Wall clock time and date at job start Tue Mar 31 2020 15:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47119 * 2 1 4 4 N 1.46506 * 109.47201 * 120.00042 * 2 1 3 5 5 C 1.34780 * 119.99478 * 275.00330 * 4 2 1 6 6 O 1.21270 * 120.00366 * 359.97438 * 5 4 2 7 7 C 1.50705 * 119.99372 * 179.97438 * 5 4 2 8 8 C 1.50699 * 109.46853 * 180.02562 * 7 5 4 9 9 C 1.37644 * 120.12236 * 264.99853 * 8 7 5 10 10 C 1.38616 * 120.24561 * 179.97438 * 9 8 7 11 11 C 1.38656 * 120.49959 * 0.02562 * 10 9 8 12 12 C 1.37599 * 120.25156 * 0.02562 * 11 10 9 13 13 C 1.40691 * 120.13090 * 84.72672 * 8 7 5 14 14 C 1.41401 * 120.24537 * 359.97438 * 13 8 7 15 15 H 1.08002 * 119.99894 * 329.70635 * 14 13 8 16 16 C 1.39944 * 120.00007 * 149.70400 * 14 13 8 17 17 N 1.30824 * 119.99550 * 162.01683 * 16 14 13 18 18 Si 1.86798 * 120.00108 * 342.01504 * 16 14 13 19 19 H 1.48503 * 109.47033 * 95.40057 * 18 16 14 20 20 H 1.48490 * 109.47452 * 215.40182 * 18 16 14 21 21 H 1.48506 * 109.47108 * 335.40538 * 18 16 14 22 22 C 1.50703 * 109.47307 * 239.99956 * 2 1 3 23 23 N 1.31790 * 119.08150 * 284.72539 * 22 2 1 24 24 C 1.32549 * 121.00751 * 180.27408 * 23 22 2 25 25 C 1.38114 * 119.20066 * 0.02562 * 24 23 22 26 26 C 1.39624 * 118.33405 * 359.97438 * 25 24 23 27 27 N 1.38545 * 120.53183 * 180.02562 * 26 25 24 28 28 N 1.31745 * 119.08377 * 105.00304 * 22 2 1 29 29 H 1.08992 * 109.47407 * 300.00156 * 1 2 3 30 30 H 1.08998 * 109.47030 * 60.00526 * 1 2 3 31 31 H 1.08998 * 109.46970 * 179.97438 * 1 2 3 32 32 H 0.96998 * 119.99890 * 94.99447 * 4 2 1 33 33 H 1.09004 * 109.47106 * 299.99563 * 7 5 4 34 34 H 1.08995 * 109.47355 * 60.00014 * 7 5 4 35 35 H 1.08000 * 119.88020 * 0.02562 * 9 8 7 36 36 H 1.07994 * 119.75156 * 180.02562 * 10 9 8 37 37 H 1.08002 * 119.87470 * 179.97438 * 11 10 9 38 38 H 1.08001 * 120.12403 * 179.97438 * 12 11 10 39 39 H 0.96998 * 119.99314 * 179.97438 * 17 16 14 40 40 H 1.08002 * 120.39949 * 180.02562 * 24 23 22 41 41 H 1.08004 * 120.83401 * 179.97438 * 25 24 23 42 42 H 0.97005 * 119.99795 * 179.97438 * 27 26 25 43 43 H 0.96998 * 120.00245 * 359.97283 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8589 1.1585 2.4115 7 6 2.6488 -0.7288 3.5878 8 6 2.6989 0.2394 4.7415 9 6 3.8714 0.8942 5.0433 10 6 3.9203 1.7857 6.1036 11 6 2.7917 2.0280 6.8719 12 6 1.6092 1.3839 6.5890 13 6 1.5461 0.4818 5.5107 14 6 0.3344 -0.1804 5.2061 15 1 0.1147 -0.4626 4.1870 16 6 -0.5800 -0.4702 6.2251 17 7 -1.8228 -0.7506 5.9283 18 14 -0.0258 -0.4565 8.0089 19 1 -0.3278 0.8670 8.6110 20 1 -0.7452 -1.5172 8.7589 21 1 1.4362 -0.7084 8.0750 22 6 2.0324 -0.7104 -1.2305 23 7 1.9699 -2.0259 -1.2810 24 6 2.4058 -2.6899 -2.3422 25 6 2.9328 -1.9865 -3.4075 26 6 2.9843 -0.5938 -3.3216 27 7 3.5035 0.1569 -4.3639 28 7 2.5268 0.0005 -2.2233 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 2.2490 -1.6318 1.1526 33 1 1.9758 -1.5506 3.8326 34 1 3.6479 -1.1213 3.3987 35 1 4.7564 0.7134 4.4513 36 1 4.8443 2.2955 6.3331 37 1 2.8412 2.7244 7.6960 38 1 0.7315 1.5738 7.1890 39 1 -2.4565 -0.9518 6.6346 40 1 2.3495 -3.7680 -2.3733 41 1 3.2960 -2.5007 -4.2851 42 1 3.5352 1.1241 -4.2962 43 1 3.8352 -0.2845 -5.1614 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854762796.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:01 Heat of formation + Delta-G solvation = 29.720103 kcal Electronic energy + Delta-G solvation = -26761.534881 eV Core-core repulsion = 22999.167578 eV Total energy + Delta-G solvation = -3762.367303 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.21426 -39.21844 -37.59534 -36.17287 -34.82697 -33.49306 -32.94757 -31.88051 -30.75238 -30.22406 -29.65141 -26.79366 -25.10148 -24.63720 -23.97090 -21.90317 -21.25282 -20.18970 -19.37689 -18.34769 -17.87424 -17.24787 -16.35459 -16.13707 -15.70328 -15.54789 -15.41023 -15.15847 -14.63431 -14.28245 -14.22983 -13.75437 -13.52348 -13.47474 -13.08164 -12.65114 -12.56981 -12.11099 -12.00232 -11.86540 -11.78063 -11.35556 -11.27567 -10.96543 -10.80458 -10.71744 -10.63078 -10.19996 -10.16541 -9.61861 -9.46448 -9.39032 -9.11290 -9.03270 -8.71364 -8.63547 -7.50157 -7.40326 -6.84307 -4.37555 0.79156 1.17770 2.64798 2.80892 2.92906 3.19522 3.27519 3.39463 3.41998 3.55411 3.77880 3.90231 4.07049 4.27989 4.61108 4.63224 4.93352 5.09048 5.30261 5.42473 5.45936 5.52462 5.74043 5.84926 5.97293 6.04993 6.07065 6.18618 6.22887 6.29023 6.39859 6.46423 6.61066 6.68775 6.81421 6.81804 6.89453 7.05013 7.30465 7.32129 7.53072 7.76115 7.84297 8.00505 8.07636 8.11990 8.24720 8.46785 8.78793 8.92476 8.95582 10.17884 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.018629 B = 0.003027 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.651862 B = 9247.428405 C =10087.019868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.215 3.785 3 H 0.109 0.891 4 N -0.731 5.731 5 C 0.519 3.481 6 O -0.520 6.520 7 C -0.073 4.073 8 C -0.164 4.164 9 C -0.070 4.070 10 C -0.243 4.243 11 C -0.081 4.081 12 C -0.234 4.234 13 C 0.110 3.890 14 C -0.443 4.443 15 H 0.091 0.909 16 C 0.085 3.915 17 N -0.810 5.810 18 Si 0.909 3.091 19 H -0.272 1.272 20 H -0.293 1.293 21 H -0.244 1.244 22 C 0.366 3.634 23 N -0.550 5.550 24 C 0.180 3.820 25 C -0.300 4.300 26 C 0.439 3.561 27 N -0.838 5.838 28 N -0.569 5.569 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.403 0.597 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.283 0.717 40 H 0.168 0.832 41 H 0.140 0.860 42 H 0.408 0.592 43 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.361 -5.070 -17.960 20.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.108 3.892 3 H 0.127 0.873 4 N -0.387 5.387 5 C 0.307 3.693 6 O -0.394 6.394 7 C -0.113 4.113 8 C -0.166 4.166 9 C -0.088 4.088 10 C -0.262 4.262 11 C -0.099 4.099 12 C -0.253 4.253 13 C 0.107 3.893 14 C -0.471 4.471 15 H 0.108 0.892 16 C -0.134 4.134 17 N -0.434 5.434 18 Si 0.736 3.264 19 H -0.198 1.198 20 H -0.221 1.221 21 H -0.167 1.167 22 C 0.096 3.904 23 N -0.268 5.268 24 C 0.018 3.982 25 C -0.328 4.328 26 C 0.193 3.807 27 N -0.382 5.382 28 N -0.294 5.294 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.238 0.762 33 H 0.120 0.880 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.116 0.884 39 H 0.093 0.907 40 H 0.185 0.815 41 H 0.158 0.842 42 H 0.238 0.762 43 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 7.539 -3.854 -17.093 19.075 hybrid contribution 0.595 -0.656 -0.584 1.061 sum 8.134 -4.510 -17.677 19.975 Atomic orbital electron populations 1.22126 0.93109 1.03063 1.03118 1.19384 0.94668 0.96121 0.79013 0.87299 1.46076 1.69557 1.14297 1.08738 1.21112 0.76850 0.87596 0.83746 1.90685 1.48191 1.16181 1.84332 1.20287 1.01276 0.98954 0.90761 1.19070 0.93657 1.03473 1.00396 1.20432 0.96121 0.95978 0.96252 1.20317 0.97614 1.06599 1.01673 1.20586 0.93482 0.98040 0.97793 1.20991 0.97218 1.03468 1.03608 1.17483 0.91884 0.89893 0.90069 1.19427 0.98476 1.32437 0.96788 0.89154 1.26147 0.93609 0.91686 1.01926 1.69714 1.03046 1.34224 1.36426 0.86358 0.81287 0.77538 0.81233 1.19838 1.22094 1.16687 1.22976 0.87940 0.86650 0.92822 1.68184 1.21717 1.09312 1.27637 1.22935 0.87735 1.00665 0.86914 1.22109 1.12966 0.93664 1.04056 1.18514 0.86720 0.88489 0.86985 1.42184 1.68183 1.10103 1.17703 1.67718 1.18328 1.41480 1.01854 0.90111 0.92208 0.91636 0.76173 0.88012 0.90396 0.89163 0.89102 0.89096 0.88375 0.90682 0.81527 0.84187 0.76189 0.75872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.47 37.16 0.35 -2.05 16 2 C 0.22 3.41 2.97 -69.08 -0.21 3.20 16 3 H 0.11 1.90 7.55 -51.93 -0.39 1.50 16 4 N -0.73 -12.06 5.06 -54.93 -0.28 -12.34 16 5 C 0.52 10.52 7.39 -10.98 -0.08 10.44 16 6 O -0.52 -12.69 15.70 5.57 0.09 -12.60 16 7 C -0.07 -1.44 5.19 -29.03 -0.15 -1.59 16 8 C -0.16 -3.87 4.43 -103.91 -0.46 -4.33 16 9 C -0.07 -1.54 9.66 -39.66 -0.38 -1.93 16 10 C -0.24 -5.37 10.05 -39.29 -0.39 -5.76 16 11 C -0.08 -1.87 10.02 -39.66 -0.40 -2.26 16 12 C -0.23 -5.95 7.17 -38.87 -0.28 -6.23 16 13 C 0.11 2.87 5.10 -106.83 -0.54 2.32 16 14 C -0.44 -12.08 8.55 -37.74 -0.32 -12.40 16 15 H 0.09 2.59 6.99 -52.49 -0.37 2.22 16 16 C 0.08 2.25 5.41 -17.34 -0.09 2.16 16 17 N -0.81 -21.91 13.93 55.55 0.77 -21.13 16 18 Si 0.91 21.25 24.52 -169.99 -4.17 17.08 16 19 H -0.27 -6.27 6.71 56.52 0.38 -5.89 16 20 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.24 -5.80 6.85 56.52 0.39 -5.41 16 22 C 0.37 5.14 6.59 -157.24 -1.04 4.11 16 23 N -0.55 -6.97 9.59 -10.81 -0.10 -7.07 16 24 C 0.18 1.69 11.29 -17.29 -0.20 1.50 16 25 C -0.30 -2.49 10.04 -39.11 -0.39 -2.88 16 26 C 0.44 4.43 7.82 -154.77 -1.21 3.22 16 27 N -0.84 -5.19 9.06 31.24 0.28 -4.90 16 28 N -0.57 -7.56 10.35 -9.96 -0.10 -7.67 16 29 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.40 5.86 8.01 -40.82 -0.33 5.53 16 33 H 0.10 2.00 7.15 -51.93 -0.37 1.63 16 34 H 0.08 1.27 8.05 -51.93 -0.42 0.85 16 35 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 36 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 37 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 38 H 0.10 2.49 4.74 -52.49 -0.25 2.24 16 39 H 0.28 6.97 8.30 -40.82 -0.34 6.63 16 40 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.14 0.69 8.06 -52.48 -0.42 0.27 16 42 H 0.41 2.36 8.95 -40.82 -0.37 1.99 16 43 H 0.41 1.24 8.84 -40.82 -0.36 0.88 16 LS Contribution 363.32 15.07 5.48 5.48 Total: -1.00 -33.53 363.32 -9.23 -42.76 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -5.40 Total: 12.90 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -5.80 Total: -12.49 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: 0.57 Total: -53.12 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: 0.09 Total: -12.60 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.17 Total: 17.08 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.53 -9.23 -42.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854762796.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.481 kcal (2) G-P(sol) polarization free energy of solvation -33.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds