919 * 21 20 18 24 24 N 1.31258 * 119.99403 * 160.64138 * 23 21 20 25 25 Si 1.86798 * 120.00228 * 340.63854 * 23 21 20 26 26 H 1.48500 * 109.47053 * 95.24881 * 25 23 21 27 27 H 1.48502 * 109.46838 * 215.24309 * 25 23 21 28 28 H 1.48498 * 109.47402 * 335.24507 * 25 23 21 29 29 H 1.09003 * 109.47010 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47150 * 300.00418 * 1 2 3 31 31 H 1.08999 * 109.46872 * 60.00729 * 1 2 3 32 32 H 1.09005 * 109.46837 * 304.99557 * 6 2 1 33 33 H 1.09004 * 109.47007 * 185.00110 * 6 2 1 34 34 H 1.08999 * 109.47245 * 183.95195 * 8 7 6 35 35 H 1.08994 * 109.47725 * 303.96031 * 8 7 6 36 36 H 1.09005 * 109.46774 * 63.96354 * 8 7 6 37 37 H 1.09000 * 109.47137 * 49.99623 * 9 7 6 38 38 H 1.09001 * 109.46547 * 289.99827 * 9 7 6 39 39 H 1.07997 * 120.15157 * 359.97438 * 13 12 11 40 40 H 1.08004 * 119.58152 * 180.27490 * 14 13 12 41 41 H 1.07996 * 119.72197 * 179.97438 * 15 14 13 42 42 H 1.08004 * 120.23454 * 180.02562 * 16 15 14 43 43 H 0.96997 * 119.99848 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0206 -0.6938 1.2019 5 7 2.3993 -1.2292 2.1296 6 6 2.0401 -0.7213 -1.2492 7 7 1.6516 0.0373 -2.4456 8 6 2.3341 1.3373 -2.4894 9 6 1.9126 -0.7360 -3.6671 10 6 1.2832 -0.0401 -4.8463 11 7 0.6412 1.0687 -4.6370 12 6 0.0490 1.7497 -5.6496 13 6 -0.6411 2.9425 -5.4247 14 6 -1.2270 3.6015 -6.4825 15 6 -1.1412 3.0946 -7.7725 16 6 -0.4657 1.9192 -8.0200 17 6 0.1344 1.2366 -6.9636 18 6 0.8679 -0.0204 -7.1680 19 8 0.9786 -0.5150 -8.2746 20 7 1.4156 -0.6068 -6.0780 21 6 2.1106 -1.7807 -6.2148 22 1 3.0608 -1.9070 -5.7173 23 6 1.5919 -2.8090 -6.9946 24 7 2.3826 -3.7569 -7.4410 25 14 -0.2298 -2.8411 -7.4065 26 1 -0.4486 -2.2098 -8.7327 27 1 -0.7041 -4.2478 -7.4436 28 1 -0.9848 -2.0913 -6.3707 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 1.6055 -1.7199 -1.2950 33 1 3.1264 -0.7995 -1.2054 34 1 1.9761 1.9069 -3.3470 35 1 2.1240 1.8891 -1.5733 36 1 3.4090 1.1803 -2.5807 37 1 1.4859 -1.7336 -3.5637 38 1 2.9884 -0.8154 -3.8237 39 1 -0.7150 3.3464 -4.4258 40 1 -1.7565 4.5264 -6.3071 41 1 -1.6078 3.6259 -8.5887 42 1 -0.4020 1.5300 -9.0254 43 1 2.0209 -4.4742 -7.9845 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728915682.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:57 Heat of formation + Delta-G solvation = 66.595903 kcal Electronic energy + Delta-G solvation = -27790.685403 eV Core-core repulsion = 24029.917155 eV Total energy + Delta-G solvation = -3760.768248 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.92994 -38.53458 -37.89871 -37.01314 -35.99212 -33.97358 -33.18316 -32.28904 -30.69429 -29.68565 -27.52386 -26.95127 -25.93351 -24.66441 -23.11481 -22.26224 -21.40191 -20.59913 -18.91868 -18.09632 -17.70543 -17.23547 -16.14380 -15.55986 -15.40907 -15.27263 -14.69830 -14.48858 -14.47714 -14.14101 -13.99141 -13.55384 -13.35777 -13.21347 -13.13864 -12.95348 -12.82819 -12.69382 -12.37979 -12.25047 -11.97803 -11.67027 -11.63776 -11.51325 -11.37145 -11.24407 -11.12094 -10.86835 -10.75155 -10.67412 -10.34751 -9.46107 -9.14962 -9.00833 -8.83740 -8.57895 -8.15120 -7.31222 -6.81114 -4.66484 1.22453 1.37072 2.61511 2.68414 2.88399 3.06443 3.16679 3.27822 3.47294 3.53640 3.85250 4.06329 4.36111 4.50113 4.60604 4.67886 4.84798 4.89669 5.09387 5.11736 5.22564 5.33250 5.44294 5.50075 5.57385 5.66040 5.67511 5.76592 5.80033 5.87796 5.89388 5.93705 5.99015 6.21373 6.27404 6.39299 6.51467 6.58719 6.81631 6.84101 7.05065 7.15729 7.22047 7.32476 7.38717 7.46074 7.86309 8.20904 8.58828 8.87133 9.03896 10.20287 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.010792 B = 0.004855 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.980048 B = 5765.775794 C = 7703.272037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.007 3.993 3 H 0.115 0.885 4 C 0.215 3.785 5 N -0.444 5.444 6 C 0.060 3.940 7 N -0.515 5.515 8 C 0.014 3.986 9 C 0.124 3.876 10 C 0.371 3.629 11 N -0.534 5.534 12 C 0.168 3.832 13 C -0.126 4.126 14 C -0.086 4.086 15 C -0.170 4.170 16 C -0.040 4.040 17 C -0.214 4.214 18 C 0.497 3.503 19 O -0.511 6.511 20 N -0.371 5.371 21 C -0.383 4.383 22 H 0.119 0.881 23 C 0.109 3.891 24 N -0.822 5.822 25 Si 0.890 3.110 26 H -0.249 1.249 27 H -0.287 1.287 28 H -0.269 1.269 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.042 0.958 34 H 0.100 0.900 35 H 0.063 0.937 36 H 0.016 0.984 37 H 0.111 0.889 38 H 0.065 0.935 39 H 0.130 0.870 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.126 0.874 43 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.464 10.419 8.251 14.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.015 4.015 3 H 0.133 0.867 4 C -0.103 4.103 5 N -0.120 5.120 6 C -0.069 4.069 7 N -0.239 5.239 8 C -0.134 4.134 9 C -0.005 4.005 10 C 0.108 3.892 11 N -0.261 5.261 12 C 0.052 3.948 13 C -0.146 4.146 14 C -0.106 4.106 15 C -0.189 4.189 16 C -0.060 4.060 17 C -0.222 4.222 18 C 0.293 3.707 19 O -0.389 6.389 20 N -0.076 5.076 21 C -0.509 4.509 22 H 0.137 0.863 23 C -0.108 4.108 24 N -0.451 5.451 25 Si 0.717 3.283 26 H -0.174 1.174 27 H -0.214 1.214 28 H -0.194 1.194 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.114 0.886 32 H 0.104 0.896 33 H 0.060 0.940 34 H 0.119 0.881 35 H 0.082 0.918 36 H 0.034 0.966 37 H 0.128 0.872 38 H 0.083 0.917 39 H 0.147 0.853 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.144 0.856 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.352 9.535 9.523 14.162 hybrid contribution 0.066 -0.433 -1.577 1.637 sum -4.286 9.102 7.946 12.820 Atomic orbital electron populations 1.21736 0.91012 1.03187 1.03580 1.18911 0.98178 0.98923 0.85442 0.86731 1.29324 0.92940 0.93490 0.94542 1.81209 1.09355 1.09561 1.11896 1.22075 0.98516 0.97711 0.88636 1.61582 1.58446 1.03732 1.00146 1.22707 0.94982 0.91434 1.04231 1.20796 0.98671 0.96376 0.84706 1.22792 0.90672 0.90222 0.85514 1.68502 1.17961 1.09325 1.30295 1.18878 0.93857 0.94123 0.87897 1.20638 1.00163 0.94518 0.99260 1.21053 0.97970 0.98961 0.92584 1.20899 1.03624 0.97432 0.96974 1.20937 0.93291 0.93464 0.98286 1.20763 1.06997 0.98671 0.95734 1.18646 0.82391 0.84768 0.84860 1.90714 1.59881 1.65056 1.23210 1.42459 1.39765 1.20408 1.04944 1.19235 1.05281 0.89684 1.36722 0.86346 1.25267 0.99636 0.93870 0.91994 1.69639 1.36357 1.11870 1.27187 0.86594 0.82832 0.77371 0.81518 1.17382 1.21401 1.19395 0.92174 0.92750 0.88609 0.89564 0.93995 0.88142 0.91832 0.96583 0.87150 0.91684 0.85254 0.86178 0.86308 0.85637 0.90436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.04 37.16 0.34 -0.78 16 2 C 0.01 0.06 2.69 -93.41 -0.25 -0.19 16 3 H 0.12 0.79 6.26 -51.93 -0.33 0.46 16 4 C 0.22 2.31 14.65 -20.76 -0.30 2.01 16 5 N -0.44 -6.03 18.54 42.15 0.78 -5.25 16 6 C 0.06 0.59 4.30 -3.83 -0.02 0.58 16 7 N -0.52 -6.26 3.88 -244.38 -0.95 -7.21 16 8 C 0.01 0.16 8.97 60.06 0.54 0.70 16 9 C 0.12 1.90 4.12 -4.98 -0.02 1.88 16 10 C 0.37 7.14 7.22 -154.88 -1.12 6.02 16 11 N -0.53 -9.68 7.06 -8.10 -0.06 -9.73 16 12 C 0.17 3.13 6.63 -84.49 -0.56 2.57 16 13 C -0.13 -1.90 10.03 -39.25 -0.39 -2.29 16 14 C -0.09 -1.15 10.00 -39.54 -0.40 -1.55 16 15 C -0.17 -2.48 10.02 -39.51 -0.40 -2.88 16 16 C -0.04 -0.74 9.68 -39.32 -0.38 -1.12 16 17 C -0.21 -4.49 5.89 -104.78 -0.62 -5.11 16 18 C 0.50 12.08 5.85 -12.47 -0.07 12.01 16 19 O -0.51 -13.84 12.75 5.17 0.07 -13.78 16 20 N -0.37 -8.55 2.26 -59.56 -0.13 -8.69 16 21 C -0.38 -9.50 8.54 -14.88 -0.13 -9.62 16 22 H 0.12 2.91 7.37 -52.49 -0.39 2.52 16 23 C 0.11 2.85 4.86 -17.48 -0.08 2.77 16 24 N -0.82 -22.03 13.95 55.50 0.77 -21.25 16 25 Si 0.89 21.84 24.99 -169.99 -4.25 17.59 16 26 H -0.25 -6.48 6.46 56.52 0.36 -6.12 16 27 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 28 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.10 0.87 7.75 -51.93 -0.40 0.47 16 32 H 0.09 0.85 7.93 -51.93 -0.41 0.43 16 33 H 0.04 0.40 8.12 -51.93 -0.42 -0.02 16 34 H 0.10 1.37 5.64 -51.93 -0.29 1.08 16 35 H 0.06 0.56 6.21 -51.93 -0.32 0.24 16 36 H 0.02 0.18 8.14 -51.93 -0.42 -0.25 16 37 H 0.11 1.70 7.83 -51.93 -0.41 1.29 16 38 H 0.07 0.99 7.61 -51.93 -0.40 0.59 16 39 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 40 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 41 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 42 H 0.13 2.28 7.83 -52.48 -0.41 1.87 16 43 H 0.29 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 356.04 15.07 5.37 5.37 Total: -1.00 -30.32 356.04 -7.75 -38.07 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -5.48 Total: -0.12 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: -3.86 Total: 4.99 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: 0.42 Total: -52.12 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: 0.07 Total: -13.78 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.25 Total: 17.59 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.32 -7.75 -38.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728915682.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.661 kcal (2) G-P(sol) polarization free energy of solvation -30.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds