Wall clock time and date at job start Tue Mar 31 2020 15:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47272 * 2 1 4 4 C 1.52996 * 109.47497 * 239.99465 * 2 1 3 5 5 O 1.45200 * 109.47200 * 65.00127 * 4 2 1 6 6 C 1.34226 * 117.00561 * 180.02562 * 5 4 2 7 7 O 1.20826 * 119.99411 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00577 * 179.97438 * 6 5 4 9 9 C 1.52998 * 109.47356 * 179.97438 * 8 6 5 10 10 H 1.09003 * 109.46807 * 55.00452 * 9 8 6 11 11 C 1.50703 * 109.47325 * 295.00219 * 9 8 6 12 12 H 1.07999 * 119.99522 * 325.83615 * 11 9 8 13 13 C 1.37868 * 120.00163 * 145.83494 * 11 9 8 14 14 N 1.31517 * 119.99939 * 6.11855 * 13 11 9 15 15 Si 1.86796 * 120.00366 * 186.11538 * 13 11 9 16 16 H 1.48507 * 109.46841 * 60.00052 * 15 13 11 17 17 H 1.48492 * 109.47709 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47166 * 300.00553 * 15 13 11 19 19 C 1.50708 * 109.47029 * 175.00230 * 9 8 6 20 20 C 1.38229 * 119.99998 * 63.46524 * 19 9 8 21 21 C 1.38231 * 119.99912 * 179.80903 * 20 19 9 22 22 C 1.38233 * 120.00024 * 0.40024 * 21 20 19 23 23 C 1.38242 * 119.99856 * 359.85329 * 22 21 20 24 24 C 1.38229 * 120.00177 * 359.95931 * 23 22 21 25 25 C 1.52999 * 109.47019 * 119.99377 * 2 1 3 26 26 C 1.53000 * 109.47455 * 295.00101 * 25 2 1 27 27 F 1.39905 * 109.46868 * 64.99930 * 26 25 2 28 28 F 1.39899 * 109.47303 * 184.99705 * 26 25 2 29 29 H 1.08997 * 109.47037 * 300.00472 * 1 2 3 30 30 H 1.08999 * 109.46855 * 60.00417 * 1 2 3 31 31 H 1.08997 * 109.46747 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47794 * 185.00285 * 4 2 1 33 33 H 1.09000 * 109.47244 * 305.00502 * 4 2 1 34 34 H 1.08998 * 109.47211 * 300.00085 * 8 6 5 35 35 H 1.09004 * 109.46685 * 59.99784 * 8 6 5 36 36 H 0.97004 * 120.00174 * 180.02562 * 14 13 11 37 37 H 1.08004 * 120.00273 * 0.02562 * 20 19 9 38 38 H 1.07998 * 120.00349 * 180.23549 * 21 20 19 39 39 H 1.08000 * 120.00243 * 179.83101 * 22 21 20 40 40 H 1.08003 * 119.99983 * 179.97438 * 23 22 21 41 41 H 1.07999 * 120.00092 * 179.97438 * 24 23 22 42 42 H 1.09007 * 109.46892 * 55.00200 * 25 2 1 43 43 H 1.08998 * 109.47219 * 174.99728 * 25 2 1 44 44 H 1.08996 * 109.47344 * 305.00113 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 8 1.6560 0.0284 -2.4318 6 6 2.0291 -0.4735 -3.6194 7 8 2.6563 -1.5050 -3.6691 8 6 1.6658 0.2494 -4.8908 9 6 2.2072 -0.5280 -6.0921 10 1 1.8410 -1.5541 -6.0558 11 6 3.7137 -0.5305 -6.0515 12 1 4.2448 0.3279 -5.6676 13 6 4.4137 -1.6286 -6.5043 14 7 3.7755 -2.6230 -7.0817 15 14 6.2687 -1.7040 -6.2977 16 1 6.6092 -1.6317 -4.8540 17 1 6.7783 -2.9791 -6.8626 18 1 6.8931 -0.5611 -7.0113 19 6 1.7401 0.1272 -7.3664 20 6 2.1425 1.4145 -7.6694 21 6 1.7173 2.0140 -8.8401 22 6 0.8830 1.3294 -9.7038 23 6 0.4764 0.0440 -9.3982 24 6 0.9047 -0.5570 -8.2294 25 6 2.0400 -0.7211 1.2493 26 6 1.6352 0.0691 2.4953 27 9 0.2411 0.0724 2.6130 28 9 2.1975 -0.5274 3.6290 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1264 -0.7996 -1.2055 33 1 1.6054 -1.7199 -1.2950 34 1 0.5813 0.3278 -4.9670 35 1 2.1022 1.2482 -4.8781 36 1 4.2679 -3.3958 -7.4000 37 1 2.7920 1.9506 -6.9931 38 1 2.0348 3.0184 -9.0787 39 1 0.5486 1.7988 -10.6171 40 1 -0.1758 -0.4908 -10.0728 41 1 0.5866 -1.5611 -7.9905 42 1 1.6053 -1.7197 1.2953 43 1 3.1263 -0.7994 1.2057 44 1 1.9948 1.0944 2.4081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842444264.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:28 Heat of formation + Delta-G solvation = -185.597145 kcal Electronic energy + Delta-G solvation = -27295.620274 eV Core-core repulsion = 23040.934177 eV Total energy + Delta-G solvation = -4254.686097 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.26398 -47.27149 -39.81965 -38.39870 -36.91758 -35.15083 -34.04416 -31.56311 -30.03926 -29.68639 -28.96957 -26.97488 -25.61103 -23.68339 -22.82553 -21.67547 -20.72748 -20.53103 -19.27730 -17.91611 -17.49696 -17.10532 -16.62423 -16.51218 -15.90563 -15.75522 -15.37299 -14.68109 -14.48030 -14.31436 -14.10536 -13.93388 -13.88331 -13.32244 -13.23478 -13.07174 -12.73505 -12.52254 -12.47851 -12.19380 -11.97567 -11.78326 -11.67432 -11.45803 -11.26415 -11.10092 -10.90887 -10.80512 -10.72406 -10.63475 -10.29741 -10.12767 -10.11261 -9.60285 -9.45187 -9.10137 -8.43569 -8.06943 -7.65928 -6.01421 -4.02641 2.26370 2.30482 3.08117 3.13484 3.33910 3.37952 3.40822 3.62105 3.96603 4.24313 4.26661 4.45181 4.71467 4.72198 4.79353 4.98323 5.23339 5.29281 5.34665 5.47464 5.57805 5.64382 5.66013 5.70152 5.77446 5.81636 5.85590 6.02610 6.06192 6.09375 6.22695 6.24820 6.38340 6.47551 6.68637 6.86284 6.97191 7.13159 7.28760 7.37620 7.47611 7.77568 7.89899 7.98326 8.28050 8.67032 8.97528 9.60438 11.08436 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.013702 B = 0.002861 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.031084 B = 9783.161347 C =11232.877556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.088 4.088 3 H 0.087 0.913 4 C 0.073 3.927 5 O -0.372 6.372 6 C 0.456 3.544 7 O -0.467 6.467 8 C -0.094 4.094 9 C 0.077 3.923 10 H 0.073 0.927 11 C -0.502 4.502 12 H 0.052 0.948 13 C 0.080 3.920 14 N -0.879 5.879 15 Si 0.887 3.113 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.278 1.278 19 C -0.022 4.022 20 C -0.115 4.115 21 C -0.131 4.131 22 C -0.154 4.154 23 C -0.128 4.128 24 C -0.117 4.117 25 C -0.168 4.168 26 C 0.265 3.735 27 F -0.200 7.200 28 F -0.208 7.208 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.261 0.739 37 H 0.114 0.886 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.114 0.886 42 H 0.092 0.908 43 H 0.099 0.901 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.645 7.280 11.966 15.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.107 4.107 3 H 0.105 0.895 4 C -0.002 4.002 5 O -0.291 6.291 6 C 0.297 3.703 7 O -0.349 6.349 8 C -0.132 4.132 9 C 0.058 3.942 10 H 0.092 0.908 11 C -0.539 4.539 12 H 0.070 0.930 13 C -0.124 4.124 14 N -0.516 5.516 15 Si 0.715 3.285 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.204 1.204 19 C -0.023 4.023 20 C -0.133 4.133 21 C -0.149 4.149 22 C -0.172 4.172 23 C -0.146 4.146 24 C -0.136 4.136 25 C -0.206 4.206 26 C 0.211 3.789 27 F -0.181 7.181 28 F -0.190 7.190 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.071 0.929 37 H 0.132 0.868 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.132 0.868 42 H 0.111 0.889 43 H 0.117 0.883 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.422 6.715 11.917 15.111 hybrid contribution 1.283 -0.372 0.052 1.337 sum -5.139 6.342 11.969 14.488 Atomic orbital electron populations 1.22199 0.93631 1.02797 1.03636 1.21039 0.97729 1.00314 0.91597 0.89495 1.22783 0.99974 0.94858 0.82538 1.86490 1.73773 1.53578 1.15236 1.23988 0.77048 0.84908 0.84368 1.90723 1.34453 1.23068 1.86687 1.21615 1.01073 1.00424 0.90115 1.17905 0.96354 0.95695 0.84256 0.90842 1.20682 0.89378 1.01543 1.42323 0.92972 1.24812 0.97999 0.95442 0.94105 1.69899 1.35739 1.07864 1.38086 0.86740 0.86071 0.77239 0.78411 1.20299 1.21322 1.20361 1.20615 0.90802 0.92429 0.98421 1.20953 0.99720 0.95734 0.96852 1.20977 0.99203 0.99307 0.95440 1.20813 1.01116 0.95659 0.99607 1.20985 1.00912 0.95340 0.97360 1.21079 0.98216 0.99573 0.94698 1.22659 1.04100 1.01195 0.92633 1.21907 0.74761 0.98834 0.83373 1.92913 1.31449 1.97706 1.96080 1.92989 1.84879 1.86483 1.54605 0.90603 0.91494 0.92617 0.91448 0.91486 0.90423 0.89372 0.92925 0.86807 0.87585 0.87743 0.87573 0.86786 0.88936 0.88266 0.87082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.64 8.54 37.16 0.32 -1.32 16 2 C -0.09 -0.86 2.63 -90.62 -0.24 -1.09 16 3 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 4 C 0.07 0.99 4.84 37.16 0.18 1.17 16 5 O -0.37 -6.10 9.76 -39.25 -0.38 -6.48 16 6 C 0.46 9.10 7.71 36.00 0.28 9.38 16 7 O -0.47 -11.18 14.73 -18.75 -0.28 -11.46 16 8 C -0.09 -1.81 5.06 -27.89 -0.14 -1.95 16 9 C 0.08 1.78 1.67 -92.92 -0.16 1.62 16 10 H 0.07 1.95 6.98 -51.93 -0.36 1.59 16 11 C -0.50 -13.12 6.37 -34.44 -0.22 -13.34 16 12 H 0.05 1.35 7.82 -52.49 -0.41 0.94 16 13 C 0.08 2.21 5.45 -17.82 -0.10 2.11 16 14 N -0.88 -25.24 12.87 55.43 0.71 -24.52 16 15 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 C -0.02 -0.48 4.77 -104.62 -0.50 -0.98 16 20 C -0.11 -2.26 8.86 -39.59 -0.35 -2.61 16 21 C -0.13 -2.30 10.05 -39.59 -0.40 -2.70 16 22 C -0.15 -2.62 10.05 -39.58 -0.40 -3.02 16 23 C -0.13 -2.31 10.05 -39.58 -0.40 -2.71 16 24 C -0.12 -2.43 9.67 -39.58 -0.38 -2.81 16 25 C -0.17 -1.34 5.02 -26.73 -0.13 -1.48 16 26 C 0.26 2.04 5.25 37.16 0.20 2.23 16 27 F -0.20 -1.89 14.15 2.25 0.03 -1.86 16 28 F -0.21 -2.01 17.34 2.25 0.04 -1.97 16 29 H 0.08 0.68 5.43 -51.93 -0.28 0.40 16 30 H 0.07 0.72 7.82 -51.93 -0.41 0.32 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.93 8.13 -51.93 -0.42 0.51 16 33 H 0.07 0.93 8.13 -51.93 -0.42 0.51 16 34 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.09 1.56 7.78 -51.93 -0.40 1.16 16 36 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 37 H 0.11 2.15 7.76 -52.48 -0.41 1.75 16 38 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 39 H 0.10 1.48 8.06 -52.49 -0.42 1.06 16 40 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 41 H 0.11 2.36 7.95 -52.49 -0.42 1.95 16 42 H 0.09 0.77 8.14 -51.92 -0.42 0.34 16 43 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 374.85 15.07 5.65 5.65 Total: -1.00 -30.99 374.85 -8.16 -39.15 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -6.47 Total: 2.30 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: -2.44 Total: -17.49 kcal Atomic # 7 Polarization: -25.24 SS G_CDS: 0.71 Total: -24.52 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.66 Total: -17.94 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.07 Total: -3.82 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.99 -8.16 -39.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842444264.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.445 kcal (2) G-P(sol) polarization free energy of solvation -30.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds