Wall clock time and date at job start Tue Mar 31 2020 15:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00302 * 2 1 4 4 H 1.09005 * 109.46474 * 359.97438 * 3 2 1 5 5 C 1.52995 * 109.47451 * 119.99804 * 3 2 1 6 6 O 1.42900 * 109.47001 * 239.99889 * 3 2 1 7 7 N 1.41597 * 114.00093 * 154.99077 * 6 3 2 8 8 C 1.29438 * 120.00057 * 179.97438 * 7 6 3 9 9 C 1.47427 * 120.00026 * 180.02562 * 8 7 6 10 10 C 1.36763 * 126.69430 * 179.69378 * 9 8 7 11 11 N 1.34496 * 108.06282 * 179.89356 * 10 9 8 12 12 C 1.46505 * 125.23946 * 180.12269 * 11 10 9 13 13 C 1.50702 * 109.47315 * 125.26597 * 12 11 10 14 14 H 1.08005 * 119.99496 * 359.97438 * 13 12 11 15 15 C 1.37872 * 119.99858 * 180.02562 * 13 12 11 16 16 N 1.31509 * 120.00277 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99657 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47061 * 359.97438 * 17 15 13 19 19 H 1.48506 * 109.46713 * 119.99929 * 17 15 13 20 20 H 1.48493 * 109.47012 * 239.99530 * 17 15 13 21 21 N 1.39816 * 109.52487 * 0.37429 * 11 10 9 22 22 C 1.31516 * 108.82066 * 359.76510 * 21 11 10 23 23 C 1.48231 * 126.51126 * 180.02562 * 22 21 11 24 24 C 1.39833 * 120.91047 * 144.69576 * 23 22 21 25 25 C 1.37951 * 119.01102 * 179.75369 * 24 23 22 26 26 N 1.31935 * 120.88913 * 0.53507 * 25 24 23 27 27 C 1.31942 * 122.01690 * 359.73661 * 26 25 24 28 28 C 1.37950 * 120.88571 * 359.97438 * 27 26 25 29 29 H 1.08002 * 120.00352 * 180.02562 * 1 2 3 30 30 H 1.08005 * 119.99880 * 359.72812 * 1 2 3 31 31 H 1.07998 * 120.00195 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.47065 * 179.97438 * 5 3 2 33 33 H 1.08997 * 109.46864 * 300.00066 * 5 3 2 34 34 H 1.08999 * 109.47043 * 59.99814 * 5 3 2 35 35 H 1.08003 * 120.00171 * 0.02562 * 8 7 6 36 36 H 1.08002 * 125.96798 * 0.02795 * 10 9 8 37 37 H 1.08999 * 109.46863 * 245.26821 * 12 11 10 38 38 H 1.08999 * 109.46727 * 5.26175 * 12 11 10 39 39 H 0.97003 * 120.00485 * 180.02562 * 16 15 13 40 40 H 1.07995 * 120.48875 * 0.02562 * 24 23 22 41 41 H 1.08005 * 119.55563 * 180.25355 * 25 24 23 42 42 H 1.08001 * 119.55489 * 179.97438 * 27 26 25 43 43 H 1.08000 * 120.49127 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3551 2.1336 -0.0005 5 6 2.9431 1.3862 1.2492 6 8 2.8851 1.3807 -1.1668 7 7 3.1896 2.7028 -1.5721 8 6 3.9273 2.9061 -2.6161 9 6 4.2448 4.2826 -3.0378 10 6 5.0109 4.6532 -4.1083 11 7 5.0521 5.9970 -4.1463 12 6 5.7691 6.7928 -5.1459 13 6 4.8157 7.7645 -5.7924 14 1 3.7793 7.7867 -5.4893 15 6 5.2663 8.6243 -6.7715 16 7 6.5282 8.5968 -7.1408 17 14 4.0844 9.8283 -7.5733 18 1 2.7313 9.6596 -6.9852 19 1 4.5572 11.2164 -7.3389 20 1 4.0252 9.5655 -9.0336 21 7 4.3103 6.5176 -3.0817 22 6 3.8062 5.5203 -2.3881 23 6 2.9555 5.6282 -1.1790 24 6 1.9256 4.7126 -0.9413 25 6 1.1612 4.8467 0.1992 26 7 1.3847 5.8275 1.0529 27 6 2.3421 6.7153 0.8634 28 6 3.1571 6.6516 -0.2478 29 1 -0.5401 -0.9353 0.0004 30 1 -0.5400 0.9354 0.0044 31 1 1.8500 -0.9353 0.0004 32 1 3.4885 2.3300 1.2489 33 1 2.3164 1.3285 2.1391 34 1 3.6514 0.5577 1.2493 35 1 4.3103 2.0672 -3.1783 36 1 5.4960 3.9837 -4.8032 37 1 6.5759 7.3429 -4.6617 38 1 6.1853 6.1317 -5.9061 39 1 6.8454 9.2020 -7.8294 40 1 1.7345 3.9098 -1.6380 41 1 0.3662 4.1420 0.3936 42 1 2.4898 7.5024 1.5880 43 1 3.9392 7.3814 -0.3964 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844625621.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:52 Heat of formation + Delta-G solvation = 150.460343 kcal Electronic energy + Delta-G solvation = -26622.040555 eV Core-core repulsion = 22864.908942 eV Total energy + Delta-G solvation = -3757.131613 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.66730 -39.53998 -37.97887 -35.38943 -34.12437 -33.02064 -32.76096 -31.03694 -30.87328 -30.05585 -29.23915 -27.10284 -24.30343 -23.81073 -23.22707 -22.71068 -21.73787 -20.24991 -19.96547 -19.20879 -17.38153 -16.91357 -16.73773 -15.92879 -15.77036 -15.58235 -15.47267 -14.77994 -14.47567 -14.40915 -14.00197 -13.90455 -13.71014 -13.58561 -13.43165 -13.06171 -12.51567 -12.43692 -12.33616 -12.16939 -11.95274 -11.72478 -11.36040 -11.11752 -11.01936 -10.97825 -10.42912 -10.31768 -10.17973 -9.98058 -9.85485 -9.66130 -9.42734 -9.24641 -8.80842 -8.74427 -8.53234 -7.66148 -6.38393 -4.44463 1.13475 1.39961 1.70396 1.84309 2.68229 2.91473 3.15124 3.20745 3.23643 3.31561 3.40679 4.13144 4.20822 4.53272 4.60799 4.64495 4.84823 4.90569 4.99071 5.04975 5.09807 5.19145 5.24369 5.34359 5.36704 5.42446 5.52650 5.61049 5.84615 5.86493 5.88720 5.89395 6.03264 6.05593 6.11733 6.29722 6.38962 6.51301 6.58142 6.68687 6.81014 6.90112 6.98349 7.46505 7.64661 7.67750 7.75332 8.14918 8.21972 8.63180 9.22665 10.70515 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015593 B = 0.003041 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.293520 B = 9205.330429 C =10128.004357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.150 4.150 3 C 0.129 3.871 4 H 0.075 0.925 5 C -0.167 4.167 6 O -0.247 6.247 7 N -0.354 5.354 8 C 0.204 3.796 9 C -0.235 4.235 10 C 0.103 3.897 11 N -0.313 5.313 12 C 0.251 3.749 13 C -0.534 4.534 14 H 0.071 0.929 15 C 0.065 3.935 16 N -0.893 5.893 17 Si 0.908 3.092 18 H -0.270 1.270 19 H -0.280 1.280 20 H -0.281 1.281 21 N -0.250 5.250 22 C 0.107 3.893 23 C 0.042 3.958 24 C -0.112 4.112 25 C 0.080 3.920 26 N -0.486 5.486 27 C 0.084 3.916 28 C -0.145 4.145 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.113 0.887 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.119 0.881 36 H 0.181 0.819 37 H 0.051 0.949 38 H 0.061 0.939 39 H 0.269 0.731 40 H 0.151 0.849 41 H 0.148 0.852 42 H 0.153 0.847 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.669 -13.812 12.239 19.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.169 4.169 3 C 0.072 3.928 4 H 0.093 0.907 5 C -0.225 4.225 6 O -0.259 6.259 7 N -0.103 5.103 8 C -0.004 4.004 9 C -0.250 4.250 10 C -0.051 4.051 11 N -0.091 5.091 12 C 0.135 3.865 13 C -0.572 4.572 14 H 0.089 0.911 15 C -0.138 4.138 16 N -0.530 5.530 17 Si 0.735 3.265 18 H -0.194 1.194 19 H -0.206 1.206 20 H -0.207 1.207 21 N -0.071 5.071 22 C -0.061 4.061 23 C 0.032 3.968 24 C -0.133 4.133 25 C -0.077 4.077 26 N -0.195 5.195 27 C -0.073 4.073 28 C -0.166 4.166 29 H 0.122 0.878 30 H 0.118 0.882 31 H 0.131 0.869 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.137 0.863 36 H 0.198 0.802 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.168 0.832 41 H 0.165 0.835 42 H 0.170 0.830 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.288 -12.122 13.243 19.376 hybrid contribution 0.505 -0.804 -1.795 2.030 sum -6.784 -12.926 11.448 18.551 Atomic orbital electron populations 1.23937 0.95610 1.02324 0.99087 1.22817 0.95652 0.97812 1.00663 1.20978 0.91719 0.95389 0.84758 0.90689 1.22223 1.00327 1.02714 0.97232 1.89824 1.69954 1.20668 1.45417 1.77100 1.17254 0.99612 1.16371 1.23359 0.90797 0.94538 0.91716 1.19057 1.13522 0.90062 1.02352 1.22545 0.98115 0.86881 0.97530 1.49339 1.35108 1.03986 1.20643 1.19949 0.91937 0.91150 0.83505 1.21231 0.96387 1.18994 1.20580 0.91096 1.24926 0.95586 0.97117 0.96215 1.69910 1.14245 1.38236 1.30658 0.86260 0.80926 0.80437 0.78879 1.19447 1.20551 1.20657 1.77529 1.09791 1.21079 0.98708 1.21714 0.98701 0.90233 0.95430 1.17990 0.93278 0.94532 0.91004 1.22498 0.93881 0.98017 0.98947 1.22458 0.98618 0.95766 0.90832 1.67539 1.18074 1.03263 1.30671 1.22521 0.91497 0.97143 0.96135 1.22254 1.01134 0.98445 0.94745 0.87848 0.88215 0.86862 0.91830 0.91741 0.92298 0.86327 0.80158 0.93105 0.92150 0.92180 0.83220 0.83507 0.82975 0.84596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 14.32 29.02 0.42 -0.93 16 2 C -0.15 -1.39 9.15 -36.02 -0.33 -1.72 16 3 C 0.13 1.44 3.34 -27.88 -0.09 1.35 16 4 H 0.08 0.84 6.38 -51.93 -0.33 0.50 16 5 C -0.17 -1.78 9.54 37.16 0.35 -1.42 16 6 O -0.25 -3.38 10.98 -11.47 -0.13 -3.51 16 7 N -0.35 -5.08 6.26 32.10 0.20 -4.88 16 8 C 0.20 2.84 11.06 -14.82 -0.16 2.68 16 9 C -0.24 -3.81 6.24 -103.36 -0.64 -4.46 16 10 C 0.10 1.68 11.34 -16.92 -0.19 1.49 16 11 N -0.31 -6.39 3.63 -62.27 -0.23 -6.62 16 12 C 0.25 5.77 6.22 -5.19 -0.03 5.74 16 13 C -0.53 -13.89 9.21 -34.44 -0.32 -14.21 16 14 H 0.07 1.93 7.81 -52.48 -0.41 1.52 16 15 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -24.00 13.29 55.43 0.74 -23.26 16 17 Si 0.91 20.54 29.54 -169.99 -5.02 15.52 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 21 N -0.25 -5.28 12.32 34.56 0.43 -4.85 16 22 C 0.11 1.97 6.98 -80.57 -0.56 1.40 16 23 C 0.04 0.70 5.73 -104.60 -0.60 0.10 16 24 C -0.11 -1.65 7.34 -39.09 -0.29 -1.94 16 25 C 0.08 1.07 10.57 -17.61 -0.19 0.89 16 26 N -0.49 -6.99 10.35 -13.35 -0.14 -7.13 16 27 C 0.08 1.15 11.17 -17.61 -0.20 0.95 16 28 C -0.14 -2.20 9.88 -39.09 -0.39 -2.59 16 29 H 0.10 0.64 8.06 -52.49 -0.42 0.22 16 30 H 0.10 0.73 7.83 -52.48 -0.41 0.32 16 31 H 0.11 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 36 H 0.18 2.16 8.06 -52.49 -0.42 1.73 16 37 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.06 1.34 8.05 -51.93 -0.42 0.92 16 39 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 40 H 0.15 2.21 5.63 -52.49 -0.30 1.92 16 41 H 0.15 1.56 7.71 -52.48 -0.40 1.16 16 42 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 43 H 0.14 2.01 8.06 -52.49 -0.42 1.59 16 LS Contribution 377.86 15.07 5.69 5.69 Total: -1.00 -29.62 377.86 -7.40 -37.02 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -5.63 Total: 3.08 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -3.32 Total: -11.07 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: 1.00 Total: -46.74 kcal Atomic # 8 Polarization: -3.38 SS G_CDS: -0.13 Total: -3.51 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.62 -7.40 -37.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844625621.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.483 kcal (2) G-P(sol) polarization free energy of solvation -29.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds