Wall clock time and date at job start Tue Mar 31 2020 14:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 109.47168 * 2 1 4 4 C 1.50697 * 109.47350 * 240.00068 * 2 1 3 5 5 C 1.38649 * 120.78832 * 294.47797 * 4 2 1 6 6 C 1.38211 * 119.16200 * 179.97438 * 5 4 2 7 7 N 1.31862 * 120.76440 * 359.97438 * 6 5 4 8 8 C 1.31873 * 121.72808 * 0.02562 * 7 6 5 9 9 C 1.38210 * 120.76030 * 0.02562 * 8 7 6 10 10 N 1.46501 * 109.47337 * 119.99856 * 2 1 3 11 11 C 1.46501 * 119.99493 * 53.22849 * 10 2 1 12 12 C 1.34772 * 120.00307 * 233.23415 * 10 2 1 13 13 O 1.21580 * 119.99823 * 359.97438 * 12 10 2 14 14 N 1.34779 * 120.00297 * 180.02562 * 12 10 2 15 15 C 1.39454 * 120.00190 * 174.99441 * 14 12 10 16 16 C 1.38647 * 119.65067 * 185.25219 * 15 14 12 17 17 C 1.40813 * 118.67428 * 179.97438 * 16 15 14 18 18 C 1.41546 * 120.99434 * 179.97438 * 17 16 15 19 19 H 1.08006 * 120.00020 * 146.66669 * 18 17 16 20 20 C 1.40026 * 119.99993 * 326.67132 * 18 17 16 21 21 N 1.30745 * 119.99972 * 169.46967 * 20 18 17 22 22 Si 1.86792 * 120.00305 * 349.46708 * 20 18 17 23 23 H 1.48507 * 109.47199 * 87.91609 * 22 20 18 24 24 H 1.48502 * 109.47590 * 207.91952 * 22 20 18 25 25 H 1.48505 * 109.47063 * 327.91712 * 22 20 18 26 26 C 1.41165 * 118.01028 * 0.02562 * 17 16 15 27 27 C 1.36593 * 119.12219 * 0.02562 * 26 17 16 28 28 N 1.32067 * 121.26048 * 359.73707 * 27 26 17 29 29 H 1.09004 * 109.47164 * 299.99892 * 1 2 3 30 30 H 1.09006 * 109.47350 * 59.99935 * 1 2 3 31 31 H 1.09006 * 109.47168 * 180.02562 * 1 2 3 32 32 H 1.08004 * 120.42159 * 0.25202 * 5 4 2 33 33 H 1.08004 * 119.61528 * 179.97438 * 6 5 4 34 34 H 1.07993 * 119.62046 * 179.97438 * 8 7 6 35 35 H 1.08007 * 120.41314 * 180.02562 * 9 8 7 36 36 H 1.09003 * 109.46778 * 91.99865 * 11 10 2 37 37 H 1.09000 * 109.47014 * 211.98990 * 11 10 2 38 38 H 1.08995 * 109.47869 * 331.99381 * 11 10 2 39 39 H 0.97001 * 119.99174 * 354.99738 * 14 12 10 40 40 H 1.08004 * 120.65983 * 0.02562 * 16 15 14 41 41 H 0.97006 * 120.00366 * 179.97438 * 21 20 18 42 42 H 1.07997 * 120.43934 * 179.97438 * 26 17 16 43 43 H 1.08004 * 119.36825 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 6 1.8036 -2.0660 -1.4104 6 6 2.2790 -2.6835 -2.5518 7 7 2.9421 -1.9986 -3.4628 8 6 3.1780 -0.7085 -3.3250 9 6 2.7341 -0.0239 -2.2094 10 7 2.0183 -0.6906 1.1962 11 6 1.5464 -2.0426 1.5053 12 6 2.9016 -0.0821 2.0122 13 8 3.2935 1.0398 1.7554 14 7 3.3513 -0.7176 3.1124 15 6 4.3423 -0.1321 3.8998 16 6 4.8772 -0.8382 4.9664 17 6 5.8771 -0.2275 5.7474 18 6 6.4567 -0.9033 6.8479 19 1 7.4939 -0.7365 7.0987 20 6 5.6854 -1.7882 7.6113 21 7 6.2609 -2.5645 8.4919 22 14 3.8343 -1.8596 7.3715 23 1 3.5117 -2.8296 6.2943 24 1 3.1875 -2.2915 8.6366 25 1 3.3320 -0.5143 6.9930 26 6 6.2834 1.0792 5.4008 27 6 5.6973 1.6962 4.3324 28 7 4.7651 1.0916 3.6185 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.2570 -2.6314 -0.6701 33 1 2.1054 -3.7392 -2.6992 34 1 3.7251 -0.1809 -4.0923 35 1 2.9301 1.0328 -2.1025 36 1 2.2255 -2.7736 1.0665 37 1 1.5158 -2.1784 2.5864 38 1 0.5470 -2.1818 1.0932 39 1 2.9856 -1.5823 3.3564 40 1 4.5344 -1.8370 5.1930 41 1 5.7266 -3.1773 9.0211 42 1 7.0469 1.5847 5.9734 43 1 6.0048 2.6961 4.0639 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871722657.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:54 Heat of formation + Delta-G solvation = 64.665519 kcal Electronic energy + Delta-G solvation = -27113.067299 eV Core-core repulsion = 23352.215343 eV Total energy + Delta-G solvation = -3760.851956 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.86226 -39.95517 -38.52173 -36.45674 -34.54906 -33.91736 -32.91393 -31.42776 -31.30288 -30.35593 -28.72297 -27.29007 -26.02609 -24.50809 -23.59881 -22.51345 -22.38094 -20.77557 -19.54112 -18.37720 -17.77024 -17.09313 -16.52036 -16.24371 -15.89542 -15.60079 -15.45353 -15.07154 -14.66548 -14.28741 -14.12120 -13.94486 -13.82400 -13.62574 -13.46451 -13.15234 -12.98369 -12.65137 -12.57850 -12.54110 -12.24493 -11.77082 -11.62626 -11.33255 -11.00460 -10.87036 -10.68464 -10.12063 -9.97100 -9.87359 -9.73045 -9.70681 -9.37986 -9.34350 -8.72988 -8.23302 -7.92481 -7.30554 -7.04188 -4.75524 0.93896 0.99554 2.34812 2.59728 2.64588 2.96739 3.09143 3.21046 3.55863 3.63403 3.86109 3.98461 4.24886 4.28786 4.54055 4.58026 4.78432 4.83218 4.86818 4.97963 5.01065 5.22352 5.28917 5.35626 5.42829 5.43513 5.51138 5.57327 5.67658 5.74506 5.86724 6.09952 6.16528 6.31026 6.38089 6.44795 6.49385 6.53652 6.87595 6.96983 7.12682 7.24607 7.61983 7.76722 7.85352 8.06710 8.20558 8.40954 8.64126 8.87101 9.42735 9.97778 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.017969 B = 0.003153 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.888319 B = 8877.545405 C = 9276.577255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.193 3.807 3 H 0.115 0.885 4 C -0.047 4.047 5 C -0.167 4.167 6 C 0.095 3.905 7 N -0.488 5.488 8 C 0.098 3.902 9 C -0.157 4.157 10 N -0.630 5.630 11 C 0.069 3.931 12 C 0.698 3.302 13 O -0.524 6.524 14 N -0.670 5.670 15 C 0.384 3.616 16 C -0.323 4.323 17 C 0.131 3.869 18 C -0.441 4.441 19 H 0.096 0.904 20 C 0.084 3.916 21 N -0.807 5.807 22 Si 0.919 3.081 23 H -0.271 1.271 24 H -0.291 1.291 25 H -0.248 1.248 26 C -0.268 4.268 27 C 0.129 3.871 28 N -0.551 5.551 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.136 0.864 33 H 0.154 0.846 34 H 0.156 0.844 35 H 0.137 0.863 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.404 0.596 40 H 0.111 0.889 41 H 0.287 0.713 42 H 0.111 0.889 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.096 -1.457 -15.637 20.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.089 3.911 3 H 0.133 0.867 4 C -0.057 4.057 5 C -0.187 4.187 6 C -0.062 4.062 7 N -0.197 5.197 8 C -0.059 4.059 9 C -0.177 4.177 10 N -0.370 5.370 11 C -0.075 4.075 12 C 0.399 3.601 13 O -0.394 6.394 14 N -0.319 5.319 15 C 0.156 3.844 16 C -0.348 4.348 17 C 0.123 3.877 18 C -0.471 4.471 19 H 0.114 0.886 20 C -0.135 4.135 21 N -0.432 5.432 22 Si 0.747 3.253 23 H -0.197 1.197 24 H -0.219 1.219 25 H -0.171 1.171 26 C -0.292 4.292 27 C -0.023 4.023 28 N -0.270 5.270 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.154 0.846 33 H 0.171 0.829 34 H 0.173 0.827 35 H 0.155 0.845 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.240 0.760 40 H 0.128 0.872 41 H 0.098 0.902 42 H 0.129 0.871 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.837 -0.766 -17.106 21.401 hybrid contribution -0.816 -0.914 1.723 2.114 sum -13.653 -1.681 -15.384 20.637 Atomic orbital electron populations 1.22155 0.93667 1.02622 1.03106 1.19761 0.93945 0.97320 0.80112 0.86668 1.20677 0.95140 0.94353 0.95486 1.22193 1.02064 0.95094 0.99355 1.22738 0.93624 1.00054 0.89747 1.67657 1.13057 1.08658 1.30358 1.22762 0.96435 0.90257 0.96433 1.22124 0.98665 1.01922 0.94998 1.47128 1.47467 1.17001 1.25386 1.21900 1.00335 0.83937 1.01280 1.15957 0.79489 0.84642 0.80036 1.91009 1.58703 1.16671 1.73041 1.42784 1.40356 1.23179 1.25582 1.17789 0.87910 0.90300 0.88422 1.21315 1.10242 1.01440 1.01844 1.17712 0.88486 0.90470 0.91065 1.19482 0.99847 1.18741 1.09047 0.88609 1.26144 1.01890 0.91901 0.93560 1.69602 1.39139 1.16197 1.18270 0.86231 0.81721 0.80798 0.76594 1.19723 1.21869 1.17139 1.21739 1.07812 0.96479 1.03152 1.21647 0.91637 0.97968 0.91013 1.67311 1.18015 1.08959 1.32747 0.91236 0.91043 0.91995 0.84625 0.82885 0.82704 0.84476 0.92389 0.91426 0.90328 0.75991 0.87184 0.90243 0.87107 0.85298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 8.91 37.15 0.33 -0.95 16 2 C 0.19 2.15 2.97 -69.09 -0.20 1.95 16 3 H 0.12 1.52 6.74 -51.93 -0.35 1.17 16 4 C -0.05 -0.50 4.98 -104.32 -0.52 -1.02 16 5 C -0.17 -1.57 8.37 -39.44 -0.33 -1.90 16 6 C 0.10 0.94 11.18 -17.55 -0.20 0.74 16 7 N -0.49 -5.68 10.36 -13.25 -0.14 -5.82 16 8 C 0.10 1.03 11.18 -17.54 -0.20 0.83 16 9 C -0.16 -1.66 9.76 -39.44 -0.39 -2.05 16 10 N -0.63 -8.13 2.75 -181.01 -0.50 -8.63 16 11 C 0.07 0.62 8.06 59.85 0.48 1.10 16 12 C 0.70 12.67 8.24 -86.92 -0.72 11.95 16 13 O -0.52 -11.53 13.94 5.30 0.07 -11.46 16 14 N -0.67 -12.57 5.27 -15.86 -0.08 -12.65 16 15 C 0.38 8.82 7.42 -154.68 -1.15 7.68 16 16 C -0.32 -7.63 7.05 -38.46 -0.27 -7.90 16 17 C 0.13 3.28 5.11 -106.55 -0.54 2.74 16 18 C -0.44 -11.56 9.66 -37.65 -0.36 -11.93 16 19 H 0.10 2.62 8.06 -52.48 -0.42 2.20 16 20 C 0.08 2.14 5.49 -17.34 -0.10 2.04 16 21 N -0.81 -20.78 13.92 55.55 0.77 -20.01 16 22 Si 0.92 20.02 24.48 -169.99 -4.16 15.85 16 23 H -0.27 -5.48 6.49 56.52 0.37 -5.11 16 24 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.25 -5.68 6.88 56.52 0.39 -5.29 16 26 C -0.27 -6.23 9.85 -39.07 -0.38 -6.61 16 27 C 0.13 2.91 11.10 -18.04 -0.20 2.71 16 28 N -0.55 -13.34 7.85 -12.75 -0.10 -13.44 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.42 6.15 -51.93 -0.32 0.10 16 32 H 0.14 0.97 5.16 -52.48 -0.27 0.70 16 33 H 0.15 1.10 8.06 -52.48 -0.42 0.68 16 34 H 0.16 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.14 1.29 8.01 -52.48 -0.42 0.87 16 36 H 0.06 0.50 7.26 -51.93 -0.38 0.12 16 37 H 0.07 0.59 6.40 -51.93 -0.33 0.25 16 38 H 0.08 0.50 5.36 -51.93 -0.28 0.22 16 39 H 0.40 6.20 6.43 -40.82 -0.26 5.94 16 40 H 0.11 2.49 4.56 -52.48 -0.24 2.25 16 41 H 0.29 6.67 8.29 -40.82 -0.34 6.33 16 42 H 0.11 2.36 8.06 -52.49 -0.42 1.94 16 43 H 0.13 2.50 8.06 -52.48 -0.42 2.08 16 LS Contribution 349.35 15.07 5.26 5.26 Total: -1.00 -33.09 349.35 -8.60 -41.69 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -4.99 Total: 9.81 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -4.74 Total: -0.62 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: -0.05 Total: -60.55 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.07 Total: -11.46 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -4.16 Total: 15.85 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.09 -8.60 -41.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871722657.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.358 kcal (2) G-P(sol) polarization free energy of solvation -33.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds