Wall clock time and date at job start Tue Mar 31 2020 14:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42895 * 114.00122 * 2 1 4 4 C 1.53001 * 109.47235 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47031 * 59.74067 * 4 3 2 6 6 C 1.36931 * 119.99968 * 93.68230 * 5 4 3 7 7 H 1.08003 * 120.00383 * 229.52479 * 6 5 4 8 8 C 1.38818 * 120.00083 * 49.24957 * 6 5 4 9 9 N 1.31619 * 120.00329 * 204.73057 * 8 6 5 10 10 Si 1.86803 * 119.99681 * 24.72683 * 8 6 5 11 11 H 1.48507 * 109.47045 * 53.84852 * 10 8 6 12 12 H 1.48497 * 109.47189 * 173.84348 * 10 8 6 13 13 H 1.48494 * 109.47206 * 293.85108 * 10 8 6 14 14 C 1.46499 * 120.00280 * 273.68098 * 5 4 3 15 15 N 1.46500 * 109.47572 * 270.00400 * 14 5 4 16 16 C 1.37341 * 120.92150 * 269.74836 * 15 14 5 17 17 C 1.33303 * 114.81232 * 179.75375 * 16 15 14 18 18 S 1.76561 * 106.53896 * 0.45042 * 17 16 15 19 19 C 1.33894 * 120.92573 * 90.02139 * 15 14 5 20 20 O 1.21822 * 127.08296 * 0.02562 * 19 15 14 21 21 C 1.50347 * 126.48912 * 180.20013 * 17 16 15 22 22 C 1.53410 * 108.57429 * 15.71485 * 21 17 16 23 23 H 1.09000 * 109.58785 * 71.57491 * 22 21 17 24 24 C 1.53002 * 109.58780 * 192.01010 * 22 21 17 25 25 C 1.53175 * 108.76158 * 311.79272 * 22 21 17 26 26 C 1.52342 * 123.42273 * 0.55033 * 16 15 14 27 27 H 1.09005 * 109.46986 * 299.99957 * 1 2 3 28 28 H 1.08995 * 109.46944 * 59.99787 * 1 2 3 29 29 H 1.09000 * 109.47248 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47261 * 60.00018 * 3 2 1 31 31 H 1.08999 * 109.47399 * 299.99877 * 3 2 1 32 32 H 1.09001 * 109.47007 * 299.74362 * 4 3 2 33 33 H 1.08994 * 109.47113 * 179.74200 * 4 3 2 34 34 H 0.96993 * 119.99894 * 180.02562 * 9 8 6 35 35 H 1.09002 * 109.46966 * 30.00593 * 14 5 4 36 36 H 1.09004 * 109.47344 * 149.99639 * 14 5 4 37 37 H 1.09001 * 109.62551 * 135.44593 * 21 17 16 38 38 H 1.09007 * 109.62022 * 255.99034 * 21 17 16 39 39 H 1.09004 * 109.46845 * 60.00004 * 24 22 21 40 40 H 1.08996 * 109.47003 * 180.02562 * 24 22 21 41 41 H 1.08997 * 109.47174 * 299.99794 * 24 22 21 42 42 H 1.08995 * 109.44989 * 189.84997 * 25 22 21 43 43 H 1.09005 * 109.45174 * 309.81173 * 25 22 21 44 44 H 1.09000 * 109.78510 * 77.85728 * 26 16 15 45 45 H 1.08995 * 109.53183 * 317.50079 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9669 0.4524 -1.1940 6 6 4.3215 1.1364 -2.3260 7 1 3.9033 0.8541 -3.2809 8 6 5.2142 2.1964 -2.2454 9 7 5.1992 3.1407 -3.1622 10 14 6.4369 2.2827 -0.8357 11 1 7.2084 1.0154 -0.7713 12 1 7.3679 3.4182 -1.0568 13 1 5.7064 2.4828 0.4416 14 6 4.0188 -1.0115 -1.1763 15 7 5.3440 -1.4479 -0.7293 16 6 6.3574 -1.6632 -1.6309 17 6 7.5127 -2.0524 -1.0915 18 16 7.2467 -2.1481 0.6513 19 6 5.5992 -1.6532 0.5689 20 8 4.8254 -1.5180 1.5000 21 6 8.7870 -2.3550 -1.8297 22 6 8.6800 -1.7769 -3.2467 23 1 8.7379 -0.6893 -3.2029 24 6 9.8206 -2.3200 -4.1097 25 6 7.3356 -2.1957 -3.8494 26 6 6.2014 -1.4610 -3.1328 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.6887 1.8464 0.8900 31 1 1.6887 1.8464 -0.8900 32 1 3.8578 0.6475 0.8914 33 1 3.9788 2.1803 -0.0053 34 1 5.8232 3.8811 -3.1060 35 1 3.2607 -1.3938 -0.4927 36 1 3.8294 -1.3940 -2.1793 37 1 9.6287 -1.8970 -1.3101 38 1 8.9308 -3.4341 -1.8846 39 1 9.7553 -3.4071 -4.1561 40 1 9.7431 -1.9078 -5.1158 41 1 10.7764 -2.0318 -3.6721 42 1 7.3188 -1.9434 -4.9096 43 1 7.2035 -3.2711 -3.7300 44 1 6.2487 -0.3979 -3.3688 45 1 5.2424 -1.8648 -3.4572 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840153549.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:32 Heat of formation + Delta-G solvation = -43.094624 kcal Electronic energy + Delta-G solvation = -27730.049353 eV Core-core repulsion = 24067.675767 eV Total energy + Delta-G solvation = -3662.373586 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.34045 -38.03097 -37.49017 -36.06198 -35.04275 -31.97134 -31.02727 -30.75281 -29.10012 -27.00342 -25.92409 -25.62776 -23.92530 -22.47131 -22.23356 -21.10095 -20.16778 -18.68833 -17.68018 -17.07646 -16.32185 -15.93558 -15.77245 -15.29347 -14.95642 -14.78825 -14.48230 -14.34606 -14.06452 -13.66422 -13.43761 -13.25075 -13.04947 -12.82390 -12.66385 -12.56425 -12.02772 -11.94659 -11.83106 -11.55653 -11.46436 -11.38496 -10.98326 -10.74381 -10.61175 -10.53464 -10.32903 -10.30448 -10.15525 -9.98465 -9.87914 -9.40630 -9.10611 -8.90057 -8.60361 -7.25690 -7.01785 -6.27832 -3.82351 1.59619 1.97569 2.35676 2.86388 3.24440 3.35173 3.46252 3.56068 4.31295 4.38638 4.84165 4.87142 4.94584 4.97816 5.08323 5.22248 5.44879 5.56558 5.61016 5.64207 5.68342 5.74225 5.76446 5.85152 5.88367 5.89317 5.95528 5.95660 5.99868 6.09482 6.13402 6.19254 6.24901 6.33825 6.40702 6.51329 6.55121 6.65051 6.74720 6.91936 7.51564 7.69765 7.86021 8.02787 8.23265 8.71620 9.42582 9.89641 10.84729 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.012385 B = 0.006026 C = 0.005113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.196085 B = 4645.129437 C = 5475.233908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.382 6.382 3 C 0.050 3.950 4 C 0.131 3.869 5 N -0.573 5.573 6 C -0.291 4.291 7 H 0.079 0.921 8 C 0.063 3.937 9 N -0.878 5.878 10 Si 0.854 3.146 11 H -0.262 1.262 12 H -0.298 1.298 13 H -0.275 1.275 14 C 0.333 3.667 15 N -0.533 5.533 16 C 0.144 3.856 17 C -0.239 4.239 18 S -0.061 6.061 19 C 0.492 3.508 20 O -0.487 6.487 21 C -0.015 4.015 22 C -0.092 4.092 23 H 0.078 0.922 24 C -0.143 4.143 25 C -0.109 4.109 26 C -0.057 4.057 27 H 0.031 0.969 28 H 0.036 0.964 29 H 0.076 0.924 30 H 0.033 0.967 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.076 0.924 34 H 0.267 0.733 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.053 0.947 42 H 0.073 0.927 43 H 0.063 0.937 44 H 0.111 0.889 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.643 -9.672 -0.856 10.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.301 6.301 3 C -0.028 4.028 4 C 0.006 3.994 5 N -0.293 5.293 6 C -0.420 4.420 7 H 0.097 0.903 8 C -0.142 4.142 9 N -0.515 5.515 10 Si 0.682 3.318 11 H -0.187 1.187 12 H -0.225 1.225 13 H -0.201 1.201 14 C 0.124 3.876 15 N -0.257 5.257 16 C 0.032 3.968 17 C -0.358 4.358 18 S 0.183 5.817 19 C 0.173 3.827 20 O -0.368 6.368 21 C -0.054 4.054 22 C -0.112 4.112 23 H 0.096 0.904 24 C -0.200 4.200 25 C -0.147 4.147 26 C -0.096 4.096 27 H 0.049 0.951 28 H 0.054 0.946 29 H 0.094 0.906 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.108 0.892 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.091 0.909 43 H 0.082 0.918 44 H 0.129 0.871 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.992 -9.860 0.711 10.328 hybrid contribution -0.292 1.048 -0.056 1.089 sum 2.700 -8.812 0.655 9.240 Atomic orbital electron populations 1.22622 0.82786 1.01661 0.99214 1.87897 1.18152 1.28782 1.95232 1.23209 0.96716 0.83937 0.98944 1.21559 0.90230 0.97722 0.89924 1.44543 1.72720 1.00344 1.11732 1.18666 1.22806 1.12913 0.87612 0.90345 1.25680 0.96528 0.96086 0.95921 1.69905 1.36145 1.09406 1.36074 0.87394 0.82924 0.78078 0.83420 1.18699 1.22456 1.20108 1.22035 0.80756 0.85232 0.99583 1.48214 1.15320 1.57001 1.05180 1.20281 0.86964 0.95942 0.93650 1.23248 0.99384 1.20069 0.93105 1.84463 1.13059 1.75859 1.08361 1.21309 0.92954 0.83241 0.85187 1.90884 1.51262 1.56397 1.38306 1.19850 0.91699 1.00421 0.93479 1.21266 0.95026 1.01181 0.93735 0.90377 1.21794 0.97811 1.00860 0.99582 1.21600 0.93502 1.00033 0.99528 1.20805 0.99110 1.04047 0.85673 0.95054 0.94559 0.90554 0.94849 0.92761 0.92817 0.90593 0.92267 0.89188 0.89814 0.91131 0.90961 0.92690 0.92441 0.92767 0.90859 0.91788 0.87096 0.90095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.38 -7.18 8.98 -35.23 -0.32 -7.50 16 3 C 0.05 0.98 6.31 37.16 0.23 1.21 16 4 C 0.13 2.92 4.85 -4.04 -0.02 2.90 16 5 N -0.57 -12.85 2.00 -176.95 -0.35 -13.20 16 6 C -0.29 -7.20 8.52 -15.06 -0.13 -7.33 16 7 H 0.08 2.08 8.06 -52.48 -0.42 1.66 16 8 C 0.06 1.64 5.14 -17.43 -0.09 1.55 16 9 N -0.88 -24.34 13.97 55.49 0.78 -23.57 16 10 Si 0.85 21.23 26.62 -169.99 -4.52 16.71 16 11 H -0.26 -6.60 7.11 56.52 0.40 -6.19 16 12 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 13 H -0.27 -6.89 5.87 56.52 0.33 -6.56 16 14 C 0.33 6.72 5.54 -63.75 -0.35 6.36 16 15 N -0.53 -10.72 2.86 -119.75 -0.34 -11.06 16 16 C 0.14 2.60 6.58 -81.03 -0.53 2.07 16 17 C -0.24 -4.07 6.41 -36.20 -0.23 -4.31 16 18 S -0.06 -1.13 22.96 -107.50 -2.47 -3.60 16 19 C 0.49 10.52 8.26 53.66 0.44 10.96 16 20 O -0.49 -11.44 16.38 5.08 0.08 -11.35 16 21 C -0.01 -0.20 5.59 -27.84 -0.16 -0.36 16 22 C -0.09 -1.15 2.77 -90.32 -0.25 -1.40 16 23 H 0.08 1.13 8.12 -51.93 -0.42 0.71 16 24 C -0.14 -1.39 9.17 37.16 0.34 -1.05 16 25 C -0.11 -1.35 5.15 -26.66 -0.14 -1.48 16 26 C -0.06 -0.90 5.19 -27.09 -0.14 -1.04 16 27 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.05 1.26 6.94 -51.93 -0.36 0.90 16 33 H 0.08 1.80 4.84 -51.93 -0.25 1.55 16 34 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.09 1.87 6.35 -51.93 -0.33 1.54 16 36 H 0.08 1.55 6.41 -51.93 -0.33 1.22 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 39 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 43 H 0.06 0.72 8.11 -51.93 -0.42 0.30 16 44 H 0.11 2.10 7.21 -51.93 -0.37 1.72 16 45 H 0.08 1.20 6.91 -51.93 -0.36 0.84 16 LS Contribution 365.10 15.07 5.50 5.50 Total: -1.00 -29.40 365.10 -8.68 -38.08 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -7.13 Total: 0.31 kcal Atomic # 6 Polarization: 9.60 SS G_CDS: 0.09 Total: 9.69 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: 0.08 Total: -47.83 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.23 Total: -18.85 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.52 Total: 16.71 kcal Atomic # 16 Polarization: -1.13 SS G_CDS: -2.47 Total: -3.60 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.40 -8.68 -38.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840153549.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.018 kcal (2) G-P(sol) polarization free energy of solvation -29.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds