Wall clock time and date at job start Tue Mar 31 2020 14:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 110.00952 * 2 1 4 4 C 1.50977 * 109.95385 * 238.75711 * 2 1 3 5 5 N 1.29725 * 128.67524 * 50.10641 * 4 2 1 6 6 N 1.28918 * 109.42574 * 179.58342 * 5 4 2 7 7 C 1.30822 * 109.74339 * 359.96217 * 6 5 4 8 8 N 1.34788 * 107.11831 * 0.20464 * 7 6 5 9 9 C 1.46222 * 128.60224 * 179.52491 * 8 7 6 10 10 C 1.53335 * 109.17597 * 161.74290 * 9 8 7 11 11 N 1.47077 * 109.24801 * 45.63893 * 10 9 8 12 12 C 1.34770 * 120.94916 * 116.41364 * 11 10 9 13 13 O 1.21283 * 119.99867 * 174.56162 * 12 11 10 14 14 C 1.50696 * 120.00273 * 354.56712 * 12 11 10 15 15 C 1.50698 * 109.47386 * 179.97438 * 14 12 11 16 16 C 1.37637 * 120.12989 * 264.99776 * 15 14 12 17 17 C 1.38617 * 120.25252 * 180.02562 * 16 15 14 18 18 C 1.38659 * 120.49889 * 359.97438 * 17 16 15 19 19 C 1.37601 * 120.24669 * 0.02698 * 18 17 16 20 20 C 1.40697 * 120.12686 * 84.72573 * 15 14 12 21 21 C 1.41392 * 120.24497 * 359.97438 * 20 15 14 22 22 H 1.07995 * 120.00245 * 330.55948 * 21 20 15 23 23 C 1.39948 * 120.00002 * 150.55827 * 21 20 15 24 24 N 1.30824 * 120.00035 * 349.47226 * 23 21 20 25 25 Si 1.86796 * 120.00144 * 169.46702 * 23 21 20 26 26 H 1.48508 * 109.47026 * 59.99981 * 25 23 21 27 27 H 1.48504 * 109.47307 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47325 * 300.00178 * 25 23 21 29 29 H 1.08994 * 109.47139 * 190.38446 * 1 2 3 30 30 H 1.09002 * 109.47233 * 310.38773 * 1 2 3 31 31 H 1.09003 * 109.47374 * 70.38282 * 1 2 3 32 32 H 1.08003 * 126.43658 * 180.16549 * 7 6 5 33 33 H 1.09000 * 109.51910 * 281.65265 * 9 8 7 34 34 H 1.08997 * 109.52053 * 41.77462 * 9 8 7 35 35 H 1.09004 * 109.50524 * 165.57052 * 10 9 8 36 36 H 1.08998 * 109.51064 * 285.65711 * 10 9 8 37 37 H 1.08998 * 109.47248 * 299.99679 * 14 12 11 38 38 H 1.08999 * 109.47293 * 59.99769 * 14 12 11 39 39 H 1.08005 * 119.87389 * 0.02562 * 16 15 14 40 40 H 1.08002 * 119.74919 * 179.97438 * 17 16 15 41 41 H 1.07994 * 119.87484 * 179.97438 * 18 17 16 42 42 H 1.08000 * 120.12283 * 179.97438 * 19 18 17 43 43 H 0.97002 * 120.00160 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9030 1.0242 0.0000 4 6 2.0452 -0.7361 -1.2133 5 7 1.7113 -0.5819 -2.4573 6 7 2.3893 -1.3998 -3.1878 7 6 3.1867 -2.1102 -2.4322 8 7 2.9873 -1.7116 -1.1601 9 6 3.6264 -2.2018 0.0603 10 6 3.4332 -1.1710 1.1789 11 7 2.0336 -0.7192 1.1855 12 6 1.2339 -0.9559 2.2441 13 8 0.1140 -0.4913 2.2739 14 6 1.7311 -1.7977 3.3908 15 6 0.6528 -1.9077 4.4378 16 6 0.6394 -1.0438 5.5092 17 6 -0.3509 -1.1430 6.4740 18 6 -1.3383 -2.1111 6.3720 19 6 -1.3446 -2.9855 5.3095 20 6 -0.3474 -2.8903 4.3210 21 6 -0.3474 -3.7793 3.2215 22 1 0.0616 -3.4648 2.2728 23 6 -0.8774 -5.0668 3.3626 24 7 -1.1826 -5.5220 4.5506 25 14 -1.1494 -6.1354 1.8548 26 1 0.1464 -6.3547 1.1633 27 1 -1.7167 -7.4433 2.2708 28 1 -2.0946 -5.4576 0.9316 29 1 -0.3633 -1.0108 0.1852 30 1 -0.3634 0.6659 0.7828 31 1 -0.3634 0.3450 -0.9680 32 1 3.8748 -2.8731 -2.7651 33 1 3.1722 -3.1480 0.3545 34 1 4.6911 -2.3494 -0.1202 35 1 3.6731 -1.6270 2.1395 36 1 4.0907 -0.3189 1.0063 37 1 1.9873 -2.7927 3.0268 38 1 2.6146 -1.3319 3.8273 39 1 1.4034 -0.2856 5.5985 40 1 -0.3534 -0.4611 7.3116 41 1 -2.1048 -2.1797 7.1297 42 1 -2.1144 -3.7391 5.2323 43 1 -1.5496 -6.4145 4.6485 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000791161250.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:07 Heat of formation + Delta-G solvation = 66.867923 kcal Electronic energy + Delta-G solvation = -28240.126967 eV Core-core repulsion = 24479.370514 eV Total energy + Delta-G solvation = -3760.756453 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.33899 -41.24835 -39.31951 -37.78580 -35.58768 -35.47083 -34.21537 -32.78567 -31.31368 -31.07842 -29.73132 -28.35840 -26.93339 -25.74104 -24.64463 -23.28945 -22.79975 -22.31945 -21.24568 -19.75413 -19.04933 -18.62348 -17.72874 -17.47627 -17.22438 -17.01688 -16.61274 -16.18528 -15.85986 -15.61676 -15.37016 -15.10811 -14.87698 -14.41186 -14.21950 -14.07861 -13.54948 -13.47097 -13.35894 -13.16914 -12.99742 -12.92823 -12.83354 -12.78266 -12.55362 -12.46498 -12.38435 -12.14277 -11.50925 -11.31442 -11.20099 -11.11968 -11.07440 -10.46926 -10.23970 -9.86556 -9.17364 -9.12784 -8.56288 -6.31517 0.78677 0.97847 1.13003 1.31840 1.39869 1.41043 1.48913 1.68371 1.80257 1.94576 2.15799 2.80388 3.03480 3.38623 3.62955 3.67065 3.87852 3.98999 4.04316 4.11874 4.12523 4.33620 4.40228 4.42304 4.51010 4.61310 4.66606 4.73118 4.74929 4.75817 4.81086 4.93406 5.01736 5.07645 5.19637 5.25028 5.38847 5.43356 5.56331 5.78855 5.86712 6.04387 6.17058 6.23319 6.34639 6.42844 6.75395 6.99964 7.12721 7.30128 7.63705 8.38970 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.012347 B = 0.004843 C = 0.003943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.162766 B = 5780.157014 C = 7100.102735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.241 3.759 3 H 0.120 0.880 4 C 0.162 3.838 5 N -0.322 5.322 6 N -0.352 5.352 7 C 0.174 3.826 8 N -0.467 5.467 9 C 0.079 3.921 10 C 0.087 3.913 11 N -0.628 5.628 12 C 0.525 3.475 13 O -0.549 6.549 14 C -0.065 4.065 15 C -0.181 4.181 16 C -0.090 4.090 17 C -0.236 4.236 18 C -0.121 4.121 19 C -0.188 4.188 20 C 0.097 3.903 21 C -0.478 4.478 22 H 0.066 0.934 23 C 0.039 3.961 24 N -0.832 5.832 25 Si 0.961 3.039 26 H -0.252 1.252 27 H -0.268 1.268 28 H -0.280 1.280 29 H 0.028 0.972 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.267 0.733 33 H 0.094 0.906 34 H 0.159 0.841 35 H 0.139 0.861 36 H 0.111 0.889 37 H 0.100 0.900 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.115 0.885 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.134 3.903 -6.024 17.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.135 3.865 3 H 0.137 0.863 4 C -0.109 4.109 5 N -0.162 5.162 6 N -0.191 5.191 7 C -0.115 4.115 8 N -0.158 5.158 9 C -0.043 4.043 10 C -0.035 4.035 11 N -0.365 5.365 12 C 0.315 3.685 13 O -0.424 6.424 14 C -0.104 4.104 15 C -0.183 4.183 16 C -0.108 4.108 17 C -0.255 4.255 18 C -0.139 4.139 19 C -0.208 4.208 20 C 0.095 3.905 21 C -0.508 4.508 22 H 0.084 0.916 23 C -0.175 4.175 24 N -0.459 5.459 25 Si 0.784 3.216 26 H -0.176 1.176 27 H -0.192 1.192 28 H -0.205 1.205 29 H 0.048 0.952 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.283 0.717 33 H 0.113 0.887 34 H 0.176 0.824 35 H 0.157 0.843 36 H 0.129 0.871 37 H 0.118 0.882 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.133 0.867 41 H 0.120 0.880 42 H 0.112 0.888 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 14.777 4.424 -7.090 16.976 hybrid contribution -0.325 -1.378 0.490 1.498 sum 14.452 3.047 -6.600 16.177 Atomic orbital electron populations 1.21890 0.92203 1.02173 1.02024 1.19632 0.95190 0.94348 0.77328 0.86306 1.25096 0.94126 0.94941 0.96755 1.73921 1.21705 1.20297 1.00241 1.74382 1.09151 1.07755 1.27768 1.27187 1.02240 1.02329 0.79715 1.46344 1.30993 1.28541 1.09877 1.22896 1.01941 0.98890 0.80564 1.22460 0.80960 0.99007 1.01070 1.48513 1.13216 1.58866 1.15860 1.21255 0.84507 0.79567 0.83171 1.90712 1.21369 1.50958 1.79394 1.20351 0.98050 1.00172 0.91866 1.19561 0.98711 1.01934 0.98065 1.20760 0.98232 0.97535 0.94290 1.20761 0.99609 1.02912 1.02236 1.20960 0.98822 0.96426 0.97740 1.21342 1.00566 1.00941 0.97940 1.17693 0.89492 0.91070 0.92246 1.19470 1.36801 0.97185 0.97388 0.91572 1.26503 0.92530 0.99556 0.98893 1.69849 1.33300 1.18067 1.24666 0.85564 0.79783 0.77505 0.78751 1.17565 1.19186 1.20513 0.95235 0.89861 0.91845 0.71740 0.88737 0.82369 0.84297 0.87063 0.88178 0.85944 0.86012 0.86732 0.88043 0.88794 0.90587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.17 7.71 71.98 0.56 -3.62 16 2 C 0.24 6.42 3.84 44.14 0.17 6.59 16 3 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 4 C 0.16 4.43 7.17 138.23 0.99 5.42 16 5 N -0.32 -10.62 12.13 -50.19 -0.61 -11.23 16 6 N -0.35 -10.54 12.23 -60.27 -0.74 -11.28 16 7 C 0.17 3.41 12.81 180.25 2.31 5.72 16 8 N -0.47 -9.29 3.11 -519.24 -1.62 -10.91 16 9 C 0.08 0.87 7.18 86.54 0.62 1.49 16 10 C 0.09 1.08 6.33 86.38 0.55 1.62 16 11 N -0.63 -15.29 2.97 -796.96 -2.37 -17.66 16 12 C 0.52 17.51 6.98 87.66 0.61 18.12 16 13 O -0.55 -23.73 12.22 -3.04 -0.04 -23.77 16 14 C -0.07 -2.08 3.59 29.10 0.10 -1.97 16 15 C -0.18 -7.89 4.43 -19.41 -0.09 -7.98 16 16 C -0.09 -3.69 9.66 22.22 0.21 -3.47 16 17 C -0.24 -10.11 10.05 22.46 0.23 -9.89 16 18 C -0.12 -5.76 10.02 22.22 0.22 -5.54 16 19 C -0.19 -10.11 8.66 22.73 0.20 -9.92 16 20 C 0.10 5.04 5.55 -21.29 -0.12 4.93 16 21 C -0.48 -24.73 8.07 23.46 0.19 -24.54 16 22 H 0.07 3.35 6.77 -2.91 -0.02 3.33 16 23 C 0.04 1.94 5.26 85.26 0.45 2.39 16 24 N -0.83 -43.36 10.86 21.83 0.24 -43.13 16 25 Si 0.96 38.94 29.57 68.60 2.03 40.97 16 26 H -0.25 -9.41 7.11 99.48 0.71 -8.71 16 27 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 28 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 29 H 0.03 1.17 7.34 -2.39 -0.02 1.15 16 30 H 0.08 2.97 6.47 -2.39 -0.02 2.95 16 31 H 0.06 2.02 8.06 -2.39 -0.02 2.00 16 32 H 0.27 2.11 8.06 -2.91 -0.02 2.08 16 33 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.16 0.20 8.14 -2.39 -0.02 0.18 16 35 H 0.14 1.17 5.97 -2.39 -0.01 1.16 16 36 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.10 3.15 7.08 -2.39 -0.02 3.13 16 38 H 0.12 2.74 7.45 -2.39 -0.02 2.72 16 39 H 0.12 4.02 8.06 -2.91 -0.02 4.00 16 40 H 0.11 4.18 8.06 -2.91 -0.02 4.15 16 41 H 0.10 4.34 8.06 -2.91 -0.02 4.32 16 42 H 0.09 5.38 6.25 -2.91 -0.02 5.36 16 43 H 0.28 13.60 8.30 -92.71 -0.77 12.83 16 Total: -1.00 -78.25 350.19 5.14 -73.11 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: 1.04 Total: 24.55 kcal Atomic # 6 Polarization: -27.85 SS G_CDS: 7.20 Total: -20.65 kcal Atomic # 7 Polarization: -89.11 SS G_CDS: -5.09 Total: -94.20 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -0.04 Total: -23.77 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Total: -78.25 5.14 -73.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791161250.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.974 kcal (2) G-P(sol) polarization free energy of solvation -78.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds