Wall clock time and date at job start Tue Mar 31 2020 15:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00302 * 2 1 4 4 H 1.09005 * 109.46474 * 359.97438 * 3 2 1 5 5 C 1.52995 * 109.47451 * 119.99804 * 3 2 1 6 6 O 1.42900 * 109.47001 * 239.99889 * 3 2 1 7 7 N 1.41597 * 114.00093 * 154.99077 * 6 3 2 8 8 C 1.29438 * 120.00057 * 179.97438 * 7 6 3 9 9 C 1.47427 * 120.00026 * 180.02562 * 8 7 6 10 10 C 1.36763 * 126.69430 * 179.69378 * 9 8 7 11 11 N 1.34496 * 108.06282 * 179.89356 * 10 9 8 12 12 C 1.46505 * 125.23946 * 180.12269 * 11 10 9 13 13 C 1.50702 * 109.47315 * 125.26597 * 12 11 10 14 14 H 1.08005 * 119.99496 * 359.97438 * 13 12 11 15 15 C 1.37872 * 119.99858 * 180.02562 * 13 12 11 16 16 N 1.31509 * 120.00277 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99657 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47061 * 359.97438 * 17 15 13 19 19 H 1.48506 * 109.46713 * 119.99929 * 17 15 13 20 20 H 1.48493 * 109.47012 * 239.99530 * 17 15 13 21 21 N 1.39816 * 109.52487 * 0.37429 * 11 10 9 22 22 C 1.31516 * 108.82066 * 359.76510 * 21 11 10 23 23 C 1.48231 * 126.51126 * 180.02562 * 22 21 11 24 24 C 1.39833 * 120.91047 * 144.69576 * 23 22 21 25 25 C 1.37951 * 119.01102 * 179.75369 * 24 23 22 26 26 N 1.31935 * 120.88913 * 0.53507 * 25 24 23 27 27 C 1.31942 * 122.01690 * 359.73661 * 26 25 24 28 28 C 1.37950 * 120.88571 * 359.97438 * 27 26 25 29 29 H 1.08002 * 120.00352 * 180.02562 * 1 2 3 30 30 H 1.08005 * 119.99880 * 359.72812 * 1 2 3 31 31 H 1.07998 * 120.00195 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.47065 * 179.97438 * 5 3 2 33 33 H 1.08997 * 109.46864 * 300.00066 * 5 3 2 34 34 H 1.08999 * 109.47043 * 59.99814 * 5 3 2 35 35 H 1.08003 * 120.00171 * 0.02562 * 8 7 6 36 36 H 1.08002 * 125.96798 * 0.02795 * 10 9 8 37 37 H 1.08999 * 109.46863 * 245.26821 * 12 11 10 38 38 H 1.08999 * 109.46727 * 5.26175 * 12 11 10 39 39 H 0.97003 * 120.00485 * 180.02562 * 16 15 13 40 40 H 1.07995 * 120.48875 * 0.02562 * 24 23 22 41 41 H 1.08005 * 119.55563 * 180.25355 * 25 24 23 42 42 H 1.08001 * 119.55489 * 179.97438 * 27 26 25 43 43 H 1.08000 * 120.49127 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3551 2.1336 -0.0005 5 6 2.9431 1.3862 1.2492 6 8 2.8851 1.3807 -1.1668 7 7 3.1896 2.7028 -1.5721 8 6 3.9273 2.9061 -2.6161 9 6 4.2448 4.2826 -3.0378 10 6 5.0109 4.6532 -4.1083 11 7 5.0521 5.9970 -4.1463 12 6 5.7691 6.7928 -5.1459 13 6 4.8157 7.7645 -5.7924 14 1 3.7793 7.7867 -5.4893 15 6 5.2663 8.6243 -6.7715 16 7 6.5282 8.5968 -7.1408 17 14 4.0844 9.8283 -7.5733 18 1 2.7313 9.6596 -6.9852 19 1 4.5572 11.2164 -7.3389 20 1 4.0252 9.5655 -9.0336 21 7 4.3103 6.5176 -3.0817 22 6 3.8062 5.5203 -2.3881 23 6 2.9555 5.6282 -1.1790 24 6 1.9256 4.7126 -0.9413 25 6 1.1612 4.8467 0.1992 26 7 1.3847 5.8275 1.0529 27 6 2.3421 6.7153 0.8634 28 6 3.1571 6.6516 -0.2478 29 1 -0.5401 -0.9353 0.0004 30 1 -0.5400 0.9354 0.0044 31 1 1.8500 -0.9353 0.0004 32 1 3.4885 2.3300 1.2489 33 1 2.3164 1.3285 2.1391 34 1 3.6514 0.5577 1.2493 35 1 4.3103 2.0672 -3.1783 36 1 5.4960 3.9837 -4.8032 37 1 6.5759 7.3429 -4.6617 38 1 6.1853 6.1317 -5.9061 39 1 6.8454 9.2020 -7.8294 40 1 1.7345 3.9098 -1.6380 41 1 0.3662 4.1420 0.3936 42 1 2.4898 7.5024 1.5880 43 1 3.9392 7.3814 -0.3964 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844625621.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:51 Heat of formation + Delta-G solvation = 135.034760 kcal Electronic energy + Delta-G solvation = -26622.709458 eV Core-core repulsion = 22864.908942 eV Total energy + Delta-G solvation = -3757.800517 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.03102 -40.71418 -38.93377 -36.47799 -35.63672 -34.52657 -33.80734 -32.43954 -32.09797 -31.12348 -30.34847 -28.75307 -25.80767 -24.95888 -24.37866 -23.86533 -22.99698 -21.46735 -20.81045 -20.47885 -18.68141 -18.46360 -18.06858 -17.17417 -16.98620 -16.69153 -16.64501 -16.22279 -15.87912 -15.67835 -15.07355 -14.88781 -14.75217 -14.66913 -14.54051 -14.37060 -14.19408 -13.83386 -13.54530 -13.11897 -13.09942 -12.94786 -12.79530 -12.73177 -12.38899 -12.30645 -11.81886 -11.79962 -11.70884 -11.20707 -10.98734 -10.75120 -10.70174 -10.44124 -10.38656 -10.01167 -9.78876 -9.00030 -8.36454 -6.49453 -0.08301 0.28150 0.50807 1.13181 1.32327 1.35385 1.39234 1.49842 1.66279 2.07373 2.18807 2.33027 2.96499 2.98335 3.31865 3.59355 3.63360 3.89557 3.99707 4.07622 4.11402 4.19639 4.22811 4.26402 4.33037 4.50073 4.51076 4.62384 4.71441 4.83325 4.87624 4.88195 4.92506 4.95471 5.04958 5.09812 5.20500 5.38049 5.48364 5.53832 5.59469 5.67239 5.77940 5.79203 5.82816 6.08290 6.59349 6.67307 6.81634 7.03134 7.20838 8.71380 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015593 B = 0.003041 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.293520 B = 9205.330429 C =10128.004357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.169 4.169 3 C 0.124 3.876 4 H 0.075 0.925 5 C -0.162 4.162 6 O -0.254 6.254 7 N -0.360 5.360 8 C 0.200 3.800 9 C -0.233 4.233 10 C 0.111 3.889 11 N -0.339 5.339 12 C 0.267 3.733 13 C -0.548 4.548 14 H 0.051 0.949 15 C 0.024 3.976 16 N -0.917 5.917 17 Si 0.965 3.035 18 H -0.277 1.277 19 H -0.275 1.275 20 H -0.269 1.269 21 N -0.301 5.301 22 C 0.104 3.896 23 C 0.018 3.982 24 C -0.110 4.110 25 C 0.086 3.914 26 N -0.493 5.493 27 C 0.088 3.912 28 C -0.156 4.156 29 H 0.123 0.877 30 H 0.105 0.895 31 H 0.119 0.881 32 H 0.041 0.959 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.150 0.850 36 H 0.224 0.776 37 H 0.026 0.974 38 H 0.069 0.931 39 H 0.273 0.727 40 H 0.150 0.850 41 H 0.178 0.822 42 H 0.182 0.818 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.242 -15.546 12.893 21.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.188 4.188 3 C 0.067 3.933 4 H 0.093 0.907 5 C -0.220 4.220 6 O -0.267 6.267 7 N -0.109 5.109 8 C -0.008 4.008 9 C -0.247 4.247 10 C -0.041 4.041 11 N -0.117 5.117 12 C 0.149 3.851 13 C -0.586 4.586 14 H 0.069 0.931 15 C -0.177 4.177 16 N -0.556 5.556 17 Si 0.790 3.210 18 H -0.202 1.202 19 H -0.201 1.201 20 H -0.194 1.194 21 N -0.122 5.122 22 C -0.064 4.064 23 C 0.007 3.993 24 C -0.132 4.132 25 C -0.071 4.071 26 N -0.203 5.203 27 C -0.068 4.068 28 C -0.178 4.178 29 H 0.141 0.859 30 H 0.123 0.877 31 H 0.137 0.863 32 H 0.060 0.940 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.167 0.833 36 H 0.240 0.760 37 H 0.044 0.956 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.168 0.832 41 H 0.195 0.805 42 H 0.199 0.801 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.862 -13.867 13.910 21.548 hybrid contribution 0.889 -0.378 -1.838 2.077 sum -7.973 -14.246 12.072 20.304 Atomic orbital electron populations 1.24181 0.95159 1.03533 0.96561 1.22771 0.96121 0.97002 1.02942 1.21189 0.91586 0.96582 0.83981 0.90722 1.22173 1.00407 1.01500 0.97879 1.89817 1.70479 1.19900 1.46496 1.77026 1.16901 1.00602 1.16347 1.23382 0.91152 0.94043 0.92204 1.19290 1.12853 0.90641 1.01890 1.23235 0.97331 0.85639 0.97905 1.49018 1.36560 1.05208 1.20911 1.19492 0.90883 0.90990 0.83767 1.21381 0.96010 1.20177 1.21020 0.93102 1.25625 0.96977 0.98467 0.96664 1.69971 1.15375 1.39026 1.31202 0.85391 0.78615 0.78565 0.78427 1.20163 1.20068 1.19397 1.77438 1.11766 1.22969 0.99991 1.22201 0.97956 0.90766 0.95493 1.18203 0.94193 0.95887 0.90974 1.22505 0.93602 0.97578 0.99482 1.22910 0.98602 0.95719 0.89842 1.67649 1.18194 1.03595 1.30859 1.22940 0.90535 0.97440 0.95890 1.22332 1.01704 0.98311 0.95423 0.85934 0.87709 0.86306 0.94014 0.90125 0.92137 0.83265 0.76004 0.95590 0.91300 0.91788 0.83244 0.80512 0.80118 0.85127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 14.32 67.79 0.97 -1.01 16 2 C -0.17 -2.73 9.15 25.65 0.23 -2.50 16 3 C 0.12 2.54 3.34 29.85 0.10 2.64 16 4 H 0.07 1.51 6.38 -2.38 -0.02 1.49 16 5 C -0.16 -3.20 9.54 71.98 0.69 -2.52 16 6 O -0.25 -6.53 10.98 -38.78 -0.43 -6.95 16 7 N -0.36 -9.89 6.26 -52.36 -0.33 -10.22 16 8 C 0.20 5.28 11.06 87.47 0.97 6.25 16 9 C -0.23 -7.44 6.24 -19.05 -0.12 -7.56 16 10 C 0.11 3.54 11.34 83.94 0.95 4.49 16 11 N -0.34 -14.20 3.63 -350.93 -1.27 -15.48 16 12 C 0.27 12.66 6.22 85.63 0.53 13.19 16 13 C -0.55 -29.34 9.21 25.60 0.24 -29.10 16 14 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 15 C 0.02 1.25 5.46 84.65 0.46 1.71 16 16 N -0.92 -49.80 13.29 21.44 0.28 -49.52 16 17 Si 0.97 42.48 29.54 68.60 2.03 44.50 16 18 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 19 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 20 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 21 N -0.30 -13.23 12.32 -44.57 -0.55 -13.78 16 22 C 0.10 3.91 6.98 44.01 0.31 4.21 16 23 C 0.02 0.59 5.73 -19.85 -0.11 0.47 16 24 C -0.11 -3.16 7.34 22.59 0.17 -3.00 16 25 C 0.09 2.15 10.57 84.61 0.89 3.04 16 26 N -0.49 -13.33 10.35 -196.14 -2.03 -15.36 16 27 C 0.09 2.32 11.17 84.61 0.95 3.27 16 28 C -0.16 -4.82 9.88 22.59 0.22 -4.60 16 29 H 0.12 1.08 8.06 -2.91 -0.02 1.06 16 30 H 0.10 1.21 7.83 -2.91 -0.02 1.19 16 31 H 0.12 1.76 8.06 -2.91 -0.02 1.74 16 32 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 36 H 0.22 4.83 8.06 -2.91 -0.02 4.81 16 37 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.07 3.10 8.05 -2.39 -0.02 3.08 16 39 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 40 H 0.15 4.28 5.63 -2.91 -0.02 4.26 16 41 H 0.18 3.25 7.71 -2.91 -0.02 3.23 16 42 H 0.18 3.56 8.06 -2.91 -0.02 3.53 16 43 H 0.13 4.06 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -65.21 377.86 6.16 -59.05 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 1.01 Total: 18.76 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: 7.44 Total: -11.00 kcal Atomic # 7 Polarization: -100.45 SS G_CDS: -3.90 Total: -104.35 kcal Atomic # 8 Polarization: -6.53 SS G_CDS: -0.43 Total: -6.95 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal Total: -65.21 6.16 -59.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844625621.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.080 kcal (2) G-P(sol) polarization free energy of solvation -65.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds