Wall clock time and date at job start Tue Mar 31 2020 15:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47119 * 2 1 4 4 N 1.46506 * 109.47201 * 120.00042 * 2 1 3 5 5 C 1.34780 * 119.99478 * 275.00330 * 4 2 1 6 6 O 1.21270 * 120.00366 * 359.97438 * 5 4 2 7 7 C 1.50705 * 119.99372 * 179.97438 * 5 4 2 8 8 C 1.50699 * 109.46853 * 180.02562 * 7 5 4 9 9 C 1.37644 * 120.12236 * 264.99853 * 8 7 5 10 10 C 1.38616 * 120.24561 * 179.97438 * 9 8 7 11 11 C 1.38656 * 120.49959 * 0.02562 * 10 9 8 12 12 C 1.37599 * 120.25156 * 0.02562 * 11 10 9 13 13 C 1.40691 * 120.13090 * 84.72672 * 8 7 5 14 14 C 1.41401 * 120.24537 * 359.97438 * 13 8 7 15 15 H 1.08002 * 119.99894 * 329.70635 * 14 13 8 16 16 C 1.39944 * 120.00007 * 149.70400 * 14 13 8 17 17 N 1.30824 * 119.99550 * 162.01683 * 16 14 13 18 18 Si 1.86798 * 120.00108 * 342.01504 * 16 14 13 19 19 H 1.48503 * 109.47033 * 95.40057 * 18 16 14 20 20 H 1.48490 * 109.47452 * 215.40182 * 18 16 14 21 21 H 1.48506 * 109.47108 * 335.40538 * 18 16 14 22 22 C 1.50703 * 109.47307 * 239.99956 * 2 1 3 23 23 N 1.31790 * 119.08150 * 284.72539 * 22 2 1 24 24 C 1.32549 * 121.00751 * 180.27408 * 23 22 2 25 25 C 1.38114 * 119.20066 * 0.02562 * 24 23 22 26 26 C 1.39624 * 118.33405 * 359.97438 * 25 24 23 27 27 N 1.38545 * 120.53183 * 180.02562 * 26 25 24 28 28 N 1.31745 * 119.08377 * 105.00304 * 22 2 1 29 29 H 1.08992 * 109.47407 * 300.00156 * 1 2 3 30 30 H 1.08998 * 109.47030 * 60.00526 * 1 2 3 31 31 H 1.08998 * 109.46970 * 179.97438 * 1 2 3 32 32 H 0.96998 * 119.99890 * 94.99447 * 4 2 1 33 33 H 1.09004 * 109.47106 * 299.99563 * 7 5 4 34 34 H 1.08995 * 109.47355 * 60.00014 * 7 5 4 35 35 H 1.08000 * 119.88020 * 0.02562 * 9 8 7 36 36 H 1.07994 * 119.75156 * 180.02562 * 10 9 8 37 37 H 1.08002 * 119.87470 * 179.97438 * 11 10 9 38 38 H 1.08001 * 120.12403 * 179.97438 * 12 11 10 39 39 H 0.96998 * 119.99314 * 179.97438 * 17 16 14 40 40 H 1.08002 * 120.39949 * 180.02562 * 24 23 22 41 41 H 1.08004 * 120.83401 * 179.97438 * 25 24 23 42 42 H 0.97005 * 119.99795 * 179.97438 * 27 26 25 43 43 H 0.96998 * 120.00245 * 359.97283 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8589 1.1585 2.4115 7 6 2.6488 -0.7288 3.5878 8 6 2.6989 0.2394 4.7415 9 6 3.8714 0.8942 5.0433 10 6 3.9203 1.7857 6.1036 11 6 2.7917 2.0280 6.8719 12 6 1.6092 1.3839 6.5890 13 6 1.5461 0.4818 5.5107 14 6 0.3344 -0.1804 5.2061 15 1 0.1147 -0.4626 4.1870 16 6 -0.5800 -0.4702 6.2251 17 7 -1.8228 -0.7506 5.9283 18 14 -0.0258 -0.4565 8.0089 19 1 -0.3278 0.8670 8.6110 20 1 -0.7452 -1.5172 8.7589 21 1 1.4362 -0.7084 8.0750 22 6 2.0324 -0.7104 -1.2305 23 7 1.9699 -2.0259 -1.2810 24 6 2.4058 -2.6899 -2.3422 25 6 2.9328 -1.9865 -3.4075 26 6 2.9843 -0.5938 -3.3216 27 7 3.5035 0.1569 -4.3639 28 7 2.5268 0.0005 -2.2233 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 2.2490 -1.6318 1.1526 33 1 1.9758 -1.5506 3.8326 34 1 3.6479 -1.1213 3.3987 35 1 4.7564 0.7134 4.4513 36 1 4.8443 2.2955 6.3331 37 1 2.8412 2.7244 7.6960 38 1 0.7315 1.5738 7.1890 39 1 -2.4565 -0.9518 6.6346 40 1 2.3495 -3.7680 -2.3733 41 1 3.2960 -2.5007 -4.2851 42 1 3.5352 1.1241 -4.2962 43 1 3.8352 -0.2845 -5.1614 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854762796.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:00 Heat of formation + Delta-G solvation = 5.636575 kcal Electronic energy + Delta-G solvation = -26762.579221 eV Core-core repulsion = 22999.167578 eV Total energy + Delta-G solvation = -3763.411643 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.07984 -40.80536 -39.34203 -37.16769 -35.92149 -35.44577 -33.96112 -33.49306 -32.15902 -31.83867 -30.69498 -28.48705 -26.71920 -25.96928 -24.72530 -23.30586 -22.95155 -21.72336 -21.00856 -19.22805 -19.16052 -18.83581 -17.68148 -17.51976 -16.99196 -16.55379 -16.48538 -16.22784 -16.08692 -15.93233 -15.49619 -15.24967 -15.20508 -14.72786 -14.47705 -14.38044 -13.94313 -13.80666 -13.68995 -13.26523 -13.08309 -12.75314 -12.70951 -12.64393 -12.49504 -12.44129 -11.96342 -11.69214 -11.49978 -11.33939 -11.04791 -10.93850 -10.77790 -10.24352 -10.11124 -9.36540 -9.35153 -9.25286 -8.82226 -6.40171 -0.03408 0.42145 0.82948 0.93897 1.29743 1.42489 1.52182 1.81797 2.07546 2.17424 2.48975 2.68941 2.86997 2.92630 3.49720 3.59321 3.89231 4.04395 4.14787 4.17290 4.31970 4.32854 4.39521 4.45997 4.49994 4.61324 4.63958 4.65447 4.76192 4.86471 4.97364 5.01841 5.11651 5.20187 5.37466 5.41608 5.49146 5.71285 5.90660 5.91853 5.99301 6.09563 6.19845 6.33835 6.49837 6.65337 6.76458 6.85173 6.95085 7.29698 7.41854 8.25634 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.018629 B = 0.003027 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.651862 B = 9247.428405 C =10087.019868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.217 3.783 3 H 0.087 0.913 4 N -0.713 5.713 5 C 0.520 3.480 6 O -0.570 6.570 7 C -0.072 4.072 8 C -0.170 4.170 9 C -0.079 4.079 10 C -0.230 4.230 11 C -0.091 4.091 12 C -0.257 4.257 13 C 0.084 3.916 14 C -0.468 4.468 15 H 0.058 0.942 16 C 0.048 3.952 17 N -0.851 5.851 18 Si 0.963 3.037 19 H -0.269 1.269 20 H -0.278 1.278 21 H -0.250 1.250 22 C 0.350 3.650 23 N -0.568 5.568 24 C 0.167 3.833 25 C -0.281 4.281 26 C 0.422 3.578 27 N -0.820 5.820 28 N -0.597 5.597 29 H 0.045 0.955 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.414 0.586 33 H 0.097 0.903 34 H 0.119 0.881 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.121 0.879 38 H 0.091 0.909 39 H 0.290 0.710 40 H 0.202 0.798 41 H 0.181 0.819 42 H 0.411 0.589 43 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.344 -5.999 -19.236 23.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.110 3.890 3 H 0.105 0.895 4 N -0.368 5.368 5 C 0.308 3.692 6 O -0.448 6.448 7 C -0.112 4.112 8 C -0.172 4.172 9 C -0.097 4.097 10 C -0.249 4.249 11 C -0.109 4.109 12 C -0.276 4.276 13 C 0.081 3.919 14 C -0.498 4.498 15 H 0.076 0.924 16 C -0.166 4.166 17 N -0.478 5.478 18 Si 0.787 3.213 19 H -0.195 1.195 20 H -0.205 1.205 21 H -0.173 1.173 22 C 0.080 3.920 23 N -0.288 5.288 24 C 0.007 3.993 25 C -0.309 4.309 26 C 0.176 3.824 27 N -0.366 5.366 28 N -0.323 5.323 29 H 0.064 0.936 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.252 0.748 33 H 0.115 0.885 34 H 0.137 0.863 35 H 0.143 0.857 36 H 0.146 0.854 37 H 0.139 0.861 38 H 0.109 0.891 39 H 0.101 0.899 40 H 0.219 0.781 41 H 0.198 0.802 42 H 0.241 0.759 43 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 10.549 -4.832 -18.441 21.788 hybrid contribution -0.117 -0.309 -0.409 0.525 sum 10.432 -5.141 -18.850 22.149 Atomic orbital electron populations 1.21994 0.93405 1.02880 1.02129 1.19230 0.94470 0.95393 0.79887 0.89517 1.45871 1.68100 1.14623 1.08186 1.21172 0.76291 0.86986 0.84701 1.90658 1.50657 1.18299 1.85193 1.20329 1.03453 0.97933 0.89470 1.19517 0.93454 1.03659 1.00565 1.20891 0.96754 0.95467 0.96625 1.20857 0.98553 1.05238 1.00287 1.20970 0.92914 0.98140 0.98912 1.21140 0.98242 1.04281 1.03928 1.17725 0.92362 0.90412 0.91354 1.19337 1.00126 1.34624 0.95688 0.92368 1.26777 0.93494 0.91305 1.05039 1.69749 1.03903 1.36436 1.37713 0.85525 0.80411 0.77934 0.77396 1.19468 1.20523 1.17343 1.22315 0.89959 0.87273 0.92475 1.68125 1.22616 1.08595 1.29475 1.23574 0.87205 1.02217 0.86282 1.22516 1.10781 0.92812 1.04753 1.18895 0.86884 0.89783 0.86879 1.42180 1.66858 1.10243 1.17274 1.67588 1.19370 1.42400 1.02919 0.93557 0.90612 0.91300 0.74839 0.88483 0.86313 0.85733 0.85444 0.86085 0.89145 0.89947 0.78091 0.80199 0.75911 0.73866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.80 9.47 71.98 0.68 -4.11 16 2 C 0.22 7.18 2.97 44.24 0.13 7.31 16 3 H 0.09 3.23 7.55 -2.38 -0.02 3.21 16 4 N -0.71 -24.22 5.06 -446.08 -2.26 -26.48 16 5 C 0.52 21.74 7.39 87.66 0.65 22.39 16 6 O -0.57 -29.16 15.70 -3.00 -0.05 -29.21 16 7 C -0.07 -2.86 5.19 29.10 0.15 -2.71 16 8 C -0.17 -7.98 4.43 -19.41 -0.09 -8.06 16 9 C -0.08 -3.32 9.66 22.22 0.21 -3.11 16 10 C -0.23 -9.43 10.05 22.46 0.23 -9.21 16 11 C -0.09 -4.03 10.02 22.22 0.22 -3.81 16 12 C -0.26 -13.10 7.17 22.73 0.16 -12.93 16 13 C 0.08 4.49 5.10 -21.29 -0.11 4.38 16 14 C -0.47 -26.91 8.55 23.46 0.20 -26.71 16 15 H 0.06 3.60 6.99 -2.91 -0.02 3.58 16 16 C 0.05 2.65 5.41 85.26 0.46 3.11 16 17 N -0.85 -48.28 13.93 21.83 0.30 -47.97 16 18 Si 0.96 44.75 24.52 68.60 1.68 46.43 16 19 H -0.27 -12.17 6.71 99.48 0.67 -11.51 16 20 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 21 H -0.25 -11.71 6.85 99.48 0.68 -11.02 16 22 C 0.35 9.81 6.59 138.77 0.91 10.73 16 23 N -0.57 -13.78 9.59 -188.11 -1.80 -15.59 16 24 C 0.17 2.69 11.29 84.56 0.95 3.64 16 25 C -0.28 -3.70 10.04 22.58 0.23 -3.47 16 26 C 0.42 7.61 7.82 133.16 1.04 8.66 16 27 N -0.82 -8.11 9.06 -55.09 -0.50 -8.61 16 28 N -0.60 -15.52 10.35 -185.44 -1.92 -17.44 16 29 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.41 12.09 8.01 -92.71 -0.74 11.35 16 33 H 0.10 3.93 7.15 -2.38 -0.02 3.91 16 34 H 0.12 3.62 8.05 -2.39 -0.02 3.60 16 35 H 0.12 4.32 8.06 -2.91 -0.02 4.30 16 36 H 0.13 4.28 8.06 -2.91 -0.02 4.26 16 37 H 0.12 4.53 8.06 -2.91 -0.02 4.51 16 38 H 0.09 4.65 4.74 -2.91 -0.01 4.64 16 39 H 0.29 14.88 8.30 -92.71 -0.77 14.11 16 40 H 0.20 1.64 8.06 -2.91 -0.02 1.62 16 41 H 0.18 0.84 8.06 -2.91 -0.02 0.82 16 42 H 0.41 3.99 8.95 -92.70 -0.83 3.16 16 43 H 0.43 1.16 8.84 -92.71 -0.82 0.34 16 Total: -1.00 -77.23 363.32 0.13 -77.10 By element: Atomic # 1 Polarization: 37.03 SS G_CDS: -1.37 Total: 35.67 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: 6.04 Total: -13.91 kcal Atomic # 7 Polarization: -109.91 SS G_CDS: -6.17 Total: -116.08 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.05 Total: -29.21 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.68 Total: 46.43 kcal Total: -77.23 0.13 -77.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854762796.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.737 kcal (2) G-P(sol) polarization free energy of solvation -77.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds