Wall clock time and date at job start Tue Mar 31 2020 15:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46600 * 2 1 4 4 N 1.46502 * 109.46776 * 240.00192 * 2 1 3 5 5 C 1.34777 * 119.99869 * 85.00411 * 4 2 1 6 6 O 1.21279 * 120.00288 * 359.97438 * 5 4 2 7 7 C 1.50705 * 119.99597 * 179.97438 * 5 4 2 8 8 C 1.50700 * 109.46741 * 179.97438 * 7 5 4 9 9 C 1.37643 * 120.12631 * 264.99803 * 8 7 5 10 10 C 1.38616 * 120.24780 * 179.70859 * 9 8 7 11 11 C 1.38653 * 120.49943 * 0.02562 * 10 9 8 12 12 C 1.37596 * 120.25300 * 0.02562 * 11 10 9 13 13 C 1.40700 * 120.12882 * 84.72109 * 8 7 5 14 14 C 1.41393 * 120.24177 * 0.25215 * 13 8 7 15 15 H 1.07999 * 120.00181 * 334.03233 * 14 13 8 16 16 C 1.39956 * 119.99799 * 154.03031 * 14 13 8 17 17 N 1.30823 * 119.99664 * 343.68393 * 16 14 13 18 18 Si 1.86795 * 119.99774 * 163.68216 * 16 14 13 19 19 H 1.48503 * 109.46935 * 60.00104 * 18 16 14 20 20 H 1.48505 * 109.46864 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47329 * 300.00142 * 18 16 14 22 22 C 1.50696 * 109.47227 * 119.99938 * 2 1 3 23 23 N 1.31790 * 119.08078 * 75.00061 * 22 2 1 24 24 C 1.32552 * 121.01214 * 179.97438 * 23 22 2 25 25 C 1.38126 * 119.19540 * 359.97438 * 24 23 22 26 26 C 1.39619 * 118.33190 * 0.02562 * 25 24 23 27 27 N 1.38548 * 120.52956 * 180.02562 * 26 25 24 28 28 N 1.31752 * 119.08586 * 254.73187 * 22 2 1 29 29 H 1.09003 * 109.46942 * 299.99589 * 1 2 3 30 30 H 1.08995 * 109.47536 * 59.99666 * 1 2 3 31 31 H 1.08993 * 109.47028 * 180.02562 * 1 2 3 32 32 H 0.96997 * 119.99745 * 264.99677 * 4 2 1 33 33 H 1.09003 * 109.47423 * 59.99638 * 7 5 4 34 34 H 1.08994 * 109.47061 * 299.99356 * 7 5 4 35 35 H 1.07999 * 119.87726 * 359.72364 * 9 8 7 36 36 H 1.07997 * 119.75071 * 180.02562 * 10 9 8 37 37 H 1.08009 * 119.87536 * 180.02562 * 11 10 9 38 38 H 1.07995 * 120.12948 * 179.97438 * 12 11 10 39 39 H 0.97005 * 119.99322 * 179.97438 * 17 16 14 40 40 H 1.07997 * 120.40679 * 179.97438 * 24 23 22 41 41 H 1.07998 * 120.82999 * 180.02562 * 25 24 23 42 42 H 0.97000 * 119.99911 * 359.97438 * 27 26 25 43 43 H 0.97000 * 120.00145 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8583 1.1585 -2.4117 7 6 2.6499 -0.7285 -3.5875 8 6 2.6999 0.2398 -4.7412 9 6 1.6446 0.3210 -5.6212 10 6 1.6854 1.2149 -6.6798 11 6 2.7871 2.0361 -6.8654 12 6 3.8538 1.9713 -5.9987 13 6 3.8229 1.0683 -4.9196 14 6 4.9126 0.9940 -4.0217 15 1 4.7555 0.6533 -3.0090 16 6 6.1947 1.3620 -4.4453 17 7 6.4569 1.4654 -5.7228 18 14 7.5315 1.7054 -3.1865 19 1 7.7603 0.4907 -2.3636 20 1 8.7882 2.0735 -3.8870 21 1 7.1085 2.8257 -2.3084 22 6 2.0324 -0.7104 1.2304 23 7 1.9649 -2.0255 1.2832 24 6 2.3961 -2.6893 2.3465 25 6 2.9236 -1.9858 3.4117 26 6 2.9804 -0.5936 3.3234 27 7 3.5012 0.1570 4.3649 28 7 2.5317 0.0002 2.2212 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 2.2490 -1.6317 -1.1527 33 1 1.9776 -1.5508 -3.8326 34 1 3.6491 -1.1202 -3.3980 35 1 0.7815 -0.3141 -5.4863 36 1 0.8528 1.2722 -7.3652 37 1 2.8081 2.7293 -7.6934 38 1 4.7111 2.6115 -6.1453 39 1 7.3455 1.7208 -6.0163 40 1 2.3357 -3.7671 2.3795 41 1 3.2830 -2.4999 4.2909 42 1 3.8296 -0.2843 5.1639 43 1 3.5373 1.1238 4.2953 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854762797.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:04 Heat of formation + Delta-G solvation = 28.024699 kcal Electronic energy + Delta-G solvation = -26821.601862 eV Core-core repulsion = 23059.161041 eV Total energy + Delta-G solvation = -3762.440821 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.20431 -39.16879 -37.34974 -36.14822 -34.82629 -33.53935 -32.93622 -31.76595 -30.70932 -29.69839 -29.34387 -26.65155 -25.15297 -24.75753 -23.96451 -21.87281 -20.83864 -20.19147 -19.32357 -18.33454 -17.86451 -17.06988 -16.31427 -16.10587 -15.58559 -15.53733 -15.34342 -15.03740 -14.57912 -14.34180 -14.23261 -13.55735 -13.50577 -13.37765 -12.96035 -12.63639 -12.47668 -12.15437 -11.91154 -11.62077 -11.49333 -11.37833 -11.08316 -10.91952 -10.89534 -10.82559 -10.60887 -10.33567 -10.19139 -9.39732 -9.38834 -9.29149 -9.09548 -9.06096 -8.69971 -8.64671 -7.22384 -7.20259 -6.66129 -4.25911 0.80202 1.18799 2.85167 2.93268 3.08153 3.10276 3.14791 3.34987 3.42607 3.58965 3.79278 3.88170 3.99945 4.28788 4.63806 4.74164 4.94291 5.08232 5.28462 5.38715 5.45831 5.58867 5.76017 5.90135 6.01432 6.07014 6.14014 6.27168 6.31091 6.38119 6.53367 6.59821 6.61054 6.83044 6.87513 6.90218 7.16875 7.33709 7.38320 7.51039 7.73113 7.99223 8.07389 8.11975 8.17448 8.21758 8.40363 8.73461 8.96835 9.00311 9.10328 10.28120 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.012119 B = 0.003708 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.833647 B = 7548.746350 C = 9193.310994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.213 3.787 3 H 0.111 0.889 4 N -0.733 5.733 5 C 0.518 3.482 6 O -0.520 6.520 7 C -0.070 4.070 8 C -0.179 4.179 9 C -0.081 4.081 10 C -0.240 4.240 11 C -0.107 4.107 12 C -0.160 4.160 13 C 0.130 3.870 14 C -0.456 4.456 15 H 0.073 0.927 16 C 0.078 3.922 17 N -0.796 5.796 18 Si 0.901 3.099 19 H -0.267 1.267 20 H -0.278 1.278 21 H -0.264 1.264 22 C 0.366 3.634 23 N -0.552 5.552 24 C 0.180 3.820 25 C -0.300 4.300 26 C 0.440 3.560 27 N -0.837 5.837 28 N -0.568 5.568 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.403 0.597 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.116 0.884 39 H 0.279 0.721 40 H 0.167 0.833 41 H 0.140 0.860 42 H 0.411 0.589 43 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.650 -7.978 18.392 20.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.106 3.894 3 H 0.129 0.871 4 N -0.388 5.388 5 C 0.305 3.695 6 O -0.393 6.393 7 C -0.109 4.109 8 C -0.181 4.181 9 C -0.099 4.099 10 C -0.259 4.259 11 C -0.126 4.126 12 C -0.179 4.179 13 C 0.127 3.873 14 C -0.486 4.486 15 H 0.091 0.909 16 C -0.139 4.139 17 N -0.422 5.422 18 Si 0.726 3.274 19 H -0.192 1.192 20 H -0.204 1.204 21 H -0.189 1.189 22 C 0.096 3.904 23 N -0.271 5.271 24 C 0.017 3.983 25 C -0.328 4.328 26 C 0.194 3.806 27 N -0.381 5.381 28 N -0.293 5.293 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.238 0.762 33 H 0.095 0.905 34 H 0.114 0.886 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.134 0.866 39 H 0.090 0.910 40 H 0.185 0.815 41 H 0.158 0.842 42 H 0.241 0.759 43 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -4.965 -6.622 17.372 19.243 hybrid contribution 1.369 -0.539 1.865 2.375 sum -3.596 -7.161 19.237 20.840 Atomic orbital electron populations 1.22107 0.93468 1.02705 1.02887 1.19386 0.94328 0.96502 0.79189 0.87142 1.46124 1.69703 1.14298 1.08716 1.21256 0.76583 0.87651 0.83967 1.90679 1.48141 1.15890 1.84608 1.20255 1.02066 0.97529 0.91084 1.19059 0.98318 1.02352 0.98325 1.20304 0.96083 0.98091 0.95452 1.20299 0.99363 1.04290 1.01955 1.20666 0.94705 0.98717 0.98512 1.21282 0.97968 1.00966 0.97663 1.17323 0.90699 0.88010 0.91242 1.19443 0.91574 1.39157 0.98412 0.90867 1.25852 0.99908 0.92708 0.95450 1.69818 1.22494 1.34658 1.15216 0.86485 0.79461 0.80008 0.81455 1.19207 1.20352 1.18900 1.22938 0.88020 0.86642 0.92824 1.68155 1.22136 1.09297 1.27474 1.22914 0.87860 1.00601 0.86900 1.22110 1.12890 0.93671 1.04096 1.18515 0.86677 0.88490 0.86935 1.42192 1.68101 1.10198 1.17610 1.67727 1.18270 1.41512 1.01760 0.92109 0.90592 0.91784 0.76198 0.90451 0.88642 0.89706 0.89713 0.89658 0.86596 0.91000 0.81545 0.84166 0.75861 0.76133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.47 37.16 0.35 -1.71 16 2 C 0.21 3.30 2.97 -69.08 -0.21 3.10 16 3 H 0.11 1.96 7.55 -51.93 -0.39 1.57 16 4 N -0.73 -11.95 5.06 -54.93 -0.28 -12.23 16 5 C 0.52 10.50 7.42 -10.98 -0.08 10.41 16 6 O -0.52 -12.64 15.70 5.56 0.09 -12.56 16 7 C -0.07 -1.41 5.18 -29.03 -0.15 -1.56 16 8 C -0.18 -4.41 4.43 -103.91 -0.46 -4.87 16 9 C -0.08 -1.91 9.66 -39.66 -0.38 -2.30 16 10 C -0.24 -5.71 10.05 -39.29 -0.39 -6.11 16 11 C -0.11 -2.69 10.02 -39.66 -0.40 -3.08 16 12 C -0.16 -4.36 8.68 -38.87 -0.34 -4.70 16 13 C 0.13 3.55 5.56 -106.82 -0.59 2.96 16 14 C -0.46 -12.35 8.15 -37.74 -0.31 -12.66 16 15 H 0.07 1.95 6.67 -52.49 -0.35 1.60 16 16 C 0.08 2.01 5.16 -17.34 -0.09 1.92 16 17 N -0.80 -21.01 10.97 55.55 0.61 -20.40 16 18 Si 0.90 19.56 29.59 -169.99 -5.03 14.53 16 19 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 20 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 21 H -0.26 -5.83 7.11 56.52 0.40 -5.43 16 22 C 0.37 5.20 6.58 -157.24 -1.03 4.16 16 23 N -0.55 -6.94 9.60 -10.81 -0.10 -7.04 16 24 C 0.18 1.71 11.29 -17.28 -0.20 1.51 16 25 C -0.30 -2.61 10.04 -39.11 -0.39 -3.00 16 26 C 0.44 4.70 7.82 -154.77 -1.21 3.49 16 27 N -0.84 -5.76 9.06 31.24 0.28 -5.48 16 28 N -0.57 -7.88 10.35 -9.97 -0.10 -7.98 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.40 5.79 8.02 -40.82 -0.33 5.46 16 33 H 0.08 1.32 8.05 -51.93 -0.42 0.90 16 34 H 0.10 1.93 7.07 -51.93 -0.37 1.56 16 35 H 0.08 1.76 8.06 -52.49 -0.42 1.33 16 36 H 0.08 1.79 8.06 -52.49 -0.42 1.37 16 37 H 0.09 1.91 8.06 -52.48 -0.42 1.48 16 38 H 0.12 3.25 6.22 -52.49 -0.33 2.93 16 39 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 40 H 0.17 0.99 8.06 -52.49 -0.42 0.56 16 41 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.41 1.50 8.84 -40.82 -0.36 1.14 16 43 H 0.41 2.68 8.95 -40.82 -0.37 2.31 16 LS Contribution 368.50 15.07 5.55 5.55 Total: -1.00 -33.54 368.50 -10.29 -43.83 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: -5.42 Total: 14.23 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -5.88 Total: -12.43 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: 0.41 Total: -53.14 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.09 Total: -12.56 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.03 Total: 14.53 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.54 -10.29 -43.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854762797.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.850 kcal (2) G-P(sol) polarization free energy of solvation -33.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds