Wall clock time and date at job start Tue Mar 31 2020 15:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47301 * 2 1 4 4 C 1.52999 * 109.47113 * 240.00161 * 2 1 3 5 5 C 1.50704 * 109.47029 * 175.00036 * 4 2 1 6 6 C 1.38228 * 119.61874 * 124.97836 * 5 4 2 7 7 C 1.38623 * 119.16325 * 179.78768 * 6 5 4 8 8 C 1.38681 * 118.41875 * 0.47507 * 7 6 5 9 9 C 1.38178 * 119.16166 * 359.50280 * 8 7 6 10 10 N 1.31849 * 119.61792 * 304.99698 * 5 4 2 11 11 N 1.46506 * 109.47141 * 120.00059 * 2 1 3 12 12 C 1.34777 * 119.99817 * 274.99882 * 11 2 1 13 13 O 1.21572 * 120.00353 * 359.97438 * 12 11 2 14 14 N 1.34779 * 119.99482 * 179.97438 * 12 11 2 15 15 C 1.39457 * 119.99505 * 175.14605 * 14 12 11 16 16 C 1.38650 * 119.64530 * 185.22329 * 15 14 12 17 17 C 1.40820 * 118.67383 * 179.97438 * 16 15 14 18 18 C 1.41538 * 120.99947 * 179.97438 * 17 16 15 19 19 H 1.08004 * 120.00284 * 149.48819 * 18 17 16 20 20 C 1.40033 * 119.99889 * 329.49663 * 18 17 16 21 21 N 1.30747 * 120.00093 * 167.68569 * 20 18 17 22 22 Si 1.86800 * 119.99985 * 347.67864 * 20 18 17 23 23 H 1.48502 * 109.47013 * 92.44537 * 22 20 18 24 24 H 1.48504 * 109.47238 * 212.44538 * 22 20 18 25 25 H 1.48502 * 109.47108 * 332.44802 * 22 20 18 26 26 C 1.41170 * 118.00313 * 0.02562 * 17 16 15 27 27 C 1.36584 * 119.13040 * 0.02562 * 26 17 16 28 28 N 1.32073 * 121.25699 * 359.73567 * 27 26 17 29 29 H 1.08994 * 109.47006 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47053 * 299.99907 * 1 2 3 31 31 H 1.09001 * 109.46827 * 59.99412 * 1 2 3 32 32 H 1.09003 * 109.47303 * 55.00024 * 4 2 1 33 33 H 1.08998 * 109.47286 * 295.00004 * 4 2 1 34 34 H 1.08001 * 120.41564 * 359.97438 * 6 5 4 35 35 H 1.07998 * 120.79646 * 180.23030 * 7 6 5 36 36 H 1.07999 * 120.41615 * 179.77856 * 8 7 6 37 37 H 1.08002 * 119.61694 * 180.24940 * 9 8 7 38 38 H 0.96998 * 119.99680 * 95.00325 * 11 2 1 39 39 H 0.97001 * 120.00294 * 355.14974 * 14 12 11 40 40 H 1.07999 * 120.66368 * 0.02562 * 16 15 14 41 41 H 0.96995 * 120.00038 * 179.97438 * 21 20 18 42 42 H 1.08005 * 120.43060 * 179.97438 * 26 17 16 43 43 H 1.08003 * 119.37318 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3127 6 6 4.3045 -1.7634 -1.4126 7 6 5.6850 -1.6544 -1.4748 8 6 6.2501 -0.3889 -1.4239 9 6 5.4237 0.7140 -1.3241 10 7 4.1134 0.5726 -1.2719 11 7 2.0183 -0.6906 1.1962 12 6 2.1471 -0.0183 2.3572 13 8 1.8584 1.1614 2.4117 14 7 2.5958 -0.6538 3.4577 15 6 2.8254 0.0629 4.6318 16 6 3.3891 -0.5756 5.7259 17 6 3.6124 0.1678 6.9009 18 6 4.1845 -0.4345 8.0469 19 1 4.7897 0.1536 8.7209 20 6 3.9660 -1.7931 8.3066 21 7 4.6769 -2.4074 9.2158 22 14 2.6586 -2.7276 7.3544 23 1 3.2743 -3.3631 6.1618 24 1 2.0671 -3.7760 8.2241 25 1 1.5950 -1.7866 6.9202 26 6 3.2476 1.5315 6.9018 27 6 2.6970 2.0733 5.7754 28 7 2.5059 1.3474 4.6887 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 1.6054 -0.2617 -2.1370 33 1 1.7516 -1.7715 -1.2057 34 1 3.8305 -2.7333 -1.4449 35 1 6.3060 -2.5341 -1.5569 36 1 7.3223 -0.2668 -1.4662 37 1 5.8557 1.7031 -1.2880 38 1 2.2491 -1.6318 1.1526 39 1 2.7592 -1.6097 3.4331 40 1 3.6524 -1.6219 5.6777 41 1 4.5253 -3.3483 9.3960 42 1 3.4011 2.1383 7.7821 43 1 2.4168 3.1163 5.7716 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871735439.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:22 Heat of formation + Delta-G solvation = 21.214144 kcal Electronic energy + Delta-G solvation = -26841.946124 eV Core-core repulsion = 23079.209975 eV Total energy + Delta-G solvation = -3762.736149 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.64643 -41.06433 -40.02574 -37.33077 -36.03315 -35.54434 -33.63863 -33.22728 -33.09602 -31.74533 -30.17198 -27.94297 -27.91439 -24.54897 -24.23507 -24.18472 -23.14248 -21.89313 -21.53251 -19.88295 -19.46552 -18.05761 -17.72817 -17.45935 -17.08300 -16.62294 -16.50406 -16.42313 -16.03094 -15.97561 -15.30147 -15.06586 -14.96877 -14.76693 -14.72455 -14.49409 -14.03296 -13.77698 -13.47308 -13.34278 -13.06279 -12.85266 -12.76951 -12.64569 -12.61023 -12.32210 -11.93685 -11.81763 -11.57314 -11.33948 -11.14057 -10.76716 -10.29515 -10.15795 -10.06360 -9.84428 -9.68087 -8.98809 -8.94669 -6.73898 0.21140 0.41759 0.60358 0.76394 1.22130 1.39102 1.47412 1.57043 2.09466 2.25083 2.70665 2.87572 3.12457 3.41015 3.53001 3.69198 3.96316 4.01031 4.08928 4.27671 4.29792 4.35990 4.37187 4.44056 4.58295 4.65873 4.69122 4.72631 4.75869 4.82142 4.89115 4.96184 5.09058 5.12834 5.26405 5.30238 5.30705 5.36568 5.52311 5.63181 5.68104 5.83188 5.87745 6.10998 6.28301 6.51953 6.68178 6.95184 7.12620 7.56357 7.78629 8.10991 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.013614 B = 0.003325 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.199872 B = 8420.268961 C = 8871.204589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.169 3.831 3 H 0.059 0.941 4 C -0.068 4.068 5 C 0.113 3.887 6 C -0.171 4.171 7 C -0.079 4.079 8 C -0.184 4.184 9 C 0.077 3.923 10 N -0.513 5.513 11 N -0.723 5.723 12 C 0.691 3.309 13 O -0.573 6.573 14 N -0.666 5.666 15 C 0.385 3.615 16 C -0.328 4.328 17 C 0.116 3.884 18 C -0.469 4.469 19 H 0.066 0.934 20 C 0.052 3.948 21 N -0.837 5.837 22 Si 0.969 3.031 23 H -0.243 1.243 24 H -0.277 1.277 25 H -0.263 1.263 26 C -0.282 4.282 27 C 0.128 3.872 28 N -0.572 5.572 29 H 0.079 0.921 30 H 0.029 0.971 31 H 0.083 0.917 32 H 0.112 0.888 33 H 0.120 0.880 34 H 0.165 0.835 35 H 0.161 0.839 36 H 0.152 0.848 37 H 0.156 0.844 38 H 0.407 0.593 39 H 0.420 0.580 40 H 0.118 0.882 41 H 0.298 0.702 42 H 0.121 0.879 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.374 -6.860 -23.601 24.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.064 3.936 3 H 0.077 0.923 4 C -0.105 4.105 5 C -0.025 4.025 6 C -0.190 4.190 7 C -0.105 4.105 8 C -0.203 4.203 9 C -0.080 4.080 10 N -0.223 5.223 11 N -0.381 5.381 12 C 0.391 3.609 13 O -0.447 6.447 14 N -0.316 5.316 15 C 0.155 3.845 16 C -0.354 4.354 17 C 0.107 3.893 18 C -0.500 4.500 19 H 0.085 0.915 20 C -0.165 4.165 21 N -0.463 5.463 22 Si 0.793 3.207 23 H -0.168 1.168 24 H -0.203 1.203 25 H -0.188 1.188 26 C -0.306 4.306 27 C -0.023 4.023 28 N -0.291 5.291 29 H 0.098 0.902 30 H 0.048 0.952 31 H 0.102 0.898 32 H 0.130 0.870 33 H 0.138 0.862 34 H 0.183 0.817 35 H 0.178 0.822 36 H 0.170 0.830 37 H 0.174 0.826 38 H 0.243 0.757 39 H 0.257 0.743 40 H 0.136 0.864 41 H 0.109 0.891 42 H 0.139 0.861 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.431 -4.819 -24.157 24.871 hybrid contribution 1.179 -1.869 1.148 2.490 sum -2.252 -6.688 -23.009 24.067 Atomic orbital electron populations 1.22148 0.94158 1.03190 1.02030 1.20747 0.94115 0.96447 0.82243 0.92256 1.20941 0.88286 1.03768 0.97554 1.21550 0.97530 0.88580 0.94850 1.22335 0.94746 1.00319 1.01634 1.22001 0.95555 0.98427 0.94545 1.22420 1.02427 0.93693 1.01778 1.23004 0.89040 1.00317 0.95597 1.67411 1.13656 1.28317 1.12905 1.45102 1.71381 1.13922 1.07670 1.16226 0.78677 0.85177 0.80858 1.90987 1.54304 1.15402 1.83976 1.42556 1.68484 1.11796 1.08734 1.17975 0.92286 0.89378 0.84906 1.21268 1.18409 1.01302 0.94392 1.17880 0.87154 0.92602 0.91631 1.19491 1.28151 0.95019 1.07307 0.91543 1.26839 0.97108 0.97663 0.94892 1.69627 1.34933 1.13079 1.28638 0.85454 0.79173 0.77575 0.78544 1.16823 1.20331 1.18793 1.21879 1.11097 0.96979 1.00612 1.22089 0.93715 0.99045 0.87471 1.67465 1.26953 1.05720 1.29003 0.90226 0.95157 0.89771 0.87028 0.86176 0.81701 0.82172 0.82980 0.82623 0.75699 0.74301 0.86413 0.89088 0.86085 0.82613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 9.48 71.98 0.68 -2.36 16 2 C 0.17 3.77 2.50 44.99 0.11 3.88 16 3 H 0.06 1.87 7.23 -2.38 -0.02 1.85 16 4 C -0.07 -0.95 5.16 29.85 0.15 -0.80 16 5 C 0.11 2.15 5.91 42.55 0.25 2.40 16 6 C -0.17 -2.41 9.71 22.36 0.22 -2.19 16 7 C -0.08 -1.13 10.18 22.47 0.23 -0.90 16 8 C -0.18 -3.13 10.11 22.36 0.23 -2.90 16 9 C 0.08 1.71 11.18 84.67 0.95 2.66 16 10 N -0.51 -13.01 9.78 -183.88 -1.80 -14.81 16 11 N -0.72 -17.82 4.80 -457.81 -2.20 -20.02 16 12 C 0.69 25.47 8.49 179.05 1.52 26.99 16 13 O -0.57 -26.90 14.26 -3.94 -0.06 -26.95 16 14 N -0.67 -24.71 5.40 -322.37 -1.74 -26.45 16 15 C 0.38 17.91 7.42 132.76 0.99 18.89 16 16 C -0.33 -15.66 6.95 23.00 0.16 -15.50 16 17 C 0.12 5.97 5.17 -21.11 -0.11 5.86 16 18 C -0.47 -25.68 9.67 23.52 0.23 -25.45 16 19 H 0.07 3.89 8.06 -2.91 -0.02 3.86 16 20 C 0.05 2.67 5.48 85.29 0.47 3.13 16 21 N -0.84 -43.74 13.92 21.84 0.30 -43.44 16 22 Si 0.97 40.67 24.43 68.60 1.68 42.35 16 23 H -0.24 -9.04 6.67 99.48 0.66 -8.37 16 24 H -0.28 -10.86 7.11 99.48 0.71 -10.16 16 25 H -0.26 -11.86 6.65 99.48 0.66 -11.20 16 26 C -0.28 -13.56 9.85 22.60 0.22 -13.33 16 27 C 0.13 5.96 11.10 84.27 0.94 6.89 16 28 N -0.57 -28.50 7.85 -194.27 -1.53 -30.02 16 29 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.03 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.12 0.82 7.87 -2.39 -0.02 0.80 16 34 H 0.17 1.14 7.95 -2.91 -0.02 1.12 16 35 H 0.16 1.30 8.06 -2.91 -0.02 1.27 16 36 H 0.15 1.84 8.06 -2.91 -0.02 1.81 16 37 H 0.16 3.06 8.06 -2.91 -0.02 3.03 16 38 H 0.41 6.94 8.62 -92.71 -0.80 6.14 16 39 H 0.42 12.00 8.71 -92.71 -0.81 11.19 16 40 H 0.12 5.24 4.43 -2.91 -0.01 5.23 16 41 H 0.30 13.85 8.29 -92.71 -0.77 13.08 16 42 H 0.12 5.38 8.06 -2.91 -0.02 5.36 16 43 H 0.16 6.17 8.06 -2.91 -0.02 6.14 16 Total: -1.00 -77.68 363.26 1.26 -76.43 By element: Atomic # 1 Polarization: 36.26 SS G_CDS: -0.63 Total: 35.63 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: 7.23 Total: 7.28 kcal Atomic # 7 Polarization: -127.78 SS G_CDS: -6.96 Total: -134.74 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -0.06 Total: -26.95 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 1.68 Total: 42.35 kcal Total: -77.68 1.26 -76.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871735439.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.642 kcal (2) G-P(sol) polarization free energy of solvation -77.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds