Wall clock time and date at job start Tue Mar 31 2020 15:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46681 * 2 1 4 4 C 1.53003 * 109.47471 * 119.99355 * 2 1 3 5 5 C 1.47193 * 109.47280 * 182.61848 * 4 2 1 6 6 N 3.43557 * 155.07895 * 115.54473 * 2 1 3 7 7 N 1.46897 * 109.47487 * 240.00083 * 2 1 3 8 8 C 1.46897 * 111.00509 * 72.66281 * 7 2 1 9 9 C 1.46903 * 110.99422 * 308.71239 * 7 2 1 10 10 C 1.50705 * 109.46792 * 189.99879 * 9 7 2 11 11 N 1.29821 * 118.35342 * 0.02562 * 10 9 7 12 12 C 1.35633 * 121.62916 * 179.97438 * 11 10 9 13 13 C 1.39630 * 121.61355 * 180.02562 * 12 11 10 14 14 C 1.37710 * 119.68940 * 179.97438 * 13 12 11 15 15 C 1.38874 * 120.82788 * 0.04544 * 14 13 12 16 16 C 1.37798 * 120.56849 * 359.94918 * 15 14 13 17 17 C 1.39361 * 119.52171 * 0.02764 * 16 15 14 18 18 C 1.46968 * 121.91705 * 180.02562 * 17 16 15 19 19 O 1.21721 * 121.28250 * 359.95704 * 18 17 16 20 20 N 1.35337 * 117.42436 * 179.97438 * 18 17 16 21 21 C 1.37109 * 119.71250 * 180.02562 * 20 18 17 22 22 H 1.08003 * 119.99842 * 137.21588 * 21 20 18 23 23 C 1.39073 * 119.99856 * 317.21061 * 21 20 18 24 24 N 1.31257 * 120.00452 * 340.61162 * 23 21 20 25 25 Si 1.86800 * 119.99678 * 160.60623 * 23 21 20 26 26 H 1.48506 * 109.47154 * 60.00536 * 25 23 21 27 27 H 1.48498 * 109.47131 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47626 * 300.00545 * 25 23 21 29 29 H 1.08996 * 109.47450 * 60.00489 * 1 2 3 30 30 H 1.09003 * 109.46708 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47287 * 300.00306 * 1 2 3 32 32 H 1.09000 * 109.46762 * 302.62076 * 4 2 1 33 33 H 1.08999 * 109.46457 * 62.61793 * 4 2 1 34 34 H 1.09004 * 109.47214 * 289.55581 * 8 7 2 35 35 H 1.09006 * 109.46449 * 49.54797 * 8 7 2 36 36 H 1.08995 * 109.47463 * 169.54779 * 8 7 2 37 37 H 1.08998 * 109.47049 * 70.00267 * 9 7 2 38 38 H 1.09000 * 109.47343 * 309.99832 * 9 7 2 39 39 H 1.07995 * 120.15809 * 359.97000 * 13 12 11 40 40 H 1.08001 * 119.58739 * 179.97438 * 14 13 12 41 41 H 1.08003 * 119.71783 * 179.97438 * 15 14 13 42 42 H 1.08000 * 120.23399 * 180.02562 * 16 15 14 43 43 H 0.96998 * 119.99720 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 1.2493 5 6 3.5107 -0.6664 1.2814 6 7 4.6457 -0.6242 1.3061 7 7 2.0197 -0.6924 -1.1994 8 6 1.8100 0.1249 -2.4018 9 6 1.3865 -2.0103 -1.3417 10 6 2.0827 -2.7872 -2.4294 11 7 3.0767 -2.2264 -3.0481 12 6 3.7506 -2.8650 -4.0368 13 6 4.8200 -2.2617 -4.7017 14 6 5.4767 -2.9468 -5.6995 15 6 5.0885 -4.2319 -6.0548 16 6 4.0363 -4.8487 -5.4134 17 6 3.3584 -4.1731 -4.4004 18 6 2.2298 -4.7807 -3.6814 19 8 1.8425 -5.9038 -3.9466 20 7 1.6377 -4.0432 -2.7134 21 6 0.5808 -4.5644 -2.0127 22 1 0.5234 -4.4298 -0.9426 23 6 -0.4173 -5.2665 -2.6798 24 7 -0.5702 -5.1186 -3.9750 25 14 -1.5404 -6.4200 -1.7324 26 1 -2.2741 -5.6538 -0.6932 27 1 -2.5119 -7.0431 -2.6668 28 1 -0.7279 -7.4805 -1.0842 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6389 -0.2350 2.1386 33 1 1.7156 -1.7614 1.2262 34 1 0.7449 0.1703 -2.6291 35 1 2.1873 1.1325 -2.2265 36 1 2.3422 -0.3213 -3.2419 37 1 0.3359 -1.8824 -1.6022 38 1 1.4639 -2.5542 -0.4003 39 1 5.1305 -1.2624 -4.4347 40 1 6.3034 -2.4784 -6.2129 41 1 5.6160 -4.7527 -6.8403 42 1 3.7392 -5.8484 -5.6938 43 1 -1.2661 -5.6086 -4.4402 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759374965.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:55 Heat of formation + Delta-G solvation = 63.654057 kcal Electronic energy + Delta-G solvation = -28249.644387 eV Core-core repulsion = 24488.748571 eV Total energy + Delta-G solvation = -3760.895816 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.53589 -38.69835 -37.55288 -36.37177 -35.72292 -33.79967 -32.11628 -31.90918 -30.36686 -29.40772 -28.00998 -27.31223 -25.80964 -24.55774 -23.02014 -22.17553 -21.03895 -19.67702 -18.77073 -17.88022 -17.46587 -16.93266 -16.06969 -15.40998 -15.15544 -14.99023 -14.66785 -14.25129 -14.19213 -13.82396 -13.73934 -13.58676 -13.40785 -13.19067 -12.99727 -12.46807 -12.28768 -12.26169 -11.97441 -11.90435 -11.87622 -11.63997 -11.55415 -11.31829 -11.16674 -11.11509 -11.03040 -10.91509 -10.64955 -10.64059 -10.44955 -9.53693 -8.91856 -8.74345 -8.39151 -8.35372 -7.94869 -7.03957 -6.70509 -4.56376 1.51316 1.67965 3.00381 3.05053 3.09897 3.10596 3.12380 3.24152 3.69003 3.89381 3.99834 4.21146 4.45943 4.67274 4.83050 4.87573 5.08089 5.12931 5.24063 5.36714 5.39356 5.45042 5.49745 5.56709 5.63014 5.75583 5.78456 5.85313 5.91459 5.94015 6.00906 6.09846 6.18438 6.23616 6.44274 6.61550 6.74056 6.82202 7.02274 7.06850 7.14513 7.26239 7.38806 7.51573 7.61089 7.89033 8.10817 8.45632 8.71018 9.18672 9.50328 10.31008 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.008334 B = 0.006513 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3358.746565 B = 4298.374594 C = 6755.609987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.083 3.917 3 H 0.090 0.910 4 C -0.023 4.023 5 C 0.222 3.778 6 N -0.443 5.443 7 N -0.516 5.516 8 C 0.024 3.976 9 C 0.118 3.882 10 C 0.365 3.635 11 N -0.544 5.544 12 C 0.168 3.832 13 C -0.130 4.130 14 C -0.090 4.090 15 C -0.176 4.176 16 C -0.039 4.039 17 C -0.210 4.210 18 C 0.522 3.478 19 O -0.505 6.505 20 N -0.352 5.352 21 C -0.387 4.387 22 H 0.106 0.894 23 C 0.081 3.919 24 N -0.803 5.803 25 Si 0.927 3.073 26 H -0.268 1.268 27 H -0.280 1.280 28 H -0.266 1.266 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.018 0.982 35 H 0.055 0.945 36 H 0.100 0.900 37 H 0.075 0.925 38 H 0.095 0.905 39 H 0.124 0.876 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.122 0.878 43 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.321 9.234 5.123 10.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.027 4.027 3 H 0.108 0.892 4 C -0.063 4.063 5 C -0.096 4.096 6 N -0.120 5.120 7 N -0.239 5.239 8 C -0.123 4.123 9 C -0.011 4.011 10 C 0.102 3.898 11 N -0.272 5.272 12 C 0.052 3.948 13 C -0.150 4.150 14 C -0.110 4.110 15 C -0.195 4.195 16 C -0.058 4.058 17 C -0.218 4.218 18 C 0.316 3.684 19 O -0.379 6.379 20 N -0.056 5.056 21 C -0.514 4.514 22 H 0.123 0.877 23 C -0.136 4.136 24 N -0.430 5.430 25 Si 0.751 3.249 26 H -0.193 1.193 27 H -0.205 1.205 28 H -0.191 1.191 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.128 0.872 33 H 0.126 0.874 34 H 0.037 0.963 35 H 0.074 0.926 36 H 0.118 0.882 37 H 0.093 0.907 38 H 0.113 0.887 39 H 0.142 0.858 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.140 0.860 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.804 9.124 4.958 10.540 hybrid contribution -2.098 -1.372 -0.207 2.515 sum -0.294 7.752 4.751 9.097 Atomic orbital electron populations 1.22504 0.96201 1.03439 1.02697 1.21730 0.93296 0.98206 0.89509 0.89180 1.19447 0.82657 1.04434 0.99804 1.28776 0.94966 0.93304 0.92582 1.81159 1.13058 1.08628 1.09130 1.61935 1.57165 1.02288 1.02557 1.22564 0.99016 0.96674 0.94077 1.20862 0.95804 0.88638 0.95789 1.22709 0.91126 0.82046 0.93936 1.68465 1.11996 1.33449 1.13288 1.18857 0.94068 0.89803 0.92108 1.20600 0.96375 1.00317 0.97729 1.20974 0.98792 0.94591 0.96624 1.20834 0.99734 0.96218 1.02730 1.20878 0.93219 0.99009 0.92741 1.20869 1.01374 0.96969 1.02559 1.18217 0.82496 0.85723 0.81923 1.90660 1.64072 1.18478 1.64643 1.42212 1.25008 1.09975 1.28430 1.19483 1.00146 1.39252 0.92503 0.87665 1.25397 0.96675 0.96165 0.95323 1.69787 1.29352 1.34832 1.09061 0.86026 0.78960 0.80590 0.79308 1.19282 1.20482 1.19112 0.91800 0.91175 0.91809 0.87162 0.87382 0.96300 0.92574 0.88169 0.90746 0.88717 0.85771 0.86556 0.86664 0.85958 0.90914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.59 8.41 37.16 0.31 -1.28 16 2 C 0.08 0.81 2.29 -67.71 -0.16 0.66 16 3 H 0.09 0.82 7.87 -51.93 -0.41 0.41 16 4 C -0.02 -0.20 5.13 -29.52 -0.15 -0.35 16 5 C 0.22 2.93 15.09 -20.76 -0.31 2.62 16 6 N -0.44 -7.39 18.54 42.16 0.78 -6.61 16 7 N -0.52 -7.22 3.99 -236.32 -0.94 -8.16 16 8 C 0.02 0.34 8.79 60.06 0.53 0.87 16 9 C 0.12 1.92 2.96 -4.97 -0.01 1.90 16 10 C 0.37 7.77 7.26 -154.87 -1.12 6.65 16 11 N -0.54 -11.51 7.05 -8.10 -0.06 -11.57 16 12 C 0.17 3.64 6.63 -84.50 -0.56 3.08 16 13 C -0.13 -2.40 10.03 -39.26 -0.39 -2.79 16 14 C -0.09 -1.47 10.00 -39.54 -0.40 -1.87 16 15 C -0.18 -3.03 10.02 -39.51 -0.40 -3.42 16 16 C -0.04 -0.81 9.68 -39.32 -0.38 -1.19 16 17 C -0.21 -4.96 5.89 -104.77 -0.62 -5.57 16 18 C 0.52 13.89 6.93 -12.47 -0.09 13.80 16 19 O -0.50 -14.73 14.43 5.17 0.07 -14.66 16 20 N -0.35 -8.68 2.67 -59.56 -0.16 -8.84 16 21 C -0.39 -9.37 8.17 -14.88 -0.12 -9.49 16 22 H 0.11 2.25 7.13 -52.48 -0.37 1.88 16 23 C 0.08 2.03 4.37 -17.49 -0.08 1.95 16 24 N -0.80 -21.68 11.69 55.50 0.65 -21.03 16 25 Si 0.93 19.05 29.59 -169.99 -5.03 14.02 16 26 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 27 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 28 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 29 H 0.06 0.59 7.03 -51.93 -0.36 0.22 16 30 H 0.07 0.65 6.54 -51.93 -0.34 0.31 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.11 0.91 6.36 -51.93 -0.33 0.58 16 34 H 0.02 0.25 7.09 -51.93 -0.37 -0.12 16 35 H 0.06 0.68 7.89 -51.93 -0.41 0.27 16 36 H 0.10 1.71 5.76 -51.93 -0.30 1.41 16 37 H 0.07 1.21 6.66 -51.93 -0.35 0.87 16 38 H 0.09 1.40 5.64 -51.93 -0.29 1.11 16 39 H 0.12 2.06 8.06 -52.49 -0.42 1.64 16 40 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 41 H 0.12 1.62 8.06 -52.48 -0.42 1.20 16 42 H 0.12 2.52 7.83 -52.49 -0.41 2.11 16 43 H 0.28 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 355.50 15.07 5.36 5.36 Total: -1.00 -32.81 355.50 -8.47 -41.28 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -5.19 Total: 4.65 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: -3.95 Total: 5.56 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: 0.27 Total: -56.21 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: 0.07 Total: -14.66 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.81 -8.47 -41.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759374965.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.931 kcal (2) G-P(sol) polarization free energy of solvation -32.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds