Wall clock time and date at job start Tue Mar 31 2020 15:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46681 * 2 1 4 4 C 1.53003 * 109.47471 * 119.99355 * 2 1 3 5 5 C 1.47193 * 109.47280 * 182.61848 * 4 2 1 6 6 N 3.43557 * 155.07895 * 115.54473 * 2 1 3 7 7 N 1.46897 * 109.47487 * 240.00083 * 2 1 3 8 8 C 1.46897 * 111.00509 * 72.66281 * 7 2 1 9 9 C 1.46903 * 110.99422 * 308.71239 * 7 2 1 10 10 C 1.50705 * 109.46792 * 189.99879 * 9 7 2 11 11 N 1.29821 * 118.35342 * 0.02562 * 10 9 7 12 12 C 1.35633 * 121.62916 * 179.97438 * 11 10 9 13 13 C 1.39630 * 121.61355 * 180.02562 * 12 11 10 14 14 C 1.37710 * 119.68940 * 179.97438 * 13 12 11 15 15 C 1.38874 * 120.82788 * 0.04544 * 14 13 12 16 16 C 1.37798 * 120.56849 * 359.94918 * 15 14 13 17 17 C 1.39361 * 119.52171 * 0.02764 * 16 15 14 18 18 C 1.46968 * 121.91705 * 180.02562 * 17 16 15 19 19 O 1.21721 * 121.28250 * 359.95704 * 18 17 16 20 20 N 1.35337 * 117.42436 * 179.97438 * 18 17 16 21 21 C 1.37109 * 119.71250 * 180.02562 * 20 18 17 22 22 H 1.08003 * 119.99842 * 137.21588 * 21 20 18 23 23 C 1.39073 * 119.99856 * 317.21061 * 21 20 18 24 24 N 1.31257 * 120.00452 * 340.61162 * 23 21 20 25 25 Si 1.86800 * 119.99678 * 160.60623 * 23 21 20 26 26 H 1.48506 * 109.47154 * 60.00536 * 25 23 21 27 27 H 1.48498 * 109.47131 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47626 * 300.00545 * 25 23 21 29 29 H 1.08996 * 109.47450 * 60.00489 * 1 2 3 30 30 H 1.09003 * 109.46708 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47287 * 300.00306 * 1 2 3 32 32 H 1.09000 * 109.46762 * 302.62076 * 4 2 1 33 33 H 1.08999 * 109.46457 * 62.61793 * 4 2 1 34 34 H 1.09004 * 109.47214 * 289.55581 * 8 7 2 35 35 H 1.09006 * 109.46449 * 49.54797 * 8 7 2 36 36 H 1.08995 * 109.47463 * 169.54779 * 8 7 2 37 37 H 1.08998 * 109.47049 * 70.00267 * 9 7 2 38 38 H 1.09000 * 109.47343 * 309.99832 * 9 7 2 39 39 H 1.07995 * 120.15809 * 359.97000 * 13 12 11 40 40 H 1.08001 * 119.58739 * 179.97438 * 14 13 12 41 41 H 1.08003 * 119.71783 * 179.97438 * 15 14 13 42 42 H 1.08000 * 120.23399 * 180.02562 * 16 15 14 43 43 H 0.96998 * 119.99720 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 1.2493 5 6 3.5107 -0.6664 1.2814 6 7 4.6457 -0.6242 1.3061 7 7 2.0197 -0.6924 -1.1994 8 6 1.8100 0.1249 -2.4018 9 6 1.3865 -2.0103 -1.3417 10 6 2.0827 -2.7872 -2.4294 11 7 3.0767 -2.2264 -3.0481 12 6 3.7506 -2.8650 -4.0368 13 6 4.8200 -2.2617 -4.7017 14 6 5.4767 -2.9468 -5.6995 15 6 5.0885 -4.2319 -6.0548 16 6 4.0363 -4.8487 -5.4134 17 6 3.3584 -4.1731 -4.4004 18 6 2.2298 -4.7807 -3.6814 19 8 1.8425 -5.9038 -3.9466 20 7 1.6377 -4.0432 -2.7134 21 6 0.5808 -4.5644 -2.0127 22 1 0.5234 -4.4298 -0.9426 23 6 -0.4173 -5.2665 -2.6798 24 7 -0.5702 -5.1186 -3.9750 25 14 -1.5404 -6.4200 -1.7324 26 1 -2.2741 -5.6538 -0.6932 27 1 -2.5119 -7.0431 -2.6668 28 1 -0.7279 -7.4805 -1.0842 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6389 -0.2350 2.1386 33 1 1.7156 -1.7614 1.2262 34 1 0.7449 0.1703 -2.6291 35 1 2.1873 1.1325 -2.2265 36 1 2.3422 -0.3213 -3.2419 37 1 0.3359 -1.8824 -1.6022 38 1 1.4639 -2.5542 -0.4003 39 1 5.1305 -1.2624 -4.4347 40 1 6.3034 -2.4784 -6.2129 41 1 5.6160 -4.7527 -6.8403 42 1 3.7392 -5.8484 -5.6938 43 1 -1.2661 -5.6086 -4.4402 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759374965.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:54 Heat of formation + Delta-G solvation = 43.239023 kcal Electronic energy + Delta-G solvation = -28250.529650 eV Core-core repulsion = 24488.748571 eV Total energy + Delta-G solvation = -3761.781079 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.21779 -39.79396 -39.17368 -37.93908 -36.98026 -35.53337 -33.69085 -33.14547 -31.94710 -30.84654 -28.87872 -28.57183 -27.60148 -25.72011 -24.69246 -23.55209 -22.63071 -20.77023 -20.48979 -19.50122 -18.69229 -18.20906 -17.55284 -16.79031 -16.77290 -16.41148 -16.00557 -15.64182 -15.60916 -15.37871 -15.20179 -14.69644 -14.62039 -14.55372 -14.13610 -13.99733 -13.68474 -13.63986 -13.50694 -13.23467 -13.01780 -12.88401 -12.72420 -12.63800 -12.52090 -12.48258 -12.39125 -12.21703 -11.96149 -11.81715 -11.48501 -11.25616 -10.77642 -10.41393 -10.20751 -9.92700 -9.03465 -8.76309 -8.49901 -6.45077 -0.07925 0.08104 1.36526 1.46657 1.51358 1.56113 2.02941 2.05223 2.11721 2.27378 2.48924 2.91722 3.14453 3.32875 3.38444 3.41249 3.81492 3.93169 4.08532 4.16667 4.22731 4.34523 4.44776 4.49806 4.53538 4.57965 4.63132 4.78811 4.84252 4.87875 4.92768 5.01324 5.10878 5.16419 5.21250 5.23471 5.36310 5.42965 5.53305 5.55321 5.60582 5.82091 5.99141 6.15595 6.27663 6.42030 6.66176 6.89554 6.91312 7.45542 7.66268 8.49924 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.008334 B = 0.006513 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3358.746565 B = 4298.374594 C = 6755.609987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.084 3.916 3 H 0.104 0.896 4 C -0.022 4.022 5 C 0.245 3.755 6 N -0.513 5.513 7 N -0.529 5.529 8 C 0.030 3.970 9 C 0.129 3.871 10 C 0.353 3.647 11 N -0.533 5.533 12 C 0.138 3.862 13 C -0.129 4.129 14 C -0.073 4.073 15 C -0.152 4.152 16 C -0.067 4.067 17 C -0.242 4.242 18 C 0.496 3.504 19 O -0.556 6.556 20 N -0.370 5.370 21 C -0.401 4.401 22 H 0.129 0.871 23 C 0.033 3.967 24 N -0.854 5.854 25 Si 0.989 3.011 26 H -0.230 1.230 27 H -0.287 1.287 28 H -0.277 1.277 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.161 0.839 33 H 0.116 0.884 34 H 0.020 0.980 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.111 0.889 39 H 0.146 0.854 40 H 0.169 0.831 41 H 0.157 0.843 42 H 0.110 0.890 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.219 11.555 6.437 13.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.025 4.025 3 H 0.122 0.878 4 C -0.062 4.062 5 C -0.072 4.072 6 N -0.191 5.191 7 N -0.253 5.253 8 C -0.118 4.118 9 C -0.001 4.001 10 C 0.089 3.911 11 N -0.259 5.259 12 C 0.023 3.977 13 C -0.149 4.149 14 C -0.092 4.092 15 C -0.171 4.171 16 C -0.087 4.087 17 C -0.249 4.249 18 C 0.292 3.708 19 O -0.435 6.435 20 N -0.074 5.074 21 C -0.527 4.527 22 H 0.146 0.854 23 C -0.178 4.178 24 N -0.484 5.484 25 Si 0.810 3.190 26 H -0.153 1.153 27 H -0.213 1.213 28 H -0.203 1.203 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.114 0.886 32 H 0.178 0.822 33 H 0.134 0.866 34 H 0.039 0.961 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.129 0.871 39 H 0.163 0.837 40 H 0.187 0.813 41 H 0.174 0.826 42 H 0.128 0.872 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.372 11.527 6.303 13.351 hybrid contribution -2.042 -1.930 -0.726 2.902 sum 0.330 9.597 5.577 11.105 Atomic orbital electron populations 1.22430 0.94577 1.03271 1.03840 1.21864 0.94482 0.98439 0.87728 0.87784 1.19828 0.79670 1.05444 1.01260 1.29626 0.95800 0.91229 0.90500 1.81180 1.15373 1.11039 1.11545 1.61907 1.57764 1.01674 1.03978 1.22422 0.98734 0.97323 0.93309 1.20855 0.95024 0.89596 0.94578 1.23696 0.90975 0.81701 0.94719 1.68598 1.11483 1.33056 1.12772 1.19342 0.95588 0.89596 0.93199 1.20983 0.95098 1.01232 0.97553 1.21549 0.98885 0.93719 0.95080 1.21327 0.97478 0.96443 1.01833 1.21013 0.95074 0.99082 0.93495 1.21045 1.01538 0.98331 1.03979 1.18857 0.83346 0.85711 0.82887 1.90583 1.65908 1.20405 1.66596 1.42341 1.25345 1.11124 1.28619 1.20002 0.99743 1.39406 0.93572 0.85367 1.26400 0.98205 0.97283 0.95893 1.69921 1.30707 1.36683 1.11122 0.85096 0.76967 0.78381 0.78530 1.15257 1.21301 1.20264 0.92725 0.91995 0.88626 0.82204 0.86639 0.96103 0.90456 0.91531 0.90882 0.87096 0.83652 0.81339 0.82563 0.87222 0.91610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.41 8.41 71.98 0.61 -1.80 16 2 C 0.08 1.37 2.29 44.92 0.10 1.47 16 3 H 0.10 1.47 7.87 -2.38 -0.02 1.45 16 4 C -0.02 -0.30 5.13 28.79 0.15 -0.16 16 5 C 0.24 5.97 15.09 89.44 1.35 7.32 16 6 N -0.51 -16.76 18.54 20.00 0.37 -16.39 16 7 N -0.53 -13.94 3.99 -901.59 -3.60 -17.54 16 8 C 0.03 0.82 8.79 127.69 1.12 1.94 16 9 C 0.13 4.09 2.96 85.56 0.25 4.35 16 10 C 0.35 15.37 7.26 137.94 1.00 16.37 16 11 N -0.53 -22.88 7.05 -179.53 -1.27 -24.15 16 12 C 0.14 6.05 6.63 39.65 0.26 6.31 16 13 C -0.13 -4.49 10.03 22.48 0.23 -4.27 16 14 C -0.07 -2.10 10.00 22.30 0.22 -1.88 16 15 C -0.15 -4.86 10.02 22.32 0.22 -4.63 16 16 C -0.07 -2.86 9.68 22.44 0.22 -2.64 16 17 C -0.24 -11.93 5.89 -19.96 -0.12 -12.04 16 18 C 0.50 28.10 6.93 86.44 0.60 28.70 16 19 O -0.56 -35.02 14.43 -4.42 -0.06 -35.08 16 20 N -0.37 -19.04 2.67 -460.23 -1.23 -20.27 16 21 C -0.40 -20.01 8.17 84.07 0.69 -19.32 16 22 H 0.13 5.49 7.13 -2.91 -0.02 5.47 16 23 C 0.03 1.72 4.37 84.98 0.37 2.10 16 24 N -0.85 -49.01 11.69 21.68 0.25 -48.76 16 25 Si 0.99 39.92 29.59 68.60 2.03 41.95 16 26 H -0.23 -7.79 7.11 99.48 0.71 -7.08 16 27 H -0.29 -11.79 7.11 99.48 0.71 -11.08 16 28 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 29 H 0.05 0.85 7.03 -2.39 -0.02 0.83 16 30 H 0.06 0.95 6.54 -2.39 -0.02 0.93 16 31 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.16 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.12 1.53 6.36 -2.39 -0.02 1.51 16 34 H 0.02 0.54 7.09 -2.38 -0.02 0.53 16 35 H 0.08 1.72 7.89 -2.38 -0.02 1.70 16 36 H 0.07 2.27 5.76 -2.39 -0.01 2.25 16 37 H 0.07 2.35 6.66 -2.39 -0.02 2.34 16 38 H 0.11 3.13 5.64 -2.39 -0.01 3.11 16 39 H 0.15 4.41 8.06 -2.91 -0.02 4.38 16 40 H 0.17 3.21 8.06 -2.91 -0.02 3.18 16 41 H 0.16 3.72 8.06 -2.91 -0.02 3.69 16 42 H 0.11 4.83 7.83 -2.91 -0.02 4.81 16 43 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -80.41 355.50 4.83 -75.59 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 1.05 Total: 22.84 kcal Atomic # 6 Polarization: 14.53 SS G_CDS: 7.27 Total: 21.81 kcal Atomic # 7 Polarization: -121.63 SS G_CDS: -5.47 Total: -127.10 kcal Atomic # 8 Polarization: -35.02 SS G_CDS: -0.06 Total: -35.08 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.95 kcal Total: -80.41 4.83 -75.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759374965.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.824 kcal (2) G-P(sol) polarization free energy of solvation -80.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds