Wall clock time and date at job start Tue Mar 31 2020 15:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47301 * 2 1 4 4 C 1.52999 * 109.47113 * 240.00161 * 2 1 3 5 5 C 1.50704 * 109.47029 * 175.00036 * 4 2 1 6 6 C 1.38228 * 119.61874 * 124.97836 * 5 4 2 7 7 C 1.38623 * 119.16325 * 179.78768 * 6 5 4 8 8 C 1.38681 * 118.41875 * 0.47507 * 7 6 5 9 9 C 1.38178 * 119.16166 * 359.50280 * 8 7 6 10 10 N 1.31849 * 119.61792 * 304.99698 * 5 4 2 11 11 N 1.46506 * 109.47141 * 120.00059 * 2 1 3 12 12 C 1.34777 * 119.99817 * 274.99882 * 11 2 1 13 13 O 1.21572 * 120.00353 * 359.97438 * 12 11 2 14 14 N 1.34779 * 119.99482 * 179.97438 * 12 11 2 15 15 C 1.39457 * 119.99505 * 175.14605 * 14 12 11 16 16 C 1.38650 * 119.64530 * 185.22329 * 15 14 12 17 17 C 1.40820 * 118.67383 * 179.97438 * 16 15 14 18 18 C 1.41538 * 120.99947 * 179.97438 * 17 16 15 19 19 H 1.08004 * 120.00284 * 149.48819 * 18 17 16 20 20 C 1.40033 * 119.99889 * 329.49663 * 18 17 16 21 21 N 1.30747 * 120.00093 * 167.68569 * 20 18 17 22 22 Si 1.86800 * 119.99985 * 347.67864 * 20 18 17 23 23 H 1.48502 * 109.47013 * 92.44537 * 22 20 18 24 24 H 1.48504 * 109.47238 * 212.44538 * 22 20 18 25 25 H 1.48502 * 109.47108 * 332.44802 * 22 20 18 26 26 C 1.41170 * 118.00313 * 0.02562 * 17 16 15 27 27 C 1.36584 * 119.13040 * 0.02562 * 26 17 16 28 28 N 1.32073 * 121.25699 * 359.73567 * 27 26 17 29 29 H 1.08994 * 109.47006 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47053 * 299.99907 * 1 2 3 31 31 H 1.09001 * 109.46827 * 59.99412 * 1 2 3 32 32 H 1.09003 * 109.47303 * 55.00024 * 4 2 1 33 33 H 1.08998 * 109.47286 * 295.00004 * 4 2 1 34 34 H 1.08001 * 120.41564 * 359.97438 * 6 5 4 35 35 H 1.07998 * 120.79646 * 180.23030 * 7 6 5 36 36 H 1.07999 * 120.41615 * 179.77856 * 8 7 6 37 37 H 1.08002 * 119.61694 * 180.24940 * 9 8 7 38 38 H 0.96998 * 119.99680 * 95.00325 * 11 2 1 39 39 H 0.97001 * 120.00294 * 355.14974 * 14 12 11 40 40 H 1.07999 * 120.66368 * 0.02562 * 16 15 14 41 41 H 0.96995 * 120.00038 * 179.97438 * 21 20 18 42 42 H 1.08005 * 120.43060 * 179.97438 * 26 17 16 43 43 H 1.08003 * 119.37318 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3127 6 6 4.3045 -1.7634 -1.4126 7 6 5.6850 -1.6544 -1.4748 8 6 6.2501 -0.3889 -1.4239 9 6 5.4237 0.7140 -1.3241 10 7 4.1134 0.5726 -1.2719 11 7 2.0183 -0.6906 1.1962 12 6 2.1471 -0.0183 2.3572 13 8 1.8584 1.1614 2.4117 14 7 2.5958 -0.6538 3.4577 15 6 2.8254 0.0629 4.6318 16 6 3.3891 -0.5756 5.7259 17 6 3.6124 0.1678 6.9009 18 6 4.1845 -0.4345 8.0469 19 1 4.7897 0.1536 8.7209 20 6 3.9660 -1.7931 8.3066 21 7 4.6769 -2.4074 9.2158 22 14 2.6586 -2.7276 7.3544 23 1 3.2743 -3.3631 6.1618 24 1 2.0671 -3.7760 8.2241 25 1 1.5950 -1.7866 6.9202 26 6 3.2476 1.5315 6.9018 27 6 2.6970 2.0733 5.7754 28 7 2.5059 1.3474 4.6887 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 1.6054 -0.2617 -2.1370 33 1 1.7516 -1.7715 -1.2057 34 1 3.8305 -2.7333 -1.4449 35 1 6.3060 -2.5341 -1.5569 36 1 7.3223 -0.2668 -1.4662 37 1 5.8557 1.7031 -1.2880 38 1 2.2491 -1.6318 1.1526 39 1 2.7592 -1.6097 3.4331 40 1 3.6524 -1.6219 5.6777 41 1 4.5253 -3.3483 9.3960 42 1 3.4011 2.1383 7.7821 43 1 2.4168 3.1163 5.7716 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871735439.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:23 Heat of formation + Delta-G solvation = 44.372708 kcal Electronic energy + Delta-G solvation = -26840.941894 eV Core-core repulsion = 23079.209975 eV Total energy + Delta-G solvation = -3761.731918 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.53184 -39.87251 -38.37335 -36.18113 -34.25669 -33.75374 -32.75862 -32.33605 -31.27274 -30.65928 -28.53260 -27.20824 -25.96711 -23.79225 -23.03830 -22.33567 -22.07761 -20.64027 -20.08623 -18.34929 -17.69853 -17.06951 -16.64225 -16.13932 -15.73622 -15.59144 -15.23900 -14.88514 -14.56549 -14.38839 -14.11690 -13.96372 -13.66119 -13.38292 -13.12888 -13.00213 -12.91642 -12.77397 -12.38733 -12.34975 -12.07639 -11.62370 -11.50874 -11.04016 -10.96347 -10.80726 -10.65123 -10.06141 -10.01777 -9.86483 -9.61823 -9.55450 -9.35463 -9.16480 -8.83854 -8.18633 -7.82949 -7.20990 -7.02913 -4.72093 0.91418 1.10079 2.44330 2.65605 2.93424 3.00883 3.13470 3.25266 3.60132 3.78550 3.89441 4.07492 4.37247 4.42398 4.62464 4.66018 4.75286 4.89898 4.96692 5.09740 5.16525 5.42360 5.43487 5.45333 5.52620 5.57405 5.70000 5.72084 5.89991 5.97065 6.08291 6.24356 6.30083 6.39761 6.42726 6.50990 6.59324 6.73638 6.96374 7.09350 7.24274 7.33011 7.67487 7.84826 7.97991 8.23322 8.27506 8.46994 8.67487 9.08594 9.52637 9.98752 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.013614 B = 0.003325 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.199872 B = 8420.268961 C = 8871.204589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.170 3.830 3 H 0.101 0.899 4 C -0.078 4.078 5 C 0.135 3.865 6 C -0.174 4.174 7 C -0.073 4.073 8 C -0.180 4.180 9 C 0.107 3.893 10 N -0.474 5.474 11 N -0.748 5.748 12 C 0.694 3.306 13 O -0.525 6.525 14 N -0.674 5.674 15 C 0.388 3.612 16 C -0.324 4.324 17 C 0.130 3.870 18 C -0.439 4.439 19 H 0.095 0.905 20 C 0.085 3.915 21 N -0.806 5.806 22 Si 0.918 3.082 23 H -0.272 1.272 24 H -0.292 1.292 25 H -0.244 1.244 26 C -0.272 4.272 27 C 0.129 3.871 28 N -0.550 5.550 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.155 0.845 38 H 0.387 0.613 39 H 0.402 0.598 40 H 0.107 0.893 41 H 0.287 0.713 42 H 0.110 0.890 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.571 -4.014 -21.120 21.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.064 3.936 3 H 0.119 0.881 4 C -0.116 4.116 5 C -0.003 4.003 6 C -0.194 4.194 7 C -0.099 4.099 8 C -0.200 4.200 9 C -0.050 4.050 10 N -0.183 5.183 11 N -0.405 5.405 12 C 0.394 3.606 13 O -0.395 6.395 14 N -0.322 5.322 15 C 0.159 3.841 16 C -0.350 4.350 17 C 0.122 3.878 18 C -0.469 4.469 19 H 0.113 0.887 20 C -0.135 4.135 21 N -0.431 5.431 22 Si 0.746 3.254 23 H -0.199 1.199 24 H -0.220 1.220 25 H -0.168 1.168 26 C -0.295 4.295 27 C -0.022 4.022 28 N -0.270 5.270 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.116 0.884 33 H 0.101 0.899 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.172 0.828 38 H 0.220 0.780 39 H 0.236 0.764 40 H 0.124 0.876 41 H 0.097 0.903 42 H 0.128 0.872 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.654 -1.906 -21.632 21.878 hybrid contribution 0.897 -2.845 0.447 3.016 sum -1.758 -4.751 -21.186 21.783 Atomic orbital electron populations 1.22219 0.95364 1.01847 1.02841 1.20682 0.93291 0.98047 0.81577 0.88104 1.20916 0.89394 1.02011 0.99289 1.21161 0.96468 0.88502 0.94193 1.21960 0.94618 0.99604 1.03244 1.21568 0.94998 0.97872 0.95505 1.22149 1.01514 0.93716 1.02617 1.22777 0.88858 0.99219 0.94186 1.67457 1.12729 1.26509 1.11591 1.45287 1.72926 1.13185 1.09124 1.16025 0.79109 0.85552 0.79953 1.91018 1.52257 1.13097 1.83109 1.42667 1.68805 1.11039 1.09690 1.17762 0.93069 0.89546 0.83683 1.21195 1.18351 1.00780 0.94650 1.17692 0.87038 0.91627 0.91470 1.19503 1.26665 0.94104 1.06635 0.88671 1.26170 0.95698 0.97445 0.94165 1.69615 1.33765 1.12061 1.27615 0.86224 0.82106 0.78694 0.78425 1.19879 1.21967 1.16770 1.21686 1.10908 0.97190 0.99759 1.21641 0.94647 0.97815 0.88122 1.67336 1.26486 1.04822 1.28341 0.92758 0.91497 0.91773 0.88369 0.89857 0.84980 0.84972 0.84902 0.82781 0.78007 0.76425 0.87558 0.90274 0.87231 0.85385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 9.48 37.16 0.35 -1.40 16 2 C 0.17 2.02 2.50 -67.93 -0.17 1.85 16 3 H 0.10 1.56 7.23 -51.93 -0.38 1.18 16 4 C -0.08 -0.67 5.16 -27.88 -0.14 -0.81 16 5 C 0.13 1.43 5.91 -82.59 -0.49 0.95 16 6 C -0.17 -1.54 9.71 -39.44 -0.38 -1.93 16 7 C -0.07 -0.63 10.18 -39.28 -0.40 -1.03 16 8 C -0.18 -1.67 10.11 -39.44 -0.40 -2.07 16 9 C 0.11 1.19 11.18 -17.55 -0.20 0.99 16 10 N -0.47 -6.06 9.78 -9.47 -0.09 -6.16 16 11 N -0.75 -10.00 4.80 -58.67 -0.28 -10.29 16 12 C 0.69 13.12 8.49 -86.91 -0.74 12.38 16 13 O -0.52 -12.19 14.26 5.30 0.08 -12.11 16 14 N -0.67 -13.04 5.40 -15.86 -0.09 -13.13 16 15 C 0.39 9.18 7.42 -154.68 -1.15 8.04 16 16 C -0.32 -7.86 6.95 -38.45 -0.27 -8.12 16 17 C 0.13 3.33 5.17 -106.55 -0.55 2.78 16 18 C -0.44 -11.70 9.67 -37.65 -0.36 -12.06 16 19 H 0.10 2.64 8.06 -52.48 -0.42 2.22 16 20 C 0.08 2.18 5.48 -17.34 -0.10 2.08 16 21 N -0.81 -20.96 13.92 55.55 0.77 -20.18 16 22 Si 0.92 20.37 24.43 -169.99 -4.15 16.22 16 23 H -0.27 -5.66 6.67 56.52 0.38 -5.28 16 24 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.24 -5.70 6.65 56.52 0.38 -5.33 16 26 C -0.27 -6.47 9.85 -39.07 -0.38 -6.85 16 27 C 0.13 3.01 11.10 -18.05 -0.20 2.81 16 28 N -0.55 -13.77 7.85 -12.76 -0.10 -13.87 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.51 7.87 -51.93 -0.41 0.10 16 34 H 0.13 0.82 7.95 -52.49 -0.42 0.40 16 35 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 36 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.15 1.42 8.06 -52.49 -0.42 0.99 16 38 H 0.39 4.02 8.62 -40.82 -0.35 3.67 16 39 H 0.40 6.30 8.71 -40.82 -0.36 5.95 16 40 H 0.11 2.47 4.43 -52.49 -0.23 2.24 16 41 H 0.29 6.73 8.29 -40.82 -0.34 6.39 16 42 H 0.11 2.40 8.06 -52.48 -0.42 1.97 16 43 H 0.13 2.58 8.06 -52.48 -0.42 2.16 16 LS Contribution 363.26 15.07 5.47 5.47 Total: -1.00 -34.23 363.26 -9.52 -43.75 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -5.55 Total: 12.70 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: -5.57 Total: -2.40 kcal Atomic # 7 Polarization: -63.84 SS G_CDS: 0.21 Total: -63.62 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.08 Total: -12.11 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.15 Total: 16.22 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.23 -9.52 -43.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871735439.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.121 kcal (2) G-P(sol) polarization free energy of solvation -34.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds