Wall clock time and date at job start Tue Mar 31 2020 14:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00522 * 2 1 4 4 C 1.52998 * 109.47481 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.46832 * 65.49178 * 4 3 2 6 6 C 1.36937 * 120.00064 * 275.29045 * 5 4 3 7 7 H 1.07997 * 120.00138 * 354.16260 * 6 5 4 8 8 C 1.38818 * 120.00319 * 174.15610 * 6 5 4 9 9 N 1.31622 * 119.99546 * 5.20177 * 8 6 5 10 10 Si 1.86791 * 120.00332 * 185.19824 * 8 6 5 11 11 H 1.48501 * 109.47145 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47446 * 119.99939 * 10 8 6 13 13 H 1.48505 * 109.47251 * 240.00356 * 10 8 6 14 14 C 1.46498 * 120.00311 * 95.29895 * 5 4 3 15 15 N 1.46507 * 109.46951 * 3.59765 * 14 5 4 16 16 C 1.37339 * 120.92544 * 261.14910 * 15 14 5 17 17 C 1.33311 * 114.80867 * 179.97438 * 16 15 14 18 18 S 1.76558 * 106.54148 * 0.02562 * 17 16 15 19 19 C 1.33891 * 120.92020 * 81.12639 * 15 14 5 20 20 O 1.21830 * 127.09120 * 0.02914 * 19 15 14 21 21 C 1.50349 * 126.48257 * 179.75177 * 17 16 15 22 22 C 1.53270 * 108.64328 * 344.96521 * 21 17 16 23 23 H 1.09002 * 109.40568 * 288.16457 * 22 21 17 24 24 C 1.52996 * 109.76720 * 167.87871 * 22 21 17 25 25 C 1.53176 * 108.88958 * 47.90995 * 22 21 17 26 26 C 1.52340 * 123.42790 * 359.94583 * 16 15 14 27 27 H 1.09000 * 109.47394 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46361 * 299.99717 * 1 2 3 29 29 H 1.09001 * 109.46893 * 59.99305 * 1 2 3 30 30 H 1.09002 * 109.46712 * 60.00512 * 3 2 1 31 31 H 1.08999 * 109.47333 * 300.00801 * 3 2 1 32 32 H 1.08997 * 109.47164 * 305.49379 * 4 3 2 33 33 H 1.09006 * 109.47273 * 185.49342 * 4 3 2 34 34 H 0.96995 * 119.99724 * 184.99930 * 9 8 6 35 35 H 1.08999 * 109.47395 * 243.60192 * 14 5 4 36 36 H 1.09002 * 109.47638 * 123.60052 * 14 5 4 37 37 H 1.08996 * 109.62246 * 104.60311 * 21 17 16 38 38 H 1.08998 * 109.61424 * 225.14656 * 21 17 16 39 39 H 1.08996 * 109.47080 * 300.46144 * 24 22 21 40 40 H 1.09004 * 109.46647 * 60.45962 * 24 22 21 41 41 H 1.08993 * 109.47565 * 180.45875 * 24 22 21 42 42 H 1.09002 * 109.45065 * 170.29509 * 25 22 21 43 43 H 1.09005 * 109.42971 * 50.35668 * 25 22 21 44 44 H 1.08998 * 109.57105 * 281.73324 * 26 16 15 45 45 H 1.09001 * 109.56974 * 41.97958 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9765 0.5750 -1.2577 6 6 3.9939 -0.7880 -1.3886 7 1 3.7737 -1.4151 -0.5375 8 6 4.2946 -1.3636 -2.6155 9 7 4.6626 -0.6047 -3.6260 10 14 4.1769 -3.2152 -2.8324 11 1 3.7441 -3.8367 -1.5551 12 1 3.1871 -3.5274 -3.8945 13 1 5.5055 -3.7536 -3.2202 14 6 4.3990 1.4236 -2.3746 15 7 4.3717 2.8280 -1.9585 16 6 3.3096 3.6382 -2.2774 17 6 3.4112 4.8926 -1.8378 18 16 4.9514 5.0021 -0.9816 19 6 5.3814 3.3572 -1.2562 20 8 6.3957 2.7919 -0.8877 21 6 2.4092 5.9950 -2.0410 22 6 1.4314 5.5714 -3.1427 23 1 1.9386 5.5984 -4.1071 24 6 0.2341 6.5236 -3.1660 25 6 0.9486 4.1462 -2.8562 26 6 2.0997 3.1621 -3.0713 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5140 -0.8899 30 1 1.6888 1.8462 0.8901 31 1 1.6887 1.8464 -0.8899 32 1 3.8509 0.5609 0.8358 33 1 3.9786 2.1756 0.0977 34 1 4.8023 -0.9975 -4.5018 35 1 3.7210 1.2808 -3.2161 36 1 5.4116 1.1529 -2.6740 37 1 1.8614 6.1671 -1.1145 38 1 2.9248 6.9078 -2.3393 39 1 -0.2686 6.4990 -2.1992 40 1 0.5798 7.5370 -3.3700 41 1 -0.4618 6.2134 -3.9454 42 1 0.1285 3.8985 -3.5300 43 1 0.6031 4.0810 -1.8244 44 1 2.3515 3.1207 -4.1309 45 1 1.8041 2.1710 -2.7271 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840153547.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:28 Heat of formation + Delta-G solvation = -41.026487 kcal Electronic energy + Delta-G solvation = -27831.059643 eV Core-core repulsion = 24168.775738 eV Total energy + Delta-G solvation = -3662.283905 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.10162 -39.43264 -38.87061 -37.65104 -36.58274 -33.54162 -32.32902 -32.02834 -30.30616 -28.53437 -27.18291 -26.99221 -25.54993 -24.04229 -23.65315 -22.31918 -21.52076 -20.16941 -19.35618 -19.05420 -17.93597 -17.45361 -16.94670 -16.77483 -16.50564 -16.02758 -15.81418 -15.79218 -15.29826 -15.11896 -14.81837 -14.66735 -14.38626 -14.23261 -13.83518 -13.75676 -13.52649 -12.94454 -12.92380 -12.79211 -12.76684 -12.66098 -12.57775 -12.52365 -12.21740 -12.05053 -11.86494 -11.72431 -11.59815 -11.40873 -11.16743 -11.02662 -10.67721 -10.43107 -10.36284 -9.07842 -8.80369 -7.89590 -5.25354 -0.05606 0.40302 0.83469 1.20855 1.45437 1.47417 1.58127 1.95298 2.50512 3.02536 3.31884 3.48010 3.56930 3.88302 3.90961 4.03702 4.16986 4.24914 4.30912 4.44288 4.47046 4.50120 4.53271 4.60403 4.65468 4.69737 4.76047 4.87550 4.89125 4.91366 4.94625 5.04071 5.07950 5.11601 5.21825 5.28332 5.30666 5.44576 5.50395 5.62777 5.66605 5.99596 6.16812 6.39401 6.48487 7.08335 7.71944 8.14707 9.18175 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.012345 B = 0.005362 C = 0.004677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.521429 B = 5220.672797 C = 5985.158163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.400 6.400 3 C 0.057 3.943 4 C 0.149 3.851 5 N -0.617 5.617 6 C -0.210 4.210 7 H 0.076 0.924 8 C -0.064 4.064 9 N -0.962 5.962 10 Si 0.978 3.022 11 H -0.273 1.273 12 H -0.286 1.286 13 H -0.299 1.299 14 C 0.422 3.578 15 N -0.544 5.544 16 C 0.096 3.904 17 C -0.204 4.204 18 S 0.008 5.992 19 C 0.462 3.538 20 O -0.527 6.527 21 C -0.019 4.019 22 C -0.084 4.084 23 H 0.074 0.926 24 C -0.139 4.139 25 C -0.102 4.102 26 C -0.055 4.055 27 H 0.086 0.914 28 H 0.052 0.948 29 H 0.042 0.958 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.035 0.965 33 H 0.049 0.951 34 H 0.252 0.748 35 H 0.079 0.921 36 H 0.037 0.963 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.092 0.908 43 H 0.071 0.929 44 H 0.086 0.914 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.962 16.066 1.251 21.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.319 6.319 3 C -0.022 4.022 4 C 0.022 3.978 5 N -0.344 5.344 6 C -0.340 4.340 7 H 0.094 0.906 8 C -0.255 4.255 9 N -0.614 5.614 10 Si 0.808 3.192 11 H -0.198 1.198 12 H -0.212 1.212 13 H -0.226 1.226 14 C 0.214 3.786 15 N -0.265 5.265 16 C -0.013 4.013 17 C -0.324 4.324 18 S 0.253 5.747 19 C 0.145 3.855 20 O -0.411 6.411 21 C -0.059 4.059 22 C -0.104 4.104 23 H 0.092 0.908 24 C -0.196 4.196 25 C -0.140 4.140 26 C -0.095 4.095 27 H 0.104 0.896 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.096 0.904 36 H 0.055 0.945 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.111 0.889 43 H 0.090 0.910 44 H 0.104 0.896 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.408 16.412 2.015 20.673 hybrid contribution 0.088 -2.461 -0.846 2.604 sum -12.320 13.951 1.169 18.649 Atomic orbital electron populations 1.22836 0.80718 1.03004 1.00264 1.88044 1.20418 1.28132 1.95280 1.23172 0.94899 0.84671 0.99463 1.20798 0.92474 0.96287 0.88238 1.44517 1.75999 1.02986 1.10870 1.19519 1.37075 0.81790 0.95581 0.90592 1.25489 1.01850 1.02257 0.95898 1.69905 1.55428 1.34809 1.01236 0.84990 0.76511 0.80176 0.77563 1.19802 1.21249 1.22626 1.21292 0.99453 0.69771 0.88085 1.47243 1.17064 1.14602 1.47583 1.20615 0.90521 0.90040 1.00123 1.24058 1.00157 0.98112 1.10027 1.84380 1.19308 1.09154 1.61863 1.21876 0.86265 0.94018 0.83306 1.90902 1.27375 1.66926 1.55915 1.20169 0.92346 0.92846 1.00509 1.21212 0.96331 0.94563 0.98285 0.90753 1.21754 0.96416 0.98756 1.02695 1.21615 0.95771 0.93310 1.03267 1.20834 0.90079 1.00048 0.98500 0.89580 0.92936 0.93977 0.92665 0.93308 0.94621 0.93249 0.93820 0.90382 0.94484 0.88625 0.88792 0.91826 0.91569 0.91748 0.88909 0.90987 0.89607 0.91403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 11.01 113.37 1.25 2.03 16 2 O -0.40 -15.65 9.94 -148.98 -1.48 -17.13 16 3 C 0.06 2.07 6.28 71.98 0.45 2.52 16 4 C 0.15 6.61 5.80 86.38 0.50 7.11 16 5 N -0.62 -31.85 2.94 -713.74 -2.10 -33.95 16 6 C -0.21 -11.80 9.09 84.03 0.76 -11.03 16 7 H 0.08 4.32 7.83 -2.91 -0.02 4.29 16 8 C -0.06 -3.61 5.45 84.86 0.46 -3.15 16 9 N -0.96 -55.92 9.44 21.65 0.20 -55.72 16 10 Si 0.98 46.61 29.56 68.60 2.03 48.63 16 11 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 13 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 14 C 0.42 21.34 4.49 170.96 0.77 22.11 16 15 N -0.54 -22.64 1.65 -651.41 -1.07 -23.71 16 16 C 0.10 3.08 6.27 41.11 0.26 3.34 16 17 C -0.20 -5.37 6.41 24.46 0.16 -5.21 16 18 S 0.01 0.25 22.96 -56.49 -1.30 -1.05 16 19 C 0.46 20.17 6.40 129.93 0.83 21.00 16 20 O -0.53 -27.69 17.65 -4.76 -0.08 -27.77 16 21 C -0.02 -0.32 5.60 29.83 0.17 -0.15 16 22 C -0.08 -1.20 2.75 -10.65 -0.03 -1.23 16 23 H 0.07 1.15 8.12 -2.39 -0.02 1.13 16 24 C -0.14 -1.31 9.18 71.98 0.66 -0.65 16 25 C -0.10 -1.78 5.16 30.64 0.16 -1.62 16 26 C -0.05 -1.49 4.54 30.36 0.14 -1.35 16 27 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.05 1.71 5.49 -2.39 -0.01 1.70 16 32 H 0.04 1.67 8.08 -2.39 -0.02 1.65 16 33 H 0.05 2.16 5.24 -2.38 -0.01 2.15 16 34 H 0.25 14.22 8.32 -92.71 -0.77 13.45 16 35 H 0.08 4.08 5.66 -2.39 -0.01 4.07 16 36 H 0.04 2.27 6.87 -2.39 -0.02 2.25 16 37 H 0.10 1.31 8.10 -2.39 -0.02 1.30 16 38 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 41 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.09 1.31 8.12 -2.39 -0.02 1.29 16 43 H 0.07 1.22 8.11 -2.38 -0.02 1.21 16 44 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.07 2.23 5.91 -2.39 -0.01 2.22 16 Total: -1.00 -71.01 363.00 3.72 -67.29 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: 0.99 Total: 9.69 kcal Atomic # 6 Polarization: 27.18 SS G_CDS: 6.54 Total: 33.71 kcal Atomic # 7 Polarization: -110.41 SS G_CDS: -2.97 Total: -113.37 kcal Atomic # 8 Polarization: -43.34 SS G_CDS: -1.57 Total: -44.91 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.63 kcal Atomic # 16 Polarization: 0.25 SS G_CDS: -1.30 Total: -1.05 kcal Total: -71.01 3.72 -67.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840153547.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.267 kcal (2) G-P(sol) polarization free energy of solvation -71.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds