Wall clock time and date at job start Tue Mar 31 2020 14:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00522 * 2 1 4 4 C 1.52998 * 109.47481 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.46832 * 65.49178 * 4 3 2 6 6 C 1.36937 * 120.00064 * 275.29045 * 5 4 3 7 7 H 1.07997 * 120.00138 * 354.16260 * 6 5 4 8 8 C 1.38818 * 120.00319 * 174.15610 * 6 5 4 9 9 N 1.31622 * 119.99546 * 5.20177 * 8 6 5 10 10 Si 1.86791 * 120.00332 * 185.19824 * 8 6 5 11 11 H 1.48501 * 109.47145 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47446 * 119.99939 * 10 8 6 13 13 H 1.48505 * 109.47251 * 240.00356 * 10 8 6 14 14 C 1.46498 * 120.00311 * 95.29895 * 5 4 3 15 15 N 1.46507 * 109.46951 * 3.59765 * 14 5 4 16 16 C 1.37339 * 120.92544 * 261.14910 * 15 14 5 17 17 C 1.33311 * 114.80867 * 179.97438 * 16 15 14 18 18 S 1.76558 * 106.54148 * 0.02562 * 17 16 15 19 19 C 1.33891 * 120.92020 * 81.12639 * 15 14 5 20 20 O 1.21830 * 127.09120 * 0.02914 * 19 15 14 21 21 C 1.50349 * 126.48257 * 179.75177 * 17 16 15 22 22 C 1.53270 * 108.64328 * 344.96521 * 21 17 16 23 23 H 1.09002 * 109.40568 * 288.16457 * 22 21 17 24 24 C 1.52996 * 109.76720 * 167.87871 * 22 21 17 25 25 C 1.53176 * 108.88958 * 47.90995 * 22 21 17 26 26 C 1.52340 * 123.42790 * 359.94583 * 16 15 14 27 27 H 1.09000 * 109.47394 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46361 * 299.99717 * 1 2 3 29 29 H 1.09001 * 109.46893 * 59.99305 * 1 2 3 30 30 H 1.09002 * 109.46712 * 60.00512 * 3 2 1 31 31 H 1.08999 * 109.47333 * 300.00801 * 3 2 1 32 32 H 1.08997 * 109.47164 * 305.49379 * 4 3 2 33 33 H 1.09006 * 109.47273 * 185.49342 * 4 3 2 34 34 H 0.96995 * 119.99724 * 184.99930 * 9 8 6 35 35 H 1.08999 * 109.47395 * 243.60192 * 14 5 4 36 36 H 1.09002 * 109.47638 * 123.60052 * 14 5 4 37 37 H 1.08996 * 109.62246 * 104.60311 * 21 17 16 38 38 H 1.08998 * 109.61424 * 225.14656 * 21 17 16 39 39 H 1.08996 * 109.47080 * 300.46144 * 24 22 21 40 40 H 1.09004 * 109.46647 * 60.45962 * 24 22 21 41 41 H 1.08993 * 109.47565 * 180.45875 * 24 22 21 42 42 H 1.09002 * 109.45065 * 170.29509 * 25 22 21 43 43 H 1.09005 * 109.42971 * 50.35668 * 25 22 21 44 44 H 1.08998 * 109.57105 * 281.73324 * 26 16 15 45 45 H 1.09001 * 109.56974 * 41.97958 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9765 0.5750 -1.2577 6 6 3.9939 -0.7880 -1.3886 7 1 3.7737 -1.4151 -0.5375 8 6 4.2946 -1.3636 -2.6155 9 7 4.6626 -0.6047 -3.6260 10 14 4.1769 -3.2152 -2.8324 11 1 3.7441 -3.8367 -1.5551 12 1 3.1871 -3.5274 -3.8945 13 1 5.5055 -3.7536 -3.2202 14 6 4.3990 1.4236 -2.3746 15 7 4.3717 2.8280 -1.9585 16 6 3.3096 3.6382 -2.2774 17 6 3.4112 4.8926 -1.8378 18 16 4.9514 5.0021 -0.9816 19 6 5.3814 3.3572 -1.2562 20 8 6.3957 2.7919 -0.8877 21 6 2.4092 5.9950 -2.0410 22 6 1.4314 5.5714 -3.1427 23 1 1.9386 5.5984 -4.1071 24 6 0.2341 6.5236 -3.1660 25 6 0.9486 4.1462 -2.8562 26 6 2.0997 3.1621 -3.0713 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5140 -0.8899 30 1 1.6888 1.8462 0.8901 31 1 1.6887 1.8464 -0.8899 32 1 3.8509 0.5609 0.8358 33 1 3.9786 2.1756 0.0977 34 1 4.8023 -0.9975 -4.5018 35 1 3.7210 1.2808 -3.2161 36 1 5.4116 1.1529 -2.6740 37 1 1.8614 6.1671 -1.1145 38 1 2.9248 6.9078 -2.3393 39 1 -0.2686 6.4990 -2.1992 40 1 0.5798 7.5370 -3.3700 41 1 -0.4618 6.2134 -3.9454 42 1 0.1285 3.8985 -3.5300 43 1 0.6031 4.0810 -1.8244 44 1 2.3515 3.1207 -4.1309 45 1 1.8041 2.1710 -2.7271 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840153547.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:29 Heat of formation + Delta-G solvation = -23.617917 kcal Electronic energy + Delta-G solvation = -27830.304751 eV Core-core repulsion = 24168.775738 eV Total energy + Delta-G solvation = -3661.529013 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.61130 -38.18660 -37.35974 -36.15586 -34.93750 -31.61644 -31.31108 -30.81380 -28.67192 -26.93401 -25.97363 -25.80216 -23.82812 -22.62793 -22.40943 -21.00510 -20.07366 -18.79671 -17.88894 -17.37678 -16.26029 -15.82752 -15.47822 -15.34774 -15.03080 -14.63403 -14.46269 -14.33014 -14.15636 -13.51644 -13.45647 -13.36680 -13.10863 -12.92661 -12.69430 -12.27386 -12.10534 -11.94597 -11.70357 -11.59762 -11.18485 -11.12274 -10.96653 -10.88089 -10.74881 -10.71245 -10.54519 -10.40566 -10.17461 -10.07895 -9.84513 -9.40841 -9.04709 -8.92463 -8.61416 -7.40934 -7.08257 -5.82842 -3.16032 1.45657 1.78248 2.19968 2.74914 3.38804 3.42703 3.48038 3.49741 4.41540 4.47982 4.65213 4.72524 4.76311 4.96302 5.23086 5.28122 5.40714 5.42489 5.51612 5.54248 5.58222 5.59571 5.65845 5.67954 5.72264 5.80130 5.93635 5.96786 5.97814 5.99305 6.03566 6.09668 6.12467 6.24716 6.27886 6.33369 6.58036 6.71555 6.87674 7.31577 7.59758 7.76405 7.80678 7.99079 8.21360 9.14725 9.72440 10.17596 11.27339 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.012345 B = 0.005362 C = 0.004677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.521429 B = 5220.672797 C = 5985.158163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.362 6.362 3 C 0.044 3.956 4 C 0.150 3.850 5 N -0.608 5.608 6 C -0.202 4.202 7 H 0.086 0.914 8 C -0.018 4.018 9 N -0.943 5.943 10 Si 0.920 3.080 11 H -0.279 1.279 12 H -0.291 1.291 13 H -0.292 1.292 14 C 0.393 3.607 15 N -0.541 5.541 16 C 0.130 3.870 17 C -0.234 4.234 18 S -0.050 6.050 19 C 0.494 3.506 20 O -0.467 6.467 21 C -0.017 4.017 22 C -0.090 4.090 23 H 0.076 0.924 24 C -0.144 4.144 25 C -0.109 4.109 26 C -0.061 4.061 27 H 0.077 0.923 28 H 0.027 0.973 29 H 0.032 0.968 30 H 0.027 0.973 31 H 0.042 0.958 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.256 0.744 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.088 0.912 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.836 13.560 0.995 17.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.280 6.280 3 C -0.036 4.036 4 C 0.022 3.978 5 N -0.333 5.333 6 C -0.331 4.331 7 H 0.103 0.897 8 C -0.211 4.211 9 N -0.594 5.594 10 Si 0.751 3.249 11 H -0.204 1.204 12 H -0.218 1.218 13 H -0.220 1.220 14 C 0.187 3.813 15 N -0.263 5.263 16 C 0.018 3.982 17 C -0.354 4.354 18 S 0.193 5.807 19 C 0.175 3.825 20 O -0.346 6.346 21 C -0.056 4.056 22 C -0.110 4.110 23 H 0.095 0.905 24 C -0.202 4.202 25 C -0.147 4.147 26 C -0.101 4.101 27 H 0.096 0.904 28 H 0.046 0.954 29 H 0.051 0.949 30 H 0.045 0.955 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.107 0.893 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.217 13.840 1.741 16.719 hybrid contribution -0.858 -1.821 -0.818 2.173 sum -10.076 12.019 0.923 15.711 Atomic orbital electron populations 1.22632 0.83428 1.01784 0.98636 1.88114 1.17395 1.27514 1.94942 1.23465 0.97686 0.84538 0.97893 1.20732 0.89891 0.97029 0.90101 1.44412 1.75701 1.03393 1.09837 1.19431 1.37279 0.80553 0.95791 0.89668 1.24800 1.01615 0.98687 0.95971 1.69662 1.54853 1.33653 1.01253 0.85881 0.77057 0.84412 0.77549 1.20424 1.21837 1.21960 1.22230 1.03075 0.67696 0.88312 1.47418 1.15829 1.15527 1.47499 1.20187 0.90404 0.89604 0.98010 1.23302 1.00956 0.97909 1.13208 1.84601 1.18656 1.14651 1.62773 1.21211 0.86560 0.91792 0.82981 1.90950 1.25471 1.64501 1.53678 1.19853 0.92967 0.93971 0.98843 1.21228 0.95763 0.94930 0.99049 0.90534 1.21801 0.97475 0.98991 1.01926 1.21598 0.97026 0.93643 1.02435 1.20812 0.89744 1.00277 0.99253 0.90441 0.95420 0.94932 0.95509 0.93958 0.92915 0.93184 0.93308 0.89282 0.89098 0.90768 0.90752 0.92565 0.92590 0.92467 0.90804 0.91454 0.89335 0.88652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.60 16 2 O -0.36 -7.20 9.94 -35.23 -0.35 -7.55 16 3 C 0.04 0.81 6.28 37.16 0.23 1.05 16 4 C 0.15 3.24 5.80 -4.05 -0.02 3.22 16 5 N -0.61 -14.93 2.94 -176.95 -0.52 -15.45 16 6 C -0.20 -5.43 9.09 -15.06 -0.14 -5.57 16 7 H 0.09 2.33 7.83 -52.49 -0.41 1.92 16 8 C -0.02 -0.48 5.45 -17.43 -0.10 -0.58 16 9 N -0.94 -26.15 9.44 55.49 0.52 -25.63 16 10 Si 0.92 22.08 29.56 -169.99 -5.02 17.06 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 14 C 0.39 9.34 4.49 -63.75 -0.29 9.06 16 15 N -0.54 -10.87 1.65 -119.74 -0.20 -11.06 16 16 C 0.13 2.12 6.27 -81.03 -0.51 1.61 16 17 C -0.23 -3.37 6.41 -36.20 -0.23 -3.60 16 18 S -0.05 -0.83 22.96 -107.50 -2.47 -3.30 16 19 C 0.49 10.39 6.40 53.66 0.34 10.73 16 20 O -0.47 -11.50 17.65 5.07 0.09 -11.41 16 21 C -0.02 -0.18 5.60 -27.91 -0.16 -0.33 16 22 C -0.09 -0.83 2.75 -90.39 -0.25 -1.08 16 23 H 0.08 0.74 8.12 -51.93 -0.42 0.31 16 24 C -0.14 -1.04 9.18 37.16 0.34 -0.70 16 25 C -0.11 -1.13 5.16 -26.66 -0.14 -1.27 16 26 C -0.06 -0.86 4.54 -27.09 -0.12 -0.98 16 27 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.04 0.76 5.49 -51.93 -0.28 0.48 16 32 H 0.05 1.18 8.08 -51.93 -0.42 0.76 16 33 H 0.05 1.06 5.24 -51.93 -0.27 0.79 16 34 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 35 H 0.09 2.19 5.66 -51.93 -0.29 1.89 16 36 H 0.09 2.55 6.87 -51.93 -0.36 2.20 16 37 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 43 H 0.07 0.71 8.11 -51.93 -0.42 0.29 16 44 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.10 1.56 5.91 -51.93 -0.31 1.25 16 LS Contribution 363.00 15.07 5.47 5.47 Total: -1.00 -30.32 363.00 -9.36 -39.68 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -6.97 Total: -0.96 kcal Atomic # 6 Polarization: 13.07 SS G_CDS: 0.08 Total: 13.15 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: -0.19 Total: -52.15 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -0.26 Total: -18.96 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 16 Polarization: -0.83 SS G_CDS: -2.47 Total: -3.30 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.32 -9.36 -39.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840153547.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.063 kcal (2) G-P(sol) polarization free energy of solvation -30.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds