Wall clock time and date at job start Tue Mar 31 2020 15:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47464 * 2 1 4 4 C 1.50697 * 109.47234 * 239.99606 * 2 1 3 5 5 N 1.28008 * 119.99844 * 120.00098 * 4 2 1 6 6 N 1.40099 * 120.00341 * 180.02562 * 5 4 2 7 7 C 1.34776 * 120.00696 * 180.02562 * 6 5 4 8 8 O 1.21630 * 119.99480 * 0.02562 * 7 6 5 9 9 C 1.47379 * 120.00555 * 179.97438 * 7 6 5 10 10 C 1.41345 * 126.41144 * 0.03024 * 9 7 6 11 11 N 1.30474 * 108.07106 * 179.97438 * 10 9 7 12 12 N 1.39931 * 108.91788 * 0.02562 * 11 10 9 13 13 C 1.40155 * 125.76785 * 180.02562 * 12 11 10 14 14 C 1.38844 * 120.06781 * 179.70224 * 13 12 11 15 15 C 1.38119 * 119.93164 * 179.69891 * 14 13 12 16 16 C 1.38279 * 120.06627 * 0.56908 * 15 14 13 17 17 C 1.38282 * 120.13686 * 359.72748 * 16 15 14 18 18 C 1.38117 * 120.06482 * 359.97284 * 17 16 15 19 19 C 1.34550 * 108.46044 * 359.97438 * 12 11 10 20 20 C 1.53005 * 109.46996 * 119.99961 * 2 1 3 21 21 C 1.50702 * 109.47008 * 295.00189 * 20 2 1 22 22 H 1.08003 * 120.00283 * 359.97438 * 21 20 2 23 23 C 1.37871 * 119.99970 * 180.02562 * 21 20 2 24 24 N 1.31525 * 120.00330 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 120.00205 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47103 * 59.99645 * 25 23 21 27 27 H 1.48498 * 109.47302 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.46924 * 299.99782 * 25 23 21 29 29 H 1.09001 * 109.47397 * 300.00076 * 1 2 3 30 30 H 1.09000 * 109.47299 * 60.00146 * 1 2 3 31 31 H 1.09005 * 109.47477 * 180.02562 * 1 2 3 32 32 H 1.07998 * 120.00118 * 300.00262 * 4 2 1 33 33 H 0.97002 * 120.00126 * 359.97438 * 6 5 4 34 34 H 1.08009 * 125.96195 * 0.23495 * 10 9 7 35 35 H 1.08005 * 120.03178 * 359.97438 * 14 13 12 36 36 H 1.08004 * 119.96501 * 180.29392 * 15 14 13 37 37 H 1.08006 * 119.92959 * 179.74776 * 16 15 14 38 38 H 1.07999 * 119.96641 * 180.02562 * 17 16 15 39 39 H 1.08003 * 120.03285 * 180.02562 * 18 17 16 40 40 H 1.08006 * 126.31159 * 179.97438 * 19 12 11 41 41 H 1.09001 * 109.47187 * 55.00005 * 20 2 1 42 42 H 1.09000 * 109.47317 * 174.99690 * 20 2 1 43 43 H 0.96992 * 120.00042 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 7 2.7683 -0.0884 -2.0730 6 7 3.2349 -0.7486 -3.2172 7 6 4.0102 -0.0939 -4.1041 8 8 4.3052 1.0702 -3.9109 9 6 4.5015 -0.7887 -5.3074 10 6 4.2441 -2.1318 -5.6646 11 7 4.8504 -2.3734 -6.7944 12 7 5.5160 -1.2145 -7.2090 13 6 6.2785 -1.0813 -8.3775 14 6 6.8853 0.1309 -8.6777 15 6 7.6412 0.2572 -9.8268 16 6 7.7842 -0.8186 -10.6837 17 6 7.1760 -2.0254 -10.3906 18 6 6.4239 -2.1597 -9.2399 19 6 5.2993 -0.2493 -6.2970 20 6 2.0399 -0.7213 1.2493 21 6 1.6412 0.0570 2.4766 22 1 1.0805 0.9746 2.3757 23 6 1.9930 -0.4017 3.7283 24 7 2.6763 -1.5188 3.8513 25 14 1.4994 0.5635 5.2496 26 1 0.0195 0.6701 5.3096 27 1 1.9943 -0.1366 6.4622 28 1 2.0916 1.9238 5.1866 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.7714 -1.7444 -1.4013 33 1 3.0006 -1.6773 -3.3707 34 1 3.6461 -2.8341 -5.1027 35 1 6.7700 0.9728 -8.0112 36 1 8.1174 1.1985 -10.0585 37 1 8.3725 -0.7161 -11.5837 38 1 7.2899 -2.8639 -11.0616 39 1 5.9495 -3.1026 -9.0112 40 1 5.6798 0.7609 -6.3320 41 1 1.6053 -1.7198 1.2952 42 1 3.1262 -0.7996 1.2057 43 1 2.9241 -1.8412 4.7318 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766021513.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:20 Heat of formation + Delta-G solvation = 103.554107 kcal Electronic energy + Delta-G solvation = -24865.190962 eV Core-core repulsion = 21106.025342 eV Total energy + Delta-G solvation = -3759.165620 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.12275 -39.65540 -38.94180 -36.88238 -34.74451 -34.13663 -32.42914 -31.82492 -31.08609 -30.46554 -29.32853 -26.96474 -24.93980 -23.89785 -23.76714 -22.53259 -21.56516 -21.03080 -20.25964 -19.37202 -18.66426 -17.44226 -16.90230 -16.18903 -16.12031 -15.96487 -15.82676 -15.17313 -14.72666 -14.51869 -14.48348 -14.25074 -14.10589 -13.42424 -13.28351 -13.18217 -13.10833 -12.72642 -12.23619 -11.94405 -11.89508 -11.55335 -11.39362 -11.13120 -10.90027 -10.89226 -10.76808 -10.42691 -10.09933 -9.93847 -9.67081 -9.61682 -9.59687 -9.49331 -9.08429 -8.67019 -8.42254 -8.34915 -6.00334 -4.02234 0.22238 0.74053 1.44142 1.72268 1.79225 2.48272 2.74156 3.20563 3.35403 3.39840 3.42532 3.49947 3.86673 4.17071 4.32495 4.34885 4.46860 4.54336 4.66841 4.73857 4.78170 4.98214 5.10025 5.20564 5.21825 5.35826 5.38486 5.40486 5.63813 5.74998 5.88628 5.96262 6.00102 6.09064 6.12414 6.18109 6.48789 6.57094 6.81591 6.97242 6.98479 7.02108 7.30278 7.62624 7.69728 7.85001 7.97733 8.38353 8.66130 9.02797 9.61507 11.11044 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.032926 B = 0.001664 C = 0.001656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.185459 B =16823.918141 C =16908.062002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.042 4.042 3 H 0.080 0.920 4 C 0.108 3.892 5 N -0.254 5.254 6 N -0.587 5.587 7 C 0.612 3.388 8 O -0.516 6.516 9 C -0.274 4.274 10 C 0.091 3.909 11 N -0.288 5.288 12 N -0.312 5.312 13 C 0.152 3.848 14 C -0.137 4.137 15 C -0.092 4.092 16 C -0.126 4.126 17 C -0.097 4.097 18 C -0.114 4.114 19 C 0.131 3.869 20 C 0.034 3.966 21 C -0.516 4.516 22 H 0.059 0.941 23 C 0.057 3.943 24 N -0.896 5.896 25 Si 0.893 3.107 26 H -0.277 1.277 27 H -0.288 1.288 28 H -0.276 1.276 29 H 0.073 0.927 30 H 0.035 0.965 31 H 0.049 0.951 32 H 0.102 0.898 33 H 0.377 0.623 34 H 0.197 0.803 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.130 0.870 38 H 0.133 0.867 39 H 0.140 0.860 40 H 0.195 0.805 41 H 0.021 0.979 42 H 0.019 0.981 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.160 -2.536 -30.104 31.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.063 4.063 3 H 0.099 0.901 4 C -0.107 4.107 5 N -0.056 5.056 6 N -0.327 5.327 7 C 0.399 3.601 8 O -0.390 6.390 9 C -0.290 4.290 10 C -0.097 4.097 11 N -0.105 5.105 12 N -0.084 5.084 13 C 0.061 3.939 14 C -0.158 4.158 15 C -0.111 4.111 16 C -0.145 4.145 17 C -0.116 4.116 18 C -0.134 4.134 19 C -0.016 4.016 20 C -0.005 4.005 21 C -0.555 4.555 22 H 0.077 0.923 23 C -0.144 4.144 24 N -0.535 5.535 25 Si 0.721 3.279 26 H -0.202 1.202 27 H -0.214 1.214 28 H -0.202 1.202 29 H 0.092 0.908 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.119 0.881 33 H 0.215 0.785 34 H 0.214 0.786 35 H 0.152 0.848 36 H 0.153 0.847 37 H 0.148 0.852 38 H 0.151 0.849 39 H 0.158 0.842 40 H 0.211 0.789 41 H 0.039 0.961 42 H 0.037 0.963 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.236 -1.885 -31.155 32.280 hybrid contribution -0.801 -0.457 1.574 1.824 sum 7.435 -2.342 -29.581 30.590 Atomic orbital electron populations 1.21671 0.94338 1.01418 1.01159 1.20392 0.95480 1.00203 0.90216 0.90143 1.26755 0.91769 0.97836 0.94309 1.74592 1.12078 1.24106 0.94783 1.46790 1.51562 1.13421 1.20924 1.16761 0.77262 0.85648 0.80462 1.90798 1.56445 1.16030 1.75703 1.20219 1.12318 0.95782 1.00635 1.24275 0.97096 0.95184 0.93195 1.77238 1.13219 1.04924 1.15154 1.45657 1.37361 1.08835 1.16557 1.17608 0.95097 0.95860 0.85367 1.20942 0.99614 0.95771 0.99438 1.21025 0.97426 0.99447 0.93211 1.21307 1.00053 0.93076 1.00016 1.21117 0.96181 0.98093 0.96181 1.20953 1.00107 0.98351 0.93991 1.23000 0.95292 0.95536 0.87779 1.19124 0.96537 0.95537 0.89261 1.21134 1.35196 1.08467 0.90657 0.92260 1.25002 0.95165 0.95073 0.99135 1.69951 1.38716 1.21177 1.23647 0.86644 0.78866 0.80153 0.82268 1.20211 1.21406 1.20203 0.90759 0.94569 0.93141 0.88103 0.78517 0.78590 0.84804 0.84692 0.85218 0.84873 0.84244 0.78858 0.96062 0.96290 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.98 37.15 0.33 -1.87 16 2 C -0.04 -0.83 2.75 -91.77 -0.25 -1.08 16 3 H 0.08 1.70 8.11 -51.93 -0.42 1.28 16 4 C 0.11 1.86 9.65 -13.87 -0.13 1.73 16 5 N -0.25 -4.69 10.93 32.67 0.36 -4.33 16 6 N -0.59 -8.76 6.24 30.42 0.19 -8.57 16 7 C 0.61 9.54 7.93 -12.54 -0.10 9.44 16 8 O -0.52 -10.11 17.24 5.25 0.09 -10.02 16 9 C -0.27 -3.28 6.13 -105.05 -0.64 -3.93 16 10 C 0.09 0.91 11.50 -16.95 -0.19 0.71 16 11 N -0.29 -3.17 11.77 30.88 0.36 -2.81 16 12 N -0.31 -3.25 3.77 -10.20 -0.04 -3.29 16 13 C 0.15 1.35 6.68 -83.60 -0.56 0.79 16 14 C -0.14 -0.94 9.45 -39.40 -0.37 -1.32 16 15 C -0.09 -0.49 10.04 -39.61 -0.40 -0.89 16 16 C -0.13 -0.62 10.04 -39.55 -0.40 -1.02 16 17 C -0.10 -0.55 10.04 -39.61 -0.40 -0.95 16 18 C -0.11 -0.89 9.65 -39.40 -0.38 -1.27 16 19 C 0.13 1.39 10.61 -16.42 -0.17 1.22 16 20 C 0.03 0.82 4.43 -27.88 -0.12 0.70 16 21 C -0.52 -13.95 8.41 -34.44 -0.29 -14.24 16 22 H 0.06 1.54 7.06 -52.48 -0.37 1.17 16 23 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 24 N -0.90 -26.29 13.29 55.43 0.74 -25.56 16 25 Si 0.89 21.29 29.54 -169.99 -5.02 16.26 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 28 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 29 H 0.07 1.37 6.95 -51.93 -0.36 1.01 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.10 1.44 8.00 -52.49 -0.42 1.02 16 33 H 0.38 4.10 7.58 -182.60 -1.38 2.72 16 34 H 0.20 1.24 7.50 -52.48 -0.39 0.84 16 35 H 0.13 0.72 6.71 -52.48 -0.35 0.37 16 36 H 0.14 0.41 8.06 -52.48 -0.42 -0.02 16 37 H 0.13 0.34 8.06 -52.48 -0.42 -0.08 16 38 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 39 H 0.14 1.10 7.68 -52.48 -0.40 0.70 16 40 H 0.19 1.62 7.01 -52.48 -0.37 1.25 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 377.50 15.07 5.69 5.69 Total: -1.00 -35.37 377.50 -8.38 -43.75 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -6.57 Total: -0.67 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -4.18 Total: -10.46 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: 1.61 Total: -44.56 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.09 Total: -10.02 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.37 -8.38 -43.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766021513.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.306 kcal (2) G-P(sol) polarization free energy of solvation -35.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds